Wall clock time and date at job start Sat Apr 11 2020 07:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47173 * 2 1 4 4 C 1.35954 * 116.99680 * 180.02562 * 3 2 1 5 5 C 1.38748 * 119.98340 * 0.22850 * 4 3 2 6 6 C 1.38055 * 120.02336 * 180.23358 * 5 4 3 7 7 C 1.38916 * 119.97887 * 359.52048 * 6 5 4 8 8 N 1.39864 * 120.02208 * 180.27813 * 7 6 5 9 9 C 1.34772 * 120.00042 * 324.30590 * 8 7 6 10 10 O 1.21389 * 119.99832 * 3.64640 * 9 8 7 11 11 C 1.49340 * 120.00398 * 183.64706 * 9 8 7 12 12 O 1.21362 * 119.99744 * 353.41553 * 11 9 8 13 13 N 1.34773 * 119.99970 * 173.42113 * 11 9 8 14 14 C 1.46931 * 120.63317 * 351.04061 * 13 11 9 15 15 C 1.52763 * 109.00992 * 233.58555 * 14 13 11 16 16 C 1.53041 * 109.38043 * 305.58737 * 15 14 13 17 17 C 1.50700 * 109.44605 * 181.25139 * 16 15 14 18 18 H 1.07998 * 120.00229 * 239.94056 * 17 16 15 19 19 C 1.37880 * 119.99664 * 59.93946 * 17 16 15 20 20 N 1.31506 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99826 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47134 * 120.00030 * 21 19 17 24 24 H 1.48493 * 109.47418 * 240.00271 * 21 19 17 25 25 C 1.53042 * 109.53650 * 61.24373 * 16 15 14 26 26 C 1.46928 * 120.63223 * 171.32417 * 13 11 9 27 27 C 1.38923 * 119.95912 * 0.24964 * 7 6 5 28 28 C 1.38055 * 119.97633 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46596 * 300.00292 * 1 2 3 31 31 H 1.09006 * 109.46930 * 59.99548 * 1 2 3 32 32 H 1.09007 * 109.46760 * 240.00198 * 2 1 3 33 33 H 1.08999 * 109.47289 * 120.00320 * 2 1 3 34 34 H 1.08006 * 119.98854 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.01116 * 179.79708 * 6 5 4 36 36 H 0.97004 * 120.00395 * 144.31077 * 8 7 6 37 37 H 1.09000 * 109.58477 * 353.41980 * 14 13 11 38 38 H 1.09004 * 109.58197 * 113.84266 * 14 13 11 39 39 H 1.08996 * 109.56562 * 185.55337 * 15 14 13 40 40 H 1.08996 * 109.38132 * 65.51275 * 15 14 13 41 41 H 1.08991 * 109.46092 * 301.21844 * 16 15 14 42 42 H 0.97003 * 120.00209 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.49636 * 178.68084 * 25 16 15 44 44 H 1.08997 * 109.52766 * 58.59928 * 25 16 15 45 45 H 1.09003 * 109.58337 * 246.16192 * 26 13 11 46 46 H 1.09005 * 109.58305 * 6.43501 * 26 13 11 47 47 H 1.07994 * 120.00900 * 180.02562 * 27 7 6 48 48 H 1.08004 * 119.98644 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3542 1.5253 -0.0005 5 6 4.1990 0.4247 -0.0059 6 6 5.5678 0.6045 -0.0015 7 6 6.0993 1.8880 -0.0019 8 7 7.4859 2.0712 -0.0034 9 6 8.2788 1.2196 0.6765 10 8 7.7964 0.2561 1.2354 11 6 9.7511 1.4614 0.7426 12 8 10.2494 2.3535 0.0878 13 7 10.5262 0.6889 1.5292 14 6 9.9227 -0.2619 2.4729 15 6 10.4870 -0.0037 3.8688 16 6 12.0156 -0.0546 3.8160 17 6 12.5731 0.1695 5.1980 18 1 13.2297 1.0060 5.3864 19 6 12.2448 -0.6935 6.2220 20 7 11.4449 -1.7118 5.9928 21 14 12.9364 -0.4162 7.9350 22 1 13.8033 0.7896 7.9296 23 1 11.8197 -0.2180 8.8935 24 1 13.7355 -1.5991 8.3437 25 6 12.5318 1.0364 2.8750 26 6 11.9908 0.7859 1.4639 27 6 5.2527 2.9894 -0.0014 28 6 3.8842 2.8076 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7856 -0.5731 -0.0100 35 1 6.2252 -0.2524 -0.0024 36 1 7.8768 2.8112 -0.4938 37 1 8.8412 -0.1264 2.4866 38 1 10.1615 -1.2808 2.1679 39 1 10.1212 -0.7656 4.5571 40 1 10.1673 0.9803 4.2118 41 1 12.3340 -1.0305 3.4498 42 1 11.2142 -2.3191 6.7131 43 1 13.6215 1.0148 2.8560 44 1 12.1934 2.0110 3.2267 45 1 12.4017 -0.1458 1.0749 46 1 12.2735 1.6110 0.8101 47 1 5.6650 3.9876 -0.0022 48 1 3.2258 3.6638 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578666445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:16 Heat of formation + Delta-G solvation = -67.326298 kcal Electronic energy + Delta-G solvation = -29941.461441 eV Core-core repulsion = 25769.287990 eV Total energy + Delta-G solvation = -4172.173451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.18083 -40.21166 -38.94871 -37.53172 -37.04993 -34.75451 -33.45736 -32.09795 -31.29598 -31.15299 -30.13375 -28.97434 -26.65129 -24.87467 -24.35742 -23.09373 -22.51192 -22.10566 -21.47755 -20.23330 -19.06403 -18.54430 -17.77764 -17.26738 -16.61081 -16.40970 -16.16906 -16.07654 -15.69262 -14.98548 -14.75430 -14.54995 -14.19992 -14.00325 -13.86703 -13.65524 -13.56417 -13.19439 -13.02529 -12.92046 -12.78993 -12.64718 -12.41061 -12.35102 -12.05943 -11.76812 -11.44517 -11.29095 -11.06759 -10.97840 -10.93174 -10.61673 -10.39877 -10.11102 -10.09504 -9.74990 -9.31022 -9.20527 -9.20231 -8.67242 -8.38549 -8.13960 -7.95048 -6.02657 -4.09055 0.95040 1.12972 1.63093 2.38512 2.91510 3.24847 3.27550 3.36001 3.39670 3.57790 3.65925 4.39090 4.41008 4.53389 4.55919 4.62844 4.75093 4.87269 4.97962 5.10500 5.24386 5.27149 5.29841 5.40695 5.56113 5.62025 5.66553 5.79017 5.80821 5.87694 6.03935 6.07329 6.13908 6.15550 6.19748 6.40393 6.46723 6.58107 6.70256 6.74443 6.93673 7.03651 7.12027 7.15765 7.25837 7.62515 7.70186 7.78562 7.91795 8.03320 8.15432 8.39875 8.94472 9.56057 11.02873 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002270 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.559204 B =12331.013065 C =13740.144793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.116 3.884 5 C -0.189 4.189 6 C -0.076 4.076 7 C 0.105 3.895 8 N -0.646 5.646 9 C 0.509 3.491 10 O -0.488 6.488 11 C 0.503 3.497 12 O -0.541 6.541 13 N -0.559 5.559 14 C 0.067 3.933 15 C -0.124 4.124 16 C 0.046 3.954 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.122 4.122 26 C 0.107 3.893 27 C -0.099 4.099 28 C -0.134 4.134 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.421 0.579 37 H 0.121 0.879 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.036 0.964 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.135 0.865 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.696 4.551 -14.945 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.232 6.232 4 C 0.071 3.929 5 C -0.209 4.209 6 C -0.096 4.096 7 C 0.012 3.988 8 N -0.293 5.293 9 C 0.293 3.707 10 O -0.363 6.363 11 C 0.284 3.716 12 O -0.421 6.421 13 N -0.291 5.291 14 C -0.054 4.054 15 C -0.162 4.162 16 C 0.027 3.973 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.161 4.161 26 C -0.015 4.015 27 C -0.119 4.119 28 C -0.153 4.153 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.259 0.741 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.153 0.847 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.930 4.282 -14.751 23.609 hybrid contribution 0.702 0.121 0.897 1.146 sum -17.227 4.403 -13.854 22.541 Atomic orbital electron populations 1.21776 0.92745 1.02894 1.03478 1.22798 0.95850 0.81977 1.01604 1.86059 1.18970 1.29326 1.88800 1.18996 0.82316 0.94101 0.97515 1.21154 0.93619 0.98275 1.07818 1.21105 0.94727 0.96680 0.97107 1.17647 0.82190 0.94039 1.04941 1.43143 1.04428 1.31646 1.50100 1.20570 0.88466 0.83053 0.78627 1.90574 1.75521 1.27876 1.42299 1.19647 0.86723 0.83191 0.82014 1.90713 1.74657 1.31058 1.45655 1.48226 1.07262 1.37531 1.36048 1.23007 1.01241 0.91088 0.90041 1.21962 0.99194 1.01899 0.93163 1.18686 0.91625 0.93309 0.93673 1.21224 1.28513 1.11434 0.93867 0.92634 1.24969 0.95106 0.95089 0.98871 1.69845 1.35486 1.15171 1.32400 0.86560 0.78894 0.78085 0.84603 1.19845 1.21058 1.21052 1.22012 0.99812 1.01237 0.92996 1.21919 0.77682 1.01929 0.99921 1.20753 0.92176 0.97996 1.00987 1.20174 0.94294 0.94979 1.05887 0.90345 0.91487 0.91581 0.91989 0.91828 0.85076 0.83917 0.74078 0.86222 0.91830 0.87523 0.94507 0.95375 0.92996 0.91798 0.92782 0.91366 0.90005 0.84686 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.18 10.14 -19.59 -0.20 -3.38 16 4 C 0.12 1.24 6.69 -39.20 -0.26 0.98 16 5 C -0.19 -2.03 9.03 -39.46 -0.36 -2.39 16 6 C -0.08 -0.93 8.68 -39.40 -0.34 -1.28 16 7 C 0.11 1.25 6.28 -83.69 -0.53 0.73 16 8 N -0.65 -7.94 5.33 -10.27 -0.05 -7.99 16 9 C 0.51 7.78 7.57 -11.64 -0.09 7.70 16 10 O -0.49 -8.19 10.68 5.46 0.06 -8.13 16 11 C 0.50 8.59 7.73 -11.64 -0.09 8.50 16 12 O -0.54 -9.68 15.92 5.49 0.09 -9.59 16 13 N -0.56 -10.20 2.98 -173.57 -0.52 -10.72 16 14 C 0.07 1.29 5.95 -3.93 -0.02 1.27 16 15 C -0.12 -2.84 5.14 -26.83 -0.14 -2.98 16 16 C 0.05 1.09 2.07 -91.73 -0.19 0.90 16 17 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -24.74 11.30 55.43 0.63 -24.12 16 21 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 26 C 0.11 1.90 6.45 -3.71 -0.02 1.87 16 27 C -0.10 -0.98 9.96 -39.39 -0.39 -1.37 16 28 C -0.13 -1.32 9.98 -39.46 -0.39 -1.72 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 33 H 0.06 0.43 7.67 -51.93 -0.40 0.04 16 34 H 0.13 1.15 6.29 -52.48 -0.33 0.82 16 35 H 0.14 1.88 6.30 -52.49 -0.33 1.55 16 36 H 0.42 4.38 8.30 -40.82 -0.34 4.04 16 37 H 0.12 2.30 4.33 -54.72 -0.24 2.06 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.11 2.73 6.03 -51.93 -0.31 2.42 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 47 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -30.20 386.64 -8.86 -39.06 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.90 Total: 5.76 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.77 Total: -2.70 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.05 Total: -42.83 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.20 -8.86 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578666445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.263 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds