Wall clock time and date at job start Sat Apr 11 2020 07:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47173 * 2 1 4 4 C 1.35954 * 116.99680 * 180.02562 * 3 2 1 5 5 C 1.38748 * 119.98340 * 0.22850 * 4 3 2 6 6 C 1.38055 * 120.02336 * 180.23358 * 5 4 3 7 7 C 1.38916 * 119.97887 * 359.52048 * 6 5 4 8 8 N 1.39864 * 120.02208 * 180.27813 * 7 6 5 9 9 C 1.34772 * 120.00042 * 324.30590 * 8 7 6 10 10 O 1.21389 * 119.99832 * 3.64640 * 9 8 7 11 11 C 1.49340 * 120.00398 * 183.64706 * 9 8 7 12 12 O 1.21362 * 119.99744 * 353.41553 * 11 9 8 13 13 N 1.34773 * 119.99970 * 173.42113 * 11 9 8 14 14 C 1.46931 * 120.63317 * 351.04061 * 13 11 9 15 15 C 1.52763 * 109.00992 * 233.58555 * 14 13 11 16 16 C 1.53041 * 109.38043 * 305.58737 * 15 14 13 17 17 C 1.50700 * 109.44605 * 181.25139 * 16 15 14 18 18 H 1.07998 * 120.00229 * 239.94056 * 17 16 15 19 19 C 1.37880 * 119.99664 * 59.93946 * 17 16 15 20 20 N 1.31506 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99826 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47134 * 120.00030 * 21 19 17 24 24 H 1.48493 * 109.47418 * 240.00271 * 21 19 17 25 25 C 1.53042 * 109.53650 * 61.24373 * 16 15 14 26 26 C 1.46928 * 120.63223 * 171.32417 * 13 11 9 27 27 C 1.38923 * 119.95912 * 0.24964 * 7 6 5 28 28 C 1.38055 * 119.97633 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46596 * 300.00292 * 1 2 3 31 31 H 1.09006 * 109.46930 * 59.99548 * 1 2 3 32 32 H 1.09007 * 109.46760 * 240.00198 * 2 1 3 33 33 H 1.08999 * 109.47289 * 120.00320 * 2 1 3 34 34 H 1.08006 * 119.98854 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.01116 * 179.79708 * 6 5 4 36 36 H 0.97004 * 120.00395 * 144.31077 * 8 7 6 37 37 H 1.09000 * 109.58477 * 353.41980 * 14 13 11 38 38 H 1.09004 * 109.58197 * 113.84266 * 14 13 11 39 39 H 1.08996 * 109.56562 * 185.55337 * 15 14 13 40 40 H 1.08996 * 109.38132 * 65.51275 * 15 14 13 41 41 H 1.08991 * 109.46092 * 301.21844 * 16 15 14 42 42 H 0.97003 * 120.00209 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.49636 * 178.68084 * 25 16 15 44 44 H 1.08997 * 109.52766 * 58.59928 * 25 16 15 45 45 H 1.09003 * 109.58337 * 246.16192 * 26 13 11 46 46 H 1.09005 * 109.58305 * 6.43501 * 26 13 11 47 47 H 1.07994 * 120.00900 * 180.02562 * 27 7 6 48 48 H 1.08004 * 119.98644 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3542 1.5253 -0.0005 5 6 4.1990 0.4247 -0.0059 6 6 5.5678 0.6045 -0.0015 7 6 6.0993 1.8880 -0.0019 8 7 7.4859 2.0712 -0.0034 9 6 8.2788 1.2196 0.6765 10 8 7.7964 0.2561 1.2354 11 6 9.7511 1.4614 0.7426 12 8 10.2494 2.3535 0.0878 13 7 10.5262 0.6889 1.5292 14 6 9.9227 -0.2619 2.4729 15 6 10.4870 -0.0037 3.8688 16 6 12.0156 -0.0546 3.8160 17 6 12.5731 0.1695 5.1980 18 1 13.2297 1.0060 5.3864 19 6 12.2448 -0.6935 6.2220 20 7 11.4449 -1.7118 5.9928 21 14 12.9364 -0.4162 7.9350 22 1 13.8033 0.7896 7.9296 23 1 11.8197 -0.2180 8.8935 24 1 13.7355 -1.5991 8.3437 25 6 12.5318 1.0364 2.8750 26 6 11.9908 0.7859 1.4639 27 6 5.2527 2.9894 -0.0014 28 6 3.8842 2.8076 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7856 -0.5731 -0.0100 35 1 6.2252 -0.2524 -0.0024 36 1 7.8768 2.8112 -0.4938 37 1 8.8412 -0.1264 2.4866 38 1 10.1615 -1.2808 2.1679 39 1 10.1212 -0.7656 4.5571 40 1 10.1673 0.9803 4.2118 41 1 12.3340 -1.0305 3.4498 42 1 11.2142 -2.3191 6.7131 43 1 13.6215 1.0148 2.8560 44 1 12.1934 2.0110 3.2267 45 1 12.4017 -0.1458 1.0749 46 1 12.2735 1.6110 0.8101 47 1 5.6650 3.9876 -0.0022 48 1 3.2258 3.6638 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578666445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:15 Heat of formation + Delta-G solvation = -84.757203 kcal Electronic energy + Delta-G solvation = -29942.217302 eV Core-core repulsion = 25769.287990 eV Total energy + Delta-G solvation = -4172.929312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.35481 -41.14372 -40.12624 -38.64961 -38.44522 -35.89685 -35.16252 -33.06033 -32.70321 -31.94885 -31.79948 -29.88943 -28.34415 -26.30049 -25.05975 -24.42153 -24.10549 -23.18208 -22.41900 -21.57900 -20.56582 -19.31141 -18.99373 -18.47595 -18.40137 -17.60668 -17.30504 -17.01984 -16.82629 -16.50152 -16.18708 -15.66753 -15.40176 -15.23193 -14.95125 -14.71713 -14.64991 -14.44242 -14.37732 -14.28686 -14.00852 -13.75870 -13.43832 -13.26059 -13.19157 -13.09245 -12.84914 -12.66489 -12.51323 -12.36543 -12.16747 -12.03008 -11.92798 -11.72439 -11.52107 -11.05445 -11.03488 -11.01142 -10.47018 -10.16889 -10.00544 -9.72612 -8.82871 -8.08526 -6.22106 -0.07702 0.30883 0.53193 1.18348 1.39608 1.42510 1.52737 1.98842 2.24363 2.39930 2.43385 2.72922 3.14291 3.18230 3.79898 3.87134 4.06894 4.08488 4.13550 4.21132 4.25365 4.28687 4.38043 4.39370 4.44429 4.47913 4.55229 4.62751 4.77270 4.86125 4.92572 4.95940 5.00535 5.03573 5.13329 5.17518 5.20513 5.23518 5.33650 5.34937 5.37011 5.46274 5.62310 5.72881 5.94116 5.97527 6.09104 6.22425 6.37539 6.41135 6.60674 6.81159 6.88638 7.45817 8.95294 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002270 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.559204 B =12331.013065 C =13740.144793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.112 3.888 5 C -0.195 4.195 6 C -0.091 4.091 7 C 0.083 3.917 8 N -0.627 5.627 9 C 0.511 3.489 10 O -0.508 6.508 11 C 0.506 3.494 12 O -0.546 6.546 13 N -0.568 5.568 14 C 0.084 3.916 15 C -0.114 4.114 16 C 0.042 3.958 17 C -0.532 4.532 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 0.951 3.049 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.280 1.280 25 C -0.113 4.113 26 C 0.112 3.888 27 C -0.089 4.089 28 C -0.137 4.137 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.431 0.569 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.005 0.995 42 H 0.261 0.739 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.162 0.838 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 5.720 -15.783 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.242 6.242 4 C 0.066 3.934 5 C -0.214 4.214 6 C -0.111 4.111 7 C -0.010 4.010 8 N -0.274 5.274 9 C 0.294 3.706 10 O -0.384 6.384 11 C 0.289 3.711 12 O -0.425 6.425 13 N -0.300 5.300 14 C -0.037 4.037 15 C -0.153 4.153 16 C 0.024 3.976 17 C -0.570 4.570 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.553 5.553 21 Si 0.777 3.223 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.206 1.206 25 C -0.151 4.151 26 C -0.009 4.009 27 C -0.109 4.109 28 C -0.156 4.156 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.146 0.854 36 H 0.271 0.729 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.023 0.977 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.179 0.821 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.969 5.485 -15.624 25.180 hybrid contribution 0.918 -0.219 1.108 1.455 sum -18.051 5.267 -14.516 23.755 Atomic orbital electron populations 1.21800 0.91352 1.04105 1.03308 1.23060 0.97002 0.80909 1.02162 1.86061 1.18485 1.31035 1.88578 1.19212 0.82742 0.94450 0.96952 1.21284 0.93100 0.99266 1.07719 1.21096 0.95274 0.96593 0.98114 1.17828 0.81836 0.94669 1.06670 1.42975 1.04603 1.30937 1.48903 1.20220 0.87795 0.83457 0.79175 1.90557 1.75420 1.28840 1.43611 1.19899 0.87481 0.82450 0.81283 1.90705 1.75099 1.31045 1.45660 1.48185 1.07582 1.37783 1.36425 1.22720 1.01409 0.91343 0.88260 1.21731 0.98673 1.00004 0.94850 1.18658 0.92213 0.93378 0.93387 1.21584 1.28636 1.11317 0.95504 0.93080 1.25696 0.95483 0.94989 1.02349 1.69972 1.36263 1.15763 1.33336 0.85616 0.78241 0.78080 0.80371 1.19366 1.20846 1.20616 1.21854 1.00382 0.99179 0.93726 1.21885 0.77516 1.03195 0.98343 1.21008 0.91959 0.98540 0.99371 1.20496 0.94601 0.95449 1.05078 0.88464 0.91873 0.91502 0.91041 0.91664 0.83733 0.85351 0.72912 0.85589 0.91955 0.90462 0.95769 0.97707 0.92990 0.90878 0.93639 0.90086 0.88530 0.82092 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.04 0.56 5.46 71.98 0.39 0.95 16 3 O -0.33 -6.07 10.14 -93.03 -0.94 -7.01 16 4 C 0.11 2.23 6.69 22.51 0.15 2.38 16 5 C -0.19 -4.01 9.03 22.35 0.20 -3.81 16 6 C -0.09 -2.18 8.68 22.39 0.19 -1.99 16 7 C 0.08 1.86 6.28 38.19 0.24 2.10 16 8 N -0.63 -14.56 5.33 -304.75 -1.62 -16.19 16 9 C 0.51 15.20 7.57 87.24 0.66 15.86 16 10 O -0.51 -16.98 10.68 -3.37 -0.04 -17.02 16 11 C 0.51 16.74 7.73 87.24 0.67 17.41 16 12 O -0.55 -18.55 15.92 -3.28 -0.05 -18.60 16 13 N -0.57 -20.37 2.98 -821.42 -2.45 -22.81 16 14 C 0.08 3.28 5.95 86.22 0.51 3.80 16 15 C -0.11 -5.37 5.14 30.53 0.16 -5.21 16 16 C 0.04 2.06 2.07 -11.51 -0.02 2.03 16 17 C -0.53 -28.95 8.56 25.60 0.22 -28.73 16 18 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.91 -51.87 11.30 21.45 0.24 -51.63 16 21 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C -0.11 -4.55 5.30 30.67 0.16 -4.38 16 26 C 0.11 3.84 6.45 86.36 0.56 4.40 16 27 C -0.09 -1.56 9.96 22.39 0.22 -1.34 16 28 C -0.14 -2.41 9.98 22.35 0.22 -2.18 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 0.78 7.65 -2.38 -0.02 0.76 16 33 H 0.07 0.81 7.67 -2.39 -0.02 0.80 16 34 H 0.15 2.43 6.29 -2.91 -0.02 2.41 16 35 H 0.13 3.43 6.30 -2.91 -0.02 3.41 16 36 H 0.43 8.14 8.30 -92.71 -0.77 7.37 16 37 H 0.13 4.88 4.33 -46.55 -0.20 4.68 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.08 4.11 6.03 -2.39 -0.01 4.10 16 40 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.10 3.07 7.01 -2.38 -0.02 3.05 16 47 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 48 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -64.82 386.64 2.93 -61.89 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.03 Total: 24.02 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.73 Total: 1.89 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.83 Total: -90.63 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -1.03 Total: -42.63 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -64.82 2.93 -61.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578666445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.872 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds