Wall clock time and date at job start Sat Apr 11 2020 07:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47314 * 2 1 4 4 C 1.46502 * 119.99817 * 84.99696 * 3 2 1 5 5 C 1.50704 * 109.46781 * 274.99917 * 4 3 2 6 6 H 1.07990 * 120.00404 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99665 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99755 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46953 * 239.99859 * 9 7 5 12 12 H 1.48503 * 109.46641 * 120.00117 * 9 7 5 13 13 S 1.65599 * 119.99546 * 264.99919 * 3 2 1 14 14 O 1.42101 * 106.40206 * 23.53820 * 13 3 2 15 15 O 1.42098 * 106.39969 * 156.45807 * 13 3 2 16 16 N 1.65605 * 107.21653 * 269.99773 * 13 3 2 17 17 C 1.47428 * 125.64670 * 269.69465 * 16 13 3 18 18 C 1.55126 * 104.71990 * 155.81610 * 17 16 13 19 19 C 1.55157 * 101.48609 * 37.29666 * 18 17 16 20 20 C 1.47017 * 125.64823 * 89.99980 * 16 13 3 21 21 H 1.08994 * 109.88685 * 300.59680 * 20 16 13 22 22 C 1.53002 * 109.88084 * 61.60777 * 20 16 13 23 23 H 1.09001 * 109.52019 * 297.04373 * 22 20 16 24 24 C 1.53172 * 109.52448 * 176.91320 * 22 20 16 25 25 C 1.53184 * 109.03550 * 183.17564 * 24 22 20 26 26 C 1.53095 * 109.21346 * 56.88518 * 25 24 22 27 27 O 1.42900 * 109.41492 * 302.42834 * 26 25 24 28 28 C 1.42900 * 114.10062 * 61.15483 * 27 26 25 29 29 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47263 * 300.00480 * 1 2 3 31 31 H 1.08997 * 109.47178 * 60.00202 * 1 2 3 32 32 H 1.08998 * 109.47263 * 239.99520 * 2 1 3 33 33 H 1.09007 * 109.46689 * 120.00025 * 2 1 3 34 34 H 1.09003 * 109.46517 * 155.00605 * 4 3 2 35 35 H 1.08990 * 109.47280 * 35.00446 * 4 3 2 36 36 H 0.96992 * 120.00128 * 0.02562 * 8 7 5 37 37 H 1.09008 * 110.36335 * 274.74867 * 17 16 13 38 38 H 1.09000 * 110.36348 * 37.06813 * 17 16 13 39 39 H 1.08995 * 111.19220 * 279.18851 * 18 17 16 40 40 H 1.09007 * 110.90391 * 155.27462 * 18 17 16 41 41 H 1.08996 * 110.71834 * 205.96191 * 19 18 17 42 42 H 1.08998 * 110.87193 * 82.76374 * 19 18 17 43 43 H 1.08995 * 109.54556 * 302.98270 * 24 22 20 44 44 H 1.09004 * 109.54208 * 63.24375 * 24 22 20 45 45 H 1.08997 * 109.46843 * 296.98188 * 25 24 22 46 46 H 1.08999 * 109.58234 * 176.85687 * 25 24 22 47 47 H 1.08995 * 109.47872 * 182.44408 * 26 25 24 48 48 H 1.09003 * 109.48768 * 62.41416 * 26 25 24 49 49 H 1.08998 * 109.48348 * 178.85718 * 28 27 26 50 50 H 1.09007 * 109.48669 * 58.83065 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 0.8359 2.7289 1.6355 6 1 -0.0227 2.5942 0.9946 7 6 0.7225 3.4682 2.7938 8 7 1.7684 3.6325 3.5741 9 14 -0.9167 4.2363 3.2548 10 1 -1.9274 3.9049 2.2186 11 1 -0.7644 5.7107 3.3449 12 1 -1.3612 3.7034 4.5677 13 16 2.4122 2.1201 -1.4287 14 8 1.6869 1.4413 -2.4448 15 8 2.3057 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7137 17 6 5.1421 2.6534 -1.2703 18 6 6.3544 1.6873 -1.2128 19 6 6.0863 0.7814 -2.4436 20 6 4.5477 0.6620 -2.4561 21 1 4.2416 -0.2653 -1.9720 22 6 4.0355 0.6899 -3.8976 23 1 2.9499 0.5917 -3.9003 24 6 4.6563 -0.4687 -4.6840 25 6 4.1989 -0.3837 -6.1435 26 6 4.5879 0.9824 -6.7147 27 8 4.0020 2.0144 -5.9187 28 6 4.4308 2.0145 -4.5556 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.9080 2.8919 1.1512 35 1 2.4689 1.4183 2.0480 36 1 2.6196 3.2339 3.3345 37 1 5.3248 3.4530 -1.9884 38 1 4.9407 3.0681 -0.2826 39 1 6.3512 1.1055 -0.2912 40 1 7.2917 2.2323 -1.3256 41 1 6.5480 -0.1969 -2.3101 42 1 6.4440 1.2535 -3.3586 43 1 5.7431 -0.3990 -4.6388 44 1 4.3323 -1.4164 -4.2538 45 1 3.1167 -0.5042 -6.1926 46 1 4.6797 -1.1714 -6.7235 47 1 4.2262 1.0641 -7.7396 48 1 5.6730 1.0858 -6.7027 49 1 3.9560 2.8399 -4.0251 50 1 5.5138 2.1315 -4.5151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575799556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:12 Heat of formation + Delta-G solvation = -129.980430 kcal Electronic energy + Delta-G solvation = -31661.877427 eV Core-core repulsion = 27622.431040 eV Total energy + Delta-G solvation = -4039.446387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.19302 -38.02151 -36.72376 -36.19334 -35.21125 -33.90181 -32.82976 -31.69200 -30.91228 -29.78286 -27.85294 -26.30132 -25.16773 -23.84072 -22.80215 -22.07829 -21.84685 -21.65188 -19.62360 -18.44637 -17.50044 -17.19171 -16.79485 -16.42606 -16.03959 -15.64890 -15.22304 -14.84883 -14.62891 -14.08549 -13.99061 -13.97448 -13.69225 -13.39421 -13.32400 -13.06484 -12.80340 -12.60326 -12.51748 -12.22119 -12.14099 -11.92673 -11.73228 -11.60034 -11.42122 -11.33805 -11.29794 -11.16448 -10.98166 -10.93683 -10.81591 -10.77705 -10.67056 -10.49665 -10.25620 -10.15350 -10.07307 -9.50319 -9.31903 -8.88387 -8.37550 -7.97435 -6.38898 -4.10317 1.07811 3.40353 3.45307 3.49886 3.63571 3.76944 3.99251 4.36539 4.48277 4.53819 4.59603 4.68355 4.73813 4.80132 4.87363 4.99692 5.09770 5.17886 5.24853 5.27304 5.32838 5.39161 5.43498 5.45054 5.54922 5.65755 5.67358 5.71938 5.77111 5.78576 5.80998 5.87963 5.88926 5.94671 5.99148 6.06696 6.12539 6.27358 6.33118 6.42868 6.49814 6.65911 6.86158 6.95896 7.12239 7.19450 7.47970 8.01271 8.46234 8.80265 9.58072 10.98650 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003692 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.248496 B = 7582.969569 C = 7951.133896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 N -0.988 5.988 4 C 0.249 3.751 5 C -0.603 4.603 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 1.073 2.927 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.287 1.287 13 S 2.789 3.211 14 O -0.984 6.984 15 O -0.960 6.960 16 N -1.020 6.020 17 C 0.120 3.880 18 C -0.129 4.129 19 C -0.128 4.128 20 C 0.162 3.838 21 H 0.074 0.926 22 C -0.156 4.156 23 H 0.114 0.886 24 C -0.112 4.112 25 C -0.156 4.156 26 C 0.059 3.941 27 O -0.380 6.380 28 C 0.072 3.928 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.087 0.913 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 -10.406 -15.061 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 N -0.830 5.830 4 C 0.127 3.873 5 C -0.643 4.643 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.548 5.548 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.213 1.213 13 S 2.799 3.201 14 O -0.968 6.968 15 O -0.943 6.943 16 N -0.858 5.858 17 C -0.005 4.005 18 C -0.168 4.168 19 C -0.167 4.167 20 C 0.055 3.945 21 H 0.092 0.908 22 C -0.176 4.176 23 H 0.132 0.868 24 C -0.150 4.150 25 C -0.194 4.194 26 C -0.018 4.018 27 O -0.299 6.299 28 C -0.005 4.005 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.854 -8.803 -14.502 19.619 hybrid contribution 1.149 -1.390 -0.695 1.932 sum 11.003 -10.193 -15.196 21.351 Atomic orbital electron populations 1.22250 0.96151 1.00864 1.03808 1.20941 0.95031 0.82123 1.00853 1.57720 1.78143 1.23041 1.24066 1.19092 0.97937 0.90489 0.79829 1.22382 0.96378 1.35440 1.10071 0.92375 1.25784 1.04349 0.95147 0.93080 1.70767 1.01467 1.43552 1.38997 0.83496 0.74199 0.76643 0.75572 1.21411 1.21157 1.21337 1.01811 0.71792 0.73610 0.72893 1.93511 1.69761 1.76340 1.57159 1.93628 1.84921 1.30149 1.85637 1.59542 1.24131 1.34228 1.67898 1.21997 0.85337 0.92969 1.00204 1.22815 0.97796 0.97636 0.98541 1.22788 0.94194 1.00686 0.99005 1.21188 0.93981 0.88878 0.90423 0.90791 1.22533 1.04555 0.96072 0.94451 0.86809 1.21578 1.00267 0.98346 0.94824 1.22185 1.02717 0.97929 0.96563 1.22563 0.97076 0.87159 0.94986 1.87974 1.69271 1.51788 1.20861 1.22596 0.98641 0.97419 0.81852 0.93032 0.90216 0.92766 0.92243 0.91346 0.95862 0.95912 0.92337 0.91592 0.90373 0.90467 0.90215 0.90375 0.90371 0.91657 0.91241 0.90794 0.90988 0.89132 0.93476 0.89509 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.83 37.16 0.37 -2.75 16 2 C 0.14 2.42 6.09 -4.04 -0.02 2.40 16 3 N -0.99 -20.61 2.86 -115.66 -0.33 -20.94 16 4 C 0.25 6.15 4.43 -5.19 -0.02 6.12 16 5 C -0.60 -16.91 8.41 -34.44 -0.29 -17.20 16 6 H 0.06 1.66 6.89 -52.49 -0.36 1.30 16 7 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 8 N -0.91 -27.14 13.65 55.43 0.76 -26.38 16 9 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 S 2.79 56.56 6.22 -107.50 -0.67 55.89 16 14 O -0.98 -20.35 14.29 -57.17 -0.82 -21.17 16 15 O -0.96 -23.61 16.69 -57.17 -0.95 -24.56 16 16 N -1.02 -15.53 2.65 -104.29 -0.28 -15.81 16 17 C 0.12 1.60 6.99 -2.41 -0.02 1.59 16 18 C -0.13 -1.24 7.10 -24.47 -0.17 -1.42 16 19 C -0.13 -1.14 5.13 -24.90 -0.13 -1.27 16 20 C 0.16 1.95 2.91 -66.95 -0.19 1.75 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.16 -1.95 2.03 -90.48 -0.18 -2.14 16 23 H 0.11 1.79 5.86 -51.93 -0.30 1.49 16 24 C -0.11 -1.05 5.12 -26.55 -0.14 -1.18 16 25 C -0.16 -1.41 6.13 -26.59 -0.16 -1.58 16 26 C 0.06 0.58 6.84 37.21 0.25 0.83 16 27 O -0.38 -5.27 10.77 -35.23 -0.38 -5.65 16 28 C 0.07 0.94 5.71 37.21 0.21 1.15 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.63 6.59 -51.93 -0.34 1.29 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 33 H 0.07 1.12 8.00 -51.92 -0.42 0.71 16 34 H 0.02 0.61 7.47 -51.93 -0.39 0.22 16 35 H 0.02 0.56 7.87 -51.93 -0.41 0.16 16 36 H 0.27 7.77 7.22 -40.82 -0.29 7.47 16 37 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.64 5.46 -51.93 -0.28 0.35 16 43 H 0.06 0.51 6.91 -51.93 -0.36 0.15 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 1.31 7.64 -51.93 -0.40 0.92 16 50 H 0.05 0.57 6.05 -51.93 -0.31 0.26 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -34.23 389.95 -11.03 -45.26 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.55 Total: -0.01 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.60 Total: -13.20 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.15 Total: -63.13 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -2.15 Total: -51.38 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Atomic # 16 Polarization: 56.56 SS G_CDS: -0.67 Total: 55.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.23 -11.03 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575799556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.724 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds