Wall clock time and date at job start Sat Apr 11 2020 07:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47314 * 2 1 4 4 C 1.46502 * 119.99817 * 84.99696 * 3 2 1 5 5 C 1.50704 * 109.46781 * 274.99917 * 4 3 2 6 6 H 1.07990 * 120.00404 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99665 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99755 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46953 * 239.99859 * 9 7 5 12 12 H 1.48503 * 109.46641 * 120.00117 * 9 7 5 13 13 S 1.65599 * 119.99546 * 264.99919 * 3 2 1 14 14 O 1.42101 * 106.40206 * 23.53820 * 13 3 2 15 15 O 1.42098 * 106.39969 * 156.45807 * 13 3 2 16 16 N 1.65605 * 107.21653 * 269.99773 * 13 3 2 17 17 C 1.47428 * 125.64670 * 269.69465 * 16 13 3 18 18 C 1.55126 * 104.71990 * 155.81610 * 17 16 13 19 19 C 1.55157 * 101.48609 * 37.29666 * 18 17 16 20 20 C 1.47017 * 125.64823 * 89.99980 * 16 13 3 21 21 H 1.08994 * 109.88685 * 300.59680 * 20 16 13 22 22 C 1.53002 * 109.88084 * 61.60777 * 20 16 13 23 23 H 1.09001 * 109.52019 * 297.04373 * 22 20 16 24 24 C 1.53172 * 109.52448 * 176.91320 * 22 20 16 25 25 C 1.53184 * 109.03550 * 183.17564 * 24 22 20 26 26 C 1.53095 * 109.21346 * 56.88518 * 25 24 22 27 27 O 1.42900 * 109.41492 * 302.42834 * 26 25 24 28 28 C 1.42900 * 114.10062 * 61.15483 * 27 26 25 29 29 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47263 * 300.00480 * 1 2 3 31 31 H 1.08997 * 109.47178 * 60.00202 * 1 2 3 32 32 H 1.08998 * 109.47263 * 239.99520 * 2 1 3 33 33 H 1.09007 * 109.46689 * 120.00025 * 2 1 3 34 34 H 1.09003 * 109.46517 * 155.00605 * 4 3 2 35 35 H 1.08990 * 109.47280 * 35.00446 * 4 3 2 36 36 H 0.96992 * 120.00128 * 0.02562 * 8 7 5 37 37 H 1.09008 * 110.36335 * 274.74867 * 17 16 13 38 38 H 1.09000 * 110.36348 * 37.06813 * 17 16 13 39 39 H 1.08995 * 111.19220 * 279.18851 * 18 17 16 40 40 H 1.09007 * 110.90391 * 155.27462 * 18 17 16 41 41 H 1.08996 * 110.71834 * 205.96191 * 19 18 17 42 42 H 1.08998 * 110.87193 * 82.76374 * 19 18 17 43 43 H 1.08995 * 109.54556 * 302.98270 * 24 22 20 44 44 H 1.09004 * 109.54208 * 63.24375 * 24 22 20 45 45 H 1.08997 * 109.46843 * 296.98188 * 25 24 22 46 46 H 1.08999 * 109.58234 * 176.85687 * 25 24 22 47 47 H 1.08995 * 109.47872 * 182.44408 * 26 25 24 48 48 H 1.09003 * 109.48768 * 62.41416 * 26 25 24 49 49 H 1.08998 * 109.48348 * 178.85718 * 28 27 26 50 50 H 1.09007 * 109.48669 * 58.83065 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 0.8359 2.7289 1.6355 6 1 -0.0227 2.5942 0.9946 7 6 0.7225 3.4682 2.7938 8 7 1.7684 3.6325 3.5741 9 14 -0.9167 4.2363 3.2548 10 1 -1.9274 3.9049 2.2186 11 1 -0.7644 5.7107 3.3449 12 1 -1.3612 3.7034 4.5677 13 16 2.4122 2.1201 -1.4287 14 8 1.6869 1.4413 -2.4448 15 8 2.3057 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7137 17 6 5.1421 2.6534 -1.2703 18 6 6.3544 1.6873 -1.2128 19 6 6.0863 0.7814 -2.4436 20 6 4.5477 0.6620 -2.4561 21 1 4.2416 -0.2653 -1.9720 22 6 4.0355 0.6899 -3.8976 23 1 2.9499 0.5917 -3.9003 24 6 4.6563 -0.4687 -4.6840 25 6 4.1989 -0.3837 -6.1435 26 6 4.5879 0.9824 -6.7147 27 8 4.0020 2.0144 -5.9187 28 6 4.4308 2.0145 -4.5556 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.9080 2.8919 1.1512 35 1 2.4689 1.4183 2.0480 36 1 2.6196 3.2339 3.3345 37 1 5.3248 3.4530 -1.9884 38 1 4.9407 3.0681 -0.2826 39 1 6.3512 1.1055 -0.2912 40 1 7.2917 2.2323 -1.3256 41 1 6.5480 -0.1969 -2.3101 42 1 6.4440 1.2535 -3.3586 43 1 5.7431 -0.3990 -4.6388 44 1 4.3323 -1.4164 -4.2538 45 1 3.1167 -0.5042 -6.1926 46 1 4.6797 -1.1714 -6.7235 47 1 4.2262 1.0641 -7.7396 48 1 5.6730 1.0858 -6.7027 49 1 3.9560 2.8399 -4.0251 50 1 5.5138 2.1315 -4.5151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575799556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:10 Heat of formation + Delta-G solvation = -153.879206 kcal Electronic energy + Delta-G solvation = -31662.913755 eV Core-core repulsion = 27622.431040 eV Total energy + Delta-G solvation = -4040.482715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.11556 -38.97493 -38.42481 -37.92336 -36.94768 -34.91761 -34.79475 -32.53032 -31.92470 -31.44151 -28.79044 -28.27465 -26.00830 -24.86387 -24.72540 -23.59520 -22.83472 -22.56929 -20.54795 -19.90816 -19.23745 -18.68295 -18.45983 -17.55566 -17.11256 -16.88941 -16.37790 -15.85014 -15.70667 -15.63170 -15.54165 -15.32757 -14.91735 -14.82998 -14.74266 -14.35112 -14.02832 -13.70756 -13.63694 -13.56899 -13.54313 -13.32097 -13.26494 -13.10874 -12.91963 -12.83530 -12.64809 -12.59261 -12.30449 -12.21392 -12.00089 -11.96600 -11.77556 -11.76684 -11.59206 -11.47683 -11.25664 -11.09725 -10.57081 -10.40750 -10.05098 -9.80762 -8.65491 -6.38200 -0.49701 1.48812 1.57832 1.74447 1.93902 2.45481 2.53996 2.92204 3.11527 3.16944 3.50472 3.69428 3.75921 3.80705 3.87855 4.00454 4.05195 4.10469 4.24852 4.26036 4.33417 4.38587 4.41973 4.47713 4.56018 4.58014 4.67169 4.75791 4.77795 4.81068 4.86183 4.90640 4.95309 4.95975 4.98051 5.01028 5.08528 5.14502 5.18006 5.23978 5.30822 5.39396 5.40944 5.49001 5.51612 5.79092 5.86590 6.22229 6.26386 6.54496 7.36449 8.71788 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003692 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.248496 B = 7582.969569 C = 7951.133896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.994 5.994 4 C 0.263 3.737 5 C -0.615 4.615 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.931 5.931 9 Si 1.110 2.890 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.269 1.269 13 S 2.799 3.201 14 O -0.994 6.994 15 O -1.014 7.014 16 N -1.015 6.015 17 C 0.107 3.893 18 C -0.117 4.117 19 C -0.115 4.115 20 C 0.152 3.848 21 H 0.083 0.917 22 C -0.155 4.155 23 H 0.074 0.926 24 C -0.107 4.107 25 C -0.155 4.155 26 C 0.050 3.950 27 O -0.414 6.414 28 C 0.070 3.930 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.024 0.976 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.052 0.948 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.621 -12.790 -16.174 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.835 5.835 4 C 0.139 3.861 5 C -0.654 4.654 6 H 0.063 0.937 7 C -0.226 4.226 8 N -0.569 5.569 9 Si 0.932 3.068 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.194 1.194 13 S 2.811 3.189 14 O -0.978 6.978 15 O -0.998 6.998 16 N -0.856 5.856 17 C -0.018 4.018 18 C -0.156 4.156 19 C -0.154 4.154 20 C 0.046 3.954 21 H 0.101 0.899 22 C -0.176 4.176 23 H 0.092 0.908 24 C -0.145 4.145 25 C -0.193 4.193 26 C -0.026 4.026 27 O -0.333 6.333 28 C -0.006 4.006 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.023 0.977 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.044 -11.220 -15.629 22.699 hybrid contribution 0.503 -0.685 -0.478 0.975 sum 12.547 -11.905 -16.107 23.635 Atomic orbital electron populations 1.22223 0.96654 1.02637 1.01391 1.21241 0.94737 0.80743 1.03009 1.57660 1.79121 1.24091 1.22609 1.18689 0.95847 0.90185 0.81399 1.22689 0.97340 1.35513 1.09838 0.93675 1.27085 1.06731 0.95470 0.93339 1.70865 1.01679 1.44661 1.39684 0.83022 0.71116 0.76208 0.76410 1.20498 1.20669 1.19371 1.01145 0.72892 0.72361 0.72548 1.93498 1.71144 1.76068 1.57068 1.93547 1.86362 1.33620 1.86298 1.59090 1.22671 1.35829 1.68008 1.22262 0.86375 0.94179 0.98950 1.22807 0.96710 0.96896 0.99182 1.22824 0.91150 1.02353 0.99066 1.21592 0.96467 0.87677 0.89640 0.89855 1.22460 1.02456 0.97309 0.95343 0.90805 1.21607 1.01658 0.97035 0.94216 1.22194 1.01688 0.98390 0.96994 1.22850 0.98335 0.86533 0.94874 1.87924 1.70441 1.53609 1.21342 1.22571 0.99794 0.96635 0.81648 0.89197 0.93081 0.94588 0.89408 0.89685 0.97732 0.95854 0.93149 0.91096 0.92920 0.90343 0.87461 0.87097 0.88982 0.88828 0.90245 0.92983 0.87980 0.88167 0.91175 0.92986 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.17 9.83 71.98 0.71 -5.46 16 2 C 0.13 4.45 6.09 86.38 0.53 4.98 16 3 N -0.99 -42.55 2.86 -519.83 -1.48 -44.04 16 4 C 0.26 13.46 4.43 85.63 0.38 13.84 16 5 C -0.61 -35.62 8.41 25.60 0.22 -35.40 16 6 H 0.04 2.68 6.89 -2.92 -0.02 2.66 16 7 C -0.03 -1.60 5.46 84.65 0.46 -1.13 16 8 N -0.93 -56.64 13.65 21.45 0.29 -56.34 16 9 Si 1.11 52.46 29.90 68.60 2.05 54.51 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 S 2.80 118.37 6.22 -56.49 -0.35 118.01 16 14 O -0.99 -42.72 14.29 -128.00 -1.83 -44.55 16 15 O -1.01 -53.15 16.69 -128.00 -2.14 -55.29 16 16 N -1.01 -31.02 2.65 -483.87 -1.28 -32.30 16 17 C 0.11 2.85 6.99 86.93 0.61 3.46 16 18 C -0.12 -1.91 7.10 32.06 0.23 -1.68 16 19 C -0.12 -1.56 5.13 31.78 0.16 -1.39 16 20 C 0.15 3.33 2.91 45.34 0.13 3.46 16 21 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 22 C -0.16 -3.68 2.03 -10.70 -0.02 -3.70 16 23 H 0.07 2.36 5.86 -2.39 -0.01 2.35 16 24 C -0.11 -1.63 5.12 30.71 0.16 -1.48 16 25 C -0.16 -2.39 6.13 30.69 0.19 -2.20 16 26 C 0.05 0.87 6.84 72.01 0.49 1.36 16 27 O -0.41 -11.29 10.77 -148.98 -1.60 -12.89 16 28 C 0.07 1.79 5.71 72.01 0.41 2.20 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.05 2.13 6.59 -2.39 -0.02 2.11 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.55 7.61 -2.39 -0.02 2.54 16 33 H 0.08 2.68 8.00 -2.38 -0.02 2.66 16 34 H 0.00 0.26 7.47 -2.39 -0.02 0.25 16 35 H 0.02 1.19 7.87 -2.39 -0.02 1.17 16 36 H 0.26 15.60 7.22 -92.71 -0.67 14.93 16 37 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.03 5.46 -2.39 -0.01 1.01 16 43 H 0.09 0.93 6.91 -2.39 -0.02 0.91 16 44 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.05 1.65 7.64 -2.39 -0.02 1.63 16 50 H 0.08 1.54 6.05 -2.38 -0.01 1.52 16 Total: -1.00 -79.36 389.95 -0.68 -80.05 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.01 Total: 16.00 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.65 Total: -23.15 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -2.47 Total: -132.68 kcal Atomic # 8 Polarization: -107.16 SS G_CDS: -5.57 Total: -112.73 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 2.05 Total: 54.51 kcal Atomic # 16 Polarization: 118.37 SS G_CDS: -0.35 Total: 118.01 kcal Total: -79.36 -0.68 -80.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575799556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.834 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds