Wall clock time and date at job start Sat Apr 11 2020 07:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47494 * 2 1 4 4 C 1.35966 * 117.00524 * 180.02562 * 3 2 1 5 5 C 1.38718 * 119.98567 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.01303 * 180.02562 * 5 4 3 7 7 C 1.38845 * 119.98470 * 359.97438 * 6 5 4 8 8 N 1.40116 * 120.01169 * 180.02562 * 7 6 5 9 9 C 1.46497 * 120.00230 * 7.44940 * 8 7 6 10 10 C 1.50701 * 109.47130 * 274.11207 * 9 8 7 11 11 H 1.08008 * 119.99886 * 4.81053 * 10 9 8 12 12 C 1.37876 * 119.99883 * 184.81127 * 10 9 8 13 13 N 1.31513 * 120.00242 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46612 * 90.00177 * 14 12 10 16 16 H 1.48495 * 109.46992 * 210.00010 * 14 12 10 17 17 H 1.48504 * 109.46940 * 330.00559 * 14 12 10 18 18 C 1.34778 * 119.99470 * 187.44688 * 8 7 6 19 19 O 1.21290 * 120.00721 * 5.79075 * 18 8 7 20 20 C 1.50701 * 119.99673 * 185.79075 * 18 8 7 21 21 H 1.09000 * 110.54012 * 37.85473 * 20 18 8 22 22 C 1.54788 * 110.42799 * 160.59256 * 20 18 8 23 23 C 1.54485 * 101.69036 * 143.70571 * 22 20 18 24 24 N 1.46766 * 105.47524 * 334.39217 * 23 22 20 25 25 C 1.46502 * 124.34883 * 196.99497 * 24 23 22 26 26 C 1.34415 * 111.30176 * 17.01531 * 24 23 22 27 27 O 1.21284 * 124.94259 * 179.55602 * 26 24 23 28 28 C 1.38844 * 119.97198 * 0.27632 * 7 6 5 29 29 C 1.38093 * 119.98492 * 359.44977 * 28 7 6 30 30 H 1.09001 * 109.47371 * 59.99935 * 1 2 3 31 31 H 1.09006 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46936 * 299.99729 * 1 2 3 33 33 H 1.09002 * 109.46936 * 240.00271 * 2 1 3 34 34 H 1.08996 * 109.47099 * 120.00467 * 2 1 3 35 35 H 1.07996 * 119.99410 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.00716 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.47190 * 34.11231 * 9 8 7 38 38 H 1.09001 * 109.47319 * 154.11247 * 9 8 7 39 39 H 0.96995 * 119.99839 * 179.97438 * 13 12 10 40 40 H 1.08995 * 111.17091 * 25.53945 * 22 20 18 41 41 H 1.09000 * 110.86833 * 261.74076 * 22 20 18 42 42 H 1.09000 * 110.24287 * 215.38702 * 23 22 20 43 43 H 1.09001 * 110.31819 * 93.43028 * 23 22 20 44 44 H 1.08996 * 109.47257 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.46962 * 300.00211 * 25 24 23 46 46 H 1.08998 * 109.47070 * 59.99661 * 25 24 23 47 47 H 1.07996 * 120.01091 * 179.69635 * 28 7 6 48 48 H 1.07995 * 119.99447 * 180.27359 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 3.8842 2.8074 0.0000 6 6 5.2531 2.9890 -0.0011 7 6 6.0991 1.8881 -0.0022 8 7 7.4882 2.0718 -0.0027 9 6 8.0496 3.4148 0.1623 10 6 8.1233 4.0968 -1.1796 11 1 7.7148 3.6128 -2.0545 12 6 8.7122 5.3385 -1.2903 13 7 9.2101 5.9276 -0.2251 14 14 8.8042 6.1836 -2.9537 15 1 7.5908 7.0160 -3.1537 16 1 10.0109 7.0475 -3.0040 17 1 8.8837 5.1590 -4.0257 18 6 8.3078 1.0127 -0.1550 19 8 7.8454 -0.0824 -0.3963 20 6 9.7988 1.1891 -0.0255 21 1 10.0324 1.9009 0.7663 22 6 10.4823 -0.1727 0.2468 23 6 11.7993 -0.0263 -0.5474 24 7 11.5110 0.9464 -1.6079 25 6 12.3348 1.1328 -2.8049 26 6 10.3942 1.6447 -1.3396 27 8 9.9337 2.5167 -2.0457 28 6 5.5681 0.6052 -0.0079 29 6 4.1990 0.4250 -0.0011 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2260 3.6636 0.0004 36 1 5.6655 3.9871 -0.0011 37 1 7.4132 3.9951 0.8304 38 1 9.0505 3.3405 0.5875 39 1 9.6247 6.8009 -0.3031 40 1 9.8837 -0.9977 -0.1392 41 1 10.6807 -0.3017 1.3108 42 1 12.0863 -0.9840 -0.9817 43 1 12.5927 0.3462 0.1006 44 1 11.8995 1.9143 -3.4276 45 1 13.3436 1.4222 -2.5103 46 1 12.3742 0.2001 -3.3676 47 1 6.2256 -0.2515 -0.0137 48 1 3.7859 -0.5728 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589835848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:27 Heat of formation + Delta-G solvation = -47.400336 kcal Electronic energy + Delta-G solvation = -31471.181027 eV Core-core repulsion = 27299.871631 eV Total energy + Delta-G solvation = -4171.309396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.80244 -39.75778 -38.83270 -36.91211 -35.85884 -34.92274 -32.67398 -32.40965 -31.64521 -30.40229 -28.89169 -27.61299 -26.80821 -26.44440 -23.89300 -23.25823 -22.63169 -21.72507 -20.86034 -19.77746 -18.51496 -17.88469 -17.24612 -16.68854 -16.44951 -16.06363 -15.93395 -15.82274 -15.15384 -14.67888 -14.37338 -14.20464 -14.08562 -13.54080 -13.38799 -13.22979 -13.21128 -13.02930 -12.86126 -12.53016 -12.48257 -12.28736 -12.18177 -12.14031 -11.92992 -11.76421 -11.60052 -11.54257 -11.25918 -10.97117 -10.86588 -10.67857 -10.56809 -10.50366 -10.04371 -9.77188 -9.12676 -8.91518 -8.75076 -8.44895 -8.37517 -8.34467 -6.90815 -6.01441 -3.98927 1.82692 1.92182 2.89369 3.19499 3.37090 3.39006 3.43053 3.46126 3.53734 3.73108 4.39584 4.51876 4.57910 4.72317 4.89998 4.92698 4.98780 5.18493 5.19757 5.22691 5.33843 5.36395 5.45125 5.46798 5.50265 5.52357 5.60826 5.71188 5.72403 5.80520 5.88531 5.94317 5.94672 6.04997 6.13753 6.21533 6.37685 6.53355 6.81087 6.83784 6.90418 6.95137 7.11012 7.18906 7.42513 7.58622 7.87063 7.94546 8.10056 8.13938 8.65934 8.75494 9.02002 9.63303 11.06955 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.003899 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.890953 B = 7179.200426 C = 9185.782710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.088 3.912 5 C -0.133 4.133 6 C -0.100 4.100 7 C 0.135 3.865 8 N -0.523 5.523 9 C 0.229 3.771 10 C -0.488 4.488 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.905 5.905 14 Si 0.896 3.104 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.272 1.272 18 C 0.537 3.463 19 O -0.544 6.544 20 C -0.141 4.141 21 H 0.132 0.868 22 C -0.121 4.121 23 C 0.108 3.892 24 N -0.635 5.635 25 C 0.101 3.899 26 C 0.517 3.483 27 O -0.449 6.449 28 C -0.135 4.135 29 C -0.193 4.193 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.175 0.825 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -13.219 2.969 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.043 3.957 5 C -0.152 4.152 6 C -0.120 4.120 7 C 0.040 3.960 8 N -0.241 5.241 9 C 0.110 3.890 10 C -0.526 4.526 11 H 0.081 0.919 12 C -0.133 4.133 13 N -0.545 5.545 14 Si 0.725 3.275 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.197 1.197 18 C 0.326 3.674 19 O -0.425 6.425 20 C -0.165 4.165 21 H 0.150 0.850 22 C -0.159 4.159 23 C -0.015 4.015 24 N -0.374 5.374 25 C -0.041 4.041 26 C 0.301 3.699 27 O -0.317 6.317 28 C -0.154 4.154 29 C -0.212 4.212 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.191 0.809 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.103 -12.901 2.422 13.294 hybrid contribution 0.453 0.512 -0.861 1.099 sum -1.650 -12.389 1.562 12.596 Atomic orbital electron populations 1.21760 0.93286 1.02417 1.03308 1.22649 0.95314 0.82861 1.01123 1.86013 1.19746 1.28322 1.89651 1.18944 0.81636 0.94366 1.00767 1.20161 0.94482 0.94426 1.06160 1.21005 0.91530 0.99480 1.00000 1.17946 0.83138 0.93766 1.01120 1.45959 1.03318 1.10624 1.64184 1.19783 0.94755 0.75550 0.98880 1.21129 1.37029 1.01385 0.93068 0.91888 1.24716 0.94960 0.97137 0.96485 1.69908 1.40030 1.16150 1.28452 0.86494 0.77059 0.79022 0.84932 1.21027 1.21566 1.19667 1.19792 0.87862 0.83516 0.76186 1.90295 1.75752 1.26631 1.49869 1.22059 0.93536 1.00490 1.00438 0.85030 1.22653 0.95282 0.96615 1.01315 1.21975 0.97507 0.92700 0.89328 1.48087 1.27229 1.39736 1.22366 1.21429 0.94309 1.01887 0.86505 1.20199 0.80744 0.81861 0.87122 1.91060 1.61882 1.27145 1.51563 1.22288 0.95058 0.98348 0.99752 1.21080 0.94034 0.97260 1.08844 0.91684 0.90764 0.91705 0.92420 0.92436 0.85507 0.83359 0.94180 0.93711 0.92972 0.88263 0.89228 0.90744 0.91470 0.89946 0.92633 0.92745 0.80876 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.65 5.46 37.16 0.20 0.85 16 3 O -0.32 -5.01 10.14 -19.63 -0.20 -5.21 16 4 C 0.09 1.52 6.69 -39.22 -0.26 1.26 16 5 C -0.13 -2.41 9.98 -39.46 -0.39 -2.80 16 6 C -0.10 -2.02 9.05 -39.41 -0.36 -2.37 16 7 C 0.14 2.86 6.48 -83.62 -0.54 2.32 16 8 N -0.52 -11.44 2.69 -114.69 -0.31 -11.75 16 9 C 0.23 5.47 4.21 -5.19 -0.02 5.45 16 10 C -0.49 -13.09 5.81 -34.44 -0.20 -13.29 16 11 H 0.06 1.83 7.62 -52.48 -0.40 1.43 16 12 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 13 N -0.90 -25.48 13.29 55.43 0.74 -24.74 16 14 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 17 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 18 C 0.54 10.96 6.70 -10.98 -0.07 10.89 16 19 O -0.54 -11.27 12.07 5.55 0.07 -11.20 16 20 C -0.14 -2.47 2.43 -91.69 -0.22 -2.69 16 21 H 0.13 2.26 6.45 -51.93 -0.34 1.92 16 22 C -0.12 -1.53 6.60 -25.01 -0.17 -1.69 16 23 C 0.11 1.22 7.35 -3.12 -0.02 1.20 16 24 N -0.64 -9.74 3.33 -180.28 -0.60 -10.34 16 25 C 0.10 1.30 11.14 59.85 0.67 1.96 16 26 C 0.52 10.21 7.38 -10.86 -0.08 10.13 16 27 O -0.45 -11.00 13.51 5.55 0.08 -10.92 16 28 C -0.13 -2.62 8.98 -39.41 -0.35 -2.97 16 29 C -0.19 -3.30 9.03 -39.45 -0.36 -3.65 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 34 H 0.06 0.61 7.66 -51.93 -0.40 0.22 16 35 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.15 3.16 6.17 -52.49 -0.32 2.83 16 37 H 0.04 0.99 6.79 -51.93 -0.35 0.63 16 38 H 0.05 1.09 5.76 -51.93 -0.30 0.79 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.10 1.35 6.90 -51.93 -0.36 0.99 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.24 7.53 -51.93 -0.39 0.85 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.17 3.44 4.70 -55.32 -0.26 3.18 16 48 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -32.86 383.96 -8.15 -41.01 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.79 Total: 4.55 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.90 Total: 5.40 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.17 Total: -46.83 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.86 -8.15 -41.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589835848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.391 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds