Wall clock time and date at job start Sat Apr 11 2020 07:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47398 * 2 1 4 4 C 1.46505 * 119.99957 * 275.00623 * 3 2 1 5 5 C 1.52997 * 109.46647 * 274.99539 * 4 3 2 6 6 S 1.65598 * 119.99969 * 94.99870 * 3 2 1 7 7 O 1.42099 * 104.27743 * 333.92790 * 6 3 2 8 8 O 1.42104 * 104.27534 * 206.07806 * 6 3 2 9 9 C 1.81399 * 104.45081 * 90.00406 * 6 3 2 10 10 C 1.50698 * 109.47102 * 179.97438 * 9 6 3 11 11 O 1.21279 * 119.99808 * 0.02562 * 10 9 6 12 12 N 1.34778 * 120.00023 * 180.02562 * 10 9 6 13 13 C 1.46919 * 120.63255 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.34238 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53004 * 109.41904 * 178.67276 * 15 14 13 17 17 C 1.50701 * 109.47085 * 295.13082 * 16 15 14 18 18 H 1.07998 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00682 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99519 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47337 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47119 * 120.00221 * 21 19 17 24 24 H 1.48507 * 109.47266 * 240.00028 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 26 26 C 1.46933 * 120.62741 * 0.02562 * 12 10 9 27 27 H 1.09003 * 109.47595 * 60.00141 * 1 2 3 28 28 H 1.08998 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47466 * 299.99741 * 1 2 3 30 30 H 1.09000 * 109.47466 * 240.00259 * 2 1 3 31 31 H 1.09003 * 109.47595 * 119.99859 * 2 1 3 32 32 H 1.09000 * 109.47055 * 34.99201 * 4 3 2 33 33 H 1.08997 * 109.47084 * 154.99755 * 4 3 2 34 34 H 1.09000 * 109.47117 * 299.99624 * 5 4 3 35 35 H 1.09005 * 109.47565 * 59.99793 * 5 4 3 36 36 H 1.08999 * 109.47172 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46570 * 59.99831 * 9 6 3 38 38 H 1.09001 * 109.47092 * 300.00079 * 9 6 3 39 39 H 1.09002 * 109.58751 * 246.20189 * 13 12 10 40 40 H 1.08996 * 109.58750 * 6.48373 * 13 12 10 41 41 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 42 42 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 43 43 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 44 44 H 1.09001 * 109.46592 * 55.13132 * 16 15 14 45 45 H 1.08997 * 109.47133 * 175.12697 * 16 15 14 46 46 H 0.97001 * 120.00836 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.50232 * 301.42239 * 25 15 14 48 48 H 1.09007 * 109.52628 * 181.33900 * 25 15 14 49 49 H 1.08994 * 109.58580 * 353.38021 * 26 12 10 50 50 H 1.09006 * 109.57831 * 113.65514 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.5150 1.7840 -1.8918 6 16 2.4122 2.1202 1.4287 7 8 1.6207 1.4496 2.3999 8 8 2.2332 3.5055 1.1676 9 6 4.1697 1.7389 1.6661 10 6 4.6507 2.3655 2.9494 11 8 3.8833 3.0059 3.6364 12 7 5.9337 2.2144 3.3336 13 6 6.4176 2.8197 4.5818 14 6 7.0751 1.7327 5.4380 15 6 8.1613 1.0315 4.6136 16 6 8.8447 -0.0335 5.4737 17 6 9.5719 0.6321 6.6136 18 1 9.5493 1.7071 6.7142 19 6 10.2661 -0.1315 7.5279 20 7 10.2941 -1.4405 7.4052 21 14 11.1681 0.6935 8.9404 22 1 10.9829 2.1644 8.8542 23 1 10.6226 0.2013 10.2309 24 1 12.6154 0.3707 8.8595 25 6 7.5283 0.3681 3.3884 26 6 6.8752 1.4420 2.5116 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3616 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 4.3116 2.0830 -1.2104 35 1 3.5812 0.7124 -2.0801 36 1 3.6193 2.3256 -2.8319 37 1 4.7440 2.1375 0.8298 38 1 4.3034 0.6583 1.7165 39 1 7.1479 3.5957 4.3524 40 1 5.5795 3.2559 5.1253 41 1 7.5213 2.1867 6.3227 42 1 6.3230 1.0047 5.7421 43 1 8.8997 1.7645 4.2887 44 1 8.0938 -0.7163 5.8711 45 1 9.5565 -0.5907 4.8646 46 1 10.7827 -1.9778 8.0482 47 1 6.7721 -0.3472 3.7118 48 1 8.2980 -0.1500 2.8161 49 1 6.3387 0.9670 1.6903 50 1 7.6413 2.1064 2.1117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584471409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:22 Heat of formation + Delta-G solvation = -121.388155 kcal Electronic energy + Delta-G solvation = -29655.230759 eV Core-core repulsion = 25616.156962 eV Total energy + Delta-G solvation = -4039.073798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.28010 -37.69176 -37.51295 -37.36090 -36.04544 -34.22547 -32.41862 -32.29551 -31.50806 -30.05559 -29.20407 -27.95166 -24.75418 -24.14091 -23.01827 -22.58010 -22.02162 -20.21238 -19.09529 -18.80602 -18.21378 -17.07881 -17.04601 -16.70816 -16.27906 -15.90018 -15.52113 -14.97926 -14.58059 -14.51324 -14.25599 -14.10213 -13.84695 -13.68690 -13.61752 -13.30498 -13.20405 -12.99866 -12.69815 -12.53087 -12.34480 -12.23719 -12.21476 -12.15614 -12.05436 -11.98376 -11.40607 -11.32159 -11.26847 -11.13669 -11.07424 -10.82758 -10.76947 -10.49961 -10.38369 -10.11524 -9.73022 -9.53960 -9.37659 -9.03760 -8.58311 -8.40215 -6.04909 -4.06933 -0.11248 2.28763 2.34788 2.83428 3.27739 3.36027 3.39135 3.62079 3.85391 3.95379 4.28280 4.41730 4.47562 4.64082 4.70707 4.73466 4.89697 4.92136 4.94191 5.01046 5.13209 5.19255 5.27029 5.31364 5.31943 5.44999 5.45348 5.51127 5.51837 5.69321 5.69924 5.79284 5.84106 5.93531 5.94490 6.17926 6.19117 6.22508 6.40363 6.48734 6.86508 6.91678 7.02264 7.23539 7.59682 7.73345 7.83686 7.94054 8.36436 8.99553 9.57496 11.06387 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002281 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.684081 B =12273.442222 C =12448.131465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 N -1.002 6.002 4 C 0.106 3.894 5 C -0.179 4.179 6 S 2.640 3.360 7 O -0.934 6.934 8 O -0.940 6.940 9 C -0.675 4.675 10 C 0.541 3.459 11 O -0.545 6.545 12 N -0.590 5.590 13 C 0.105 3.895 14 C -0.119 4.119 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.132 4.132 26 C 0.102 3.898 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.736 3.259 -22.095 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 N -0.840 5.840 4 C -0.019 4.019 5 C -0.238 4.238 6 S 2.728 3.272 7 O -0.924 6.924 8 O -0.930 6.930 9 C -0.802 4.802 10 C 0.326 3.674 11 O -0.425 6.425 12 N -0.321 5.321 13 C -0.017 4.017 14 C -0.157 4.157 15 C -0.101 4.101 16 C -0.009 4.009 17 C -0.555 4.555 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.170 4.170 26 C -0.021 4.021 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.597 3.924 -21.110 26.538 hybrid contribution 1.479 -0.247 0.459 1.568 sum -14.118 3.677 -20.651 25.284 Atomic orbital electron populations 1.22202 0.95564 1.02571 1.02928 1.21270 0.95177 0.81031 1.03192 1.57865 1.79317 1.24245 1.22597 1.21418 0.98019 0.97590 0.84901 1.22314 0.97208 1.02705 1.01523 1.04437 0.75867 0.74187 0.72690 1.93592 1.63961 1.75746 1.59118 1.93563 1.84282 1.31198 1.83913 1.31241 1.30489 1.12828 1.05680 1.19088 0.82962 0.80415 0.84893 1.90827 1.53997 1.42301 1.55347 1.48051 1.08699 1.51443 1.23944 1.21945 0.99516 0.96307 0.83910 1.21981 0.98004 0.97118 0.98617 1.21269 0.95869 0.98967 0.93952 1.19125 0.94993 0.92978 0.93828 1.21261 1.30994 0.93227 1.10020 0.92505 1.25019 0.96629 0.94806 0.98014 1.69960 1.42613 1.04312 1.36605 0.86580 0.79525 0.79705 0.82450 1.19730 1.21045 1.21083 1.22063 1.00144 0.97058 0.97717 1.21978 0.92335 0.94287 0.93492 0.92349 0.91353 0.91483 0.90222 0.89956 0.89714 0.88624 0.92751 0.91800 0.90949 0.82542 0.82307 0.91231 0.89160 0.89344 0.92124 0.92172 0.96590 0.96585 0.93061 0.91804 0.90731 0.90368 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.15 0.38 -0.80 16 2 C 0.12 0.75 5.98 -4.04 -0.02 0.72 16 3 N -1.00 -7.80 2.71 -114.38 -0.31 -8.12 16 4 C 0.11 0.62 6.38 -4.04 -0.03 0.60 16 5 C -0.18 -0.76 10.24 37.16 0.38 -0.38 16 6 S 2.64 31.76 4.51 -107.50 -0.48 31.27 16 7 O -0.93 -14.34 16.75 -57.55 -0.96 -15.30 16 8 O -0.94 -14.07 16.53 -57.55 -0.95 -15.02 16 9 C -0.68 -6.62 5.01 36.00 0.18 -6.44 16 10 C 0.54 7.99 7.72 -10.99 -0.08 7.91 16 11 O -0.55 -10.13 15.28 5.56 0.08 -10.05 16 12 N -0.59 -8.34 2.97 -172.74 -0.51 -8.85 16 13 C 0.10 1.61 6.42 -3.71 -0.02 1.58 16 14 C -0.12 -2.11 5.21 -26.45 -0.14 -2.25 16 15 C -0.08 -1.50 2.10 -90.42 -0.19 -1.69 16 16 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 17 C -0.52 -13.81 8.39 -34.44 -0.29 -14.10 16 18 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.26 13.28 55.43 0.74 -25.52 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.13 -1.91 5.37 -26.59 -0.14 -2.05 16 26 C 0.10 1.17 6.34 -3.68 -0.02 1.15 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 30 H 0.08 0.30 8.11 -51.93 -0.42 -0.12 16 31 H 0.08 0.51 7.61 -51.93 -0.40 0.12 16 32 H 0.08 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.10 0.67 6.82 -51.93 -0.35 0.31 16 34 H 0.05 0.23 6.96 -51.93 -0.36 -0.13 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.16 1.00 6.76 -51.92 -0.35 0.64 16 38 H 0.16 1.10 7.69 -51.92 -0.40 0.70 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 41 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 49 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -36.21 405.08 -10.26 -46.48 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.72 Total: -3.44 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.22 Total: -13.75 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.09 Total: -42.48 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.83 Total: -40.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 31.76 SS G_CDS: -0.48 Total: 31.27 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.21 -10.26 -46.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584471409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.909 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds