Wall clock time and date at job start Sat Apr 11 2020 07:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47398 * 2 1 4 4 C 1.46505 * 119.99957 * 275.00623 * 3 2 1 5 5 C 1.52997 * 109.46647 * 274.99539 * 4 3 2 6 6 S 1.65598 * 119.99969 * 94.99870 * 3 2 1 7 7 O 1.42099 * 104.27743 * 333.92790 * 6 3 2 8 8 O 1.42104 * 104.27534 * 206.07806 * 6 3 2 9 9 C 1.81399 * 104.45081 * 90.00406 * 6 3 2 10 10 C 1.50698 * 109.47102 * 179.97438 * 9 6 3 11 11 O 1.21279 * 119.99808 * 0.02562 * 10 9 6 12 12 N 1.34778 * 120.00023 * 180.02562 * 10 9 6 13 13 C 1.46919 * 120.63255 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.34238 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53004 * 109.41904 * 178.67276 * 15 14 13 17 17 C 1.50701 * 109.47085 * 295.13082 * 16 15 14 18 18 H 1.07998 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00682 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99519 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47337 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47119 * 120.00221 * 21 19 17 24 24 H 1.48507 * 109.47266 * 240.00028 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 26 26 C 1.46933 * 120.62741 * 0.02562 * 12 10 9 27 27 H 1.09003 * 109.47595 * 60.00141 * 1 2 3 28 28 H 1.08998 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47466 * 299.99741 * 1 2 3 30 30 H 1.09000 * 109.47466 * 240.00259 * 2 1 3 31 31 H 1.09003 * 109.47595 * 119.99859 * 2 1 3 32 32 H 1.09000 * 109.47055 * 34.99201 * 4 3 2 33 33 H 1.08997 * 109.47084 * 154.99755 * 4 3 2 34 34 H 1.09000 * 109.47117 * 299.99624 * 5 4 3 35 35 H 1.09005 * 109.47565 * 59.99793 * 5 4 3 36 36 H 1.08999 * 109.47172 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46570 * 59.99831 * 9 6 3 38 38 H 1.09001 * 109.47092 * 300.00079 * 9 6 3 39 39 H 1.09002 * 109.58751 * 246.20189 * 13 12 10 40 40 H 1.08996 * 109.58750 * 6.48373 * 13 12 10 41 41 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 42 42 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 43 43 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 44 44 H 1.09001 * 109.46592 * 55.13132 * 16 15 14 45 45 H 1.08997 * 109.47133 * 175.12697 * 16 15 14 46 46 H 0.97001 * 120.00836 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.50232 * 301.42239 * 25 15 14 48 48 H 1.09007 * 109.52628 * 181.33900 * 25 15 14 49 49 H 1.08994 * 109.58580 * 353.38021 * 26 12 10 50 50 H 1.09006 * 109.57831 * 113.65514 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.5150 1.7840 -1.8918 6 16 2.4122 2.1202 1.4287 7 8 1.6207 1.4496 2.3999 8 8 2.2332 3.5055 1.1676 9 6 4.1697 1.7389 1.6661 10 6 4.6507 2.3655 2.9494 11 8 3.8833 3.0059 3.6364 12 7 5.9337 2.2144 3.3336 13 6 6.4176 2.8197 4.5818 14 6 7.0751 1.7327 5.4380 15 6 8.1613 1.0315 4.6136 16 6 8.8447 -0.0335 5.4737 17 6 9.5719 0.6321 6.6136 18 1 9.5493 1.7071 6.7142 19 6 10.2661 -0.1315 7.5279 20 7 10.2941 -1.4405 7.4052 21 14 11.1681 0.6935 8.9404 22 1 10.9829 2.1644 8.8542 23 1 10.6226 0.2013 10.2309 24 1 12.6154 0.3707 8.8595 25 6 7.5283 0.3681 3.3884 26 6 6.8752 1.4420 2.5116 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3616 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 4.3116 2.0830 -1.2104 35 1 3.5812 0.7124 -2.0801 36 1 3.6193 2.3256 -2.8319 37 1 4.7440 2.1375 0.8298 38 1 4.3034 0.6583 1.7165 39 1 7.1479 3.5957 4.3524 40 1 5.5795 3.2559 5.1253 41 1 7.5213 2.1867 6.3227 42 1 6.3230 1.0047 5.7421 43 1 8.8997 1.7645 4.2887 44 1 8.0938 -0.7163 5.8711 45 1 9.5565 -0.5907 4.8646 46 1 10.7827 -1.9778 8.0482 47 1 6.7721 -0.3472 3.7118 48 1 8.2980 -0.1500 2.8161 49 1 6.3387 0.9670 1.6903 50 1 7.6413 2.1064 2.1117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584471409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:20 Heat of formation + Delta-G solvation = -146.934458 kcal Electronic energy + Delta-G solvation = -29656.338530 eV Core-core repulsion = 25616.156962 eV Total energy + Delta-G solvation = -4040.181568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.43784 -38.92983 -38.35638 -38.11700 -37.03957 -35.82925 -34.13414 -32.84724 -32.61229 -31.16740 -29.70143 -29.58868 -26.38753 -24.59166 -24.22473 -23.68069 -23.07057 -21.54830 -20.22397 -19.73393 -19.05282 -18.45139 -18.03968 -17.88727 -17.54760 -16.77201 -16.58790 -16.51748 -15.87598 -15.31982 -15.10865 -14.96730 -14.81752 -14.75691 -14.60844 -14.42263 -14.28982 -13.95388 -13.86663 -13.65908 -13.45518 -13.25172 -13.19671 -13.04824 -12.96142 -12.77047 -12.65318 -12.58321 -12.53600 -12.34896 -12.26710 -12.06457 -11.83123 -11.81924 -11.59431 -11.44543 -11.33016 -11.07088 -10.82353 -10.53512 -10.08804 -9.79958 -8.18315 -6.26724 -0.97927 1.21081 1.38284 1.40318 1.51585 1.55514 1.84735 2.41027 2.75888 3.04503 3.06999 3.15827 3.74034 3.79582 3.86454 3.99889 4.05984 4.10285 4.15152 4.25191 4.31331 4.38192 4.49378 4.51255 4.53468 4.60303 4.64846 4.72597 4.76907 4.84831 4.90307 4.92497 5.06947 5.08550 5.11945 5.24377 5.31435 5.35069 5.36459 5.38064 5.47654 5.48436 5.56423 5.69589 5.79990 5.89795 6.14896 6.29305 6.74036 6.90505 7.41958 8.93518 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002281 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.684081 B =12273.442222 C =12448.131465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 N -0.990 5.990 4 C 0.099 3.901 5 C -0.179 4.179 6 S 2.636 3.364 7 O -0.981 6.981 8 O -0.981 6.981 9 C -0.661 4.661 10 C 0.530 3.470 11 O -0.594 6.594 12 N -0.591 5.591 13 C 0.111 3.889 14 C -0.112 4.112 15 C -0.075 4.075 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.062 0.938 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.955 3.045 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.279 1.279 25 C -0.128 4.128 26 C 0.102 3.898 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.201 0.799 38 H 0.197 0.803 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.066 0.934 44 H -0.016 1.016 45 H -0.005 1.005 46 H 0.261 0.739 47 H 0.054 0.946 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 3.273 -25.094 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.014 4.014 3 N -0.831 5.831 4 C -0.026 4.026 5 C -0.237 4.237 6 S 2.728 3.272 7 O -0.971 6.971 8 O -0.971 6.971 9 C -0.790 4.790 10 C 0.317 3.683 11 O -0.476 6.476 12 N -0.321 5.321 13 C -0.012 4.012 14 C -0.151 4.151 15 C -0.094 4.094 16 C -0.005 4.005 17 C -0.565 4.565 18 H 0.080 0.920 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.781 3.219 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.205 1.205 25 C -0.166 4.166 26 C -0.019 4.019 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.218 0.782 38 H 0.214 0.786 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.002 0.998 45 H 0.013 0.987 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.142 0.858 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.686 3.949 -24.134 28.526 hybrid contribution 1.189 -0.309 1.366 1.837 sum -13.497 3.640 -22.768 26.717 Atomic orbital electron populations 1.22251 0.96392 1.03273 1.01794 1.21543 0.94632 0.80209 1.04973 1.57547 1.79074 1.24810 1.21638 1.21640 1.00180 0.96618 0.84128 1.22336 0.95741 1.03819 1.01845 1.04086 0.76754 0.73346 0.73041 1.93534 1.66053 1.76186 1.61335 1.93507 1.85348 1.33701 1.84537 1.31157 1.28480 1.14979 1.04399 1.19830 0.82554 0.79890 0.86032 1.90815 1.55174 1.44420 1.57236 1.48153 1.09105 1.51343 1.23538 1.21743 0.99256 0.95679 0.84489 1.21832 0.97377 0.97320 0.98538 1.21123 0.95955 0.97485 0.94827 1.19022 0.93822 0.93785 0.93838 1.21715 1.30531 0.93640 1.10658 0.91995 1.25899 0.97767 0.95383 1.00843 1.70085 1.43867 1.05795 1.37830 0.85539 0.78247 0.79156 0.78965 1.18564 1.21023 1.20510 1.21989 1.00296 0.97794 0.96537 1.22227 0.92776 0.93603 0.93282 0.91398 0.89793 0.94694 0.86488 0.89971 0.87877 0.90276 0.92364 0.90391 0.89943 0.78173 0.78604 0.89298 0.90448 0.91237 0.94067 0.91539 0.99779 0.98670 0.93020 0.92733 0.89325 0.85798 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.11 1.10 5.98 86.38 0.52 1.62 16 3 N -0.99 -13.23 2.71 -515.78 -1.40 -14.63 16 4 C 0.10 0.90 6.38 86.38 0.55 1.45 16 5 C -0.18 -0.76 10.24 71.98 0.74 -0.02 16 6 S 2.64 61.37 4.51 -56.49 -0.25 61.11 16 7 O -0.98 -30.93 16.75 -127.64 -2.14 -33.07 16 8 O -0.98 -29.73 16.53 -127.64 -2.11 -31.84 16 9 C -0.66 -10.66 5.01 71.24 0.36 -10.31 16 10 C 0.53 14.67 7.72 87.66 0.68 15.34 16 11 O -0.59 -22.29 15.28 -3.03 -0.05 -22.33 16 12 N -0.59 -15.22 2.97 -818.81 -2.43 -17.65 16 13 C 0.11 3.30 6.42 86.36 0.55 3.86 16 14 C -0.11 -4.02 5.21 30.78 0.16 -3.86 16 15 C -0.08 -2.72 2.10 -10.66 -0.02 -2.74 16 16 C 0.03 1.59 4.45 29.85 0.13 1.73 16 17 C -0.53 -28.58 8.39 25.60 0.21 -28.37 16 18 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 19 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 20 N -0.93 -56.01 13.28 21.45 0.28 -55.73 16 21 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 C -0.13 -3.40 5.37 30.69 0.16 -3.24 16 26 C 0.10 1.89 6.34 86.38 0.55 2.44 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.03 0.65 7.90 -2.39 -0.02 0.63 16 30 H 0.12 0.34 8.11 -2.39 -0.02 0.32 16 31 H 0.08 0.84 7.61 -2.39 -0.02 0.82 16 32 H 0.10 0.57 8.11 -2.39 -0.02 0.55 16 33 H 0.08 1.01 6.82 -2.39 -0.02 0.99 16 34 H 0.06 0.21 6.96 -2.39 -0.02 0.19 16 35 H 0.08 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.20 1.42 6.76 -2.39 -0.02 1.41 16 38 H 0.20 1.71 7.69 -2.39 -0.02 1.69 16 39 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.08 2.53 7.00 -2.39 -0.02 2.51 16 41 H 0.07 2.70 6.93 -2.39 -0.02 2.68 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 49 H 0.12 1.22 5.93 -2.39 -0.01 1.20 16 50 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -84.89 405.08 0.62 -84.26 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.91 Total: 7.24 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 5.79 Total: -23.19 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.55 Total: -88.01 kcal Atomic # 8 Polarization: -82.95 SS G_CDS: -4.29 Total: -87.24 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 61.37 SS G_CDS: -0.25 Total: 61.11 kcal Total: -84.89 0.62 -84.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584471409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.672 kcal (2) G-P(sol) polarization free energy of solvation -84.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds