Wall clock time and date at job start Sat Apr 11 2020 07:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47494 * 2 1 4 4 C 1.35966 * 117.00524 * 180.02562 * 3 2 1 5 5 C 1.38718 * 119.98567 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.01303 * 180.02562 * 5 4 3 7 7 C 1.38845 * 119.98470 * 359.97438 * 6 5 4 8 8 N 1.40116 * 120.01169 * 180.02562 * 7 6 5 9 9 C 1.46497 * 120.00230 * 7.44940 * 8 7 6 10 10 C 1.50701 * 109.47130 * 274.11207 * 9 8 7 11 11 H 1.08008 * 119.99886 * 4.81053 * 10 9 8 12 12 C 1.37876 * 119.99883 * 184.81127 * 10 9 8 13 13 N 1.31513 * 120.00242 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46612 * 90.00177 * 14 12 10 16 16 H 1.48495 * 109.46992 * 210.00010 * 14 12 10 17 17 H 1.48504 * 109.46940 * 330.00559 * 14 12 10 18 18 C 1.34778 * 119.99470 * 187.44688 * 8 7 6 19 19 O 1.21290 * 120.00721 * 5.79075 * 18 8 7 20 20 C 1.50701 * 119.99673 * 185.79075 * 18 8 7 21 21 H 1.09000 * 110.54012 * 37.85473 * 20 18 8 22 22 C 1.54788 * 110.42799 * 160.59256 * 20 18 8 23 23 C 1.54485 * 101.69036 * 143.70571 * 22 20 18 24 24 N 1.46766 * 105.47524 * 334.39217 * 23 22 20 25 25 C 1.46502 * 124.34883 * 196.99497 * 24 23 22 26 26 C 1.34415 * 111.30176 * 17.01531 * 24 23 22 27 27 O 1.21284 * 124.94259 * 179.55602 * 26 24 23 28 28 C 1.38844 * 119.97198 * 0.27632 * 7 6 5 29 29 C 1.38093 * 119.98492 * 359.44977 * 28 7 6 30 30 H 1.09001 * 109.47371 * 59.99935 * 1 2 3 31 31 H 1.09006 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46936 * 299.99729 * 1 2 3 33 33 H 1.09002 * 109.46936 * 240.00271 * 2 1 3 34 34 H 1.08996 * 109.47099 * 120.00467 * 2 1 3 35 35 H 1.07996 * 119.99410 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.00716 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.47190 * 34.11231 * 9 8 7 38 38 H 1.09001 * 109.47319 * 154.11247 * 9 8 7 39 39 H 0.96995 * 119.99839 * 179.97438 * 13 12 10 40 40 H 1.08995 * 111.17091 * 25.53945 * 22 20 18 41 41 H 1.09000 * 110.86833 * 261.74076 * 22 20 18 42 42 H 1.09000 * 110.24287 * 215.38702 * 23 22 20 43 43 H 1.09001 * 110.31819 * 93.43028 * 23 22 20 44 44 H 1.08996 * 109.47257 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.46962 * 300.00211 * 25 24 23 46 46 H 1.08998 * 109.47070 * 59.99661 * 25 24 23 47 47 H 1.07996 * 120.01091 * 179.69635 * 28 7 6 48 48 H 1.07995 * 119.99447 * 180.27359 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 3.8842 2.8074 0.0000 6 6 5.2531 2.9890 -0.0011 7 6 6.0991 1.8881 -0.0022 8 7 7.4882 2.0718 -0.0027 9 6 8.0496 3.4148 0.1623 10 6 8.1233 4.0968 -1.1796 11 1 7.7148 3.6128 -2.0545 12 6 8.7122 5.3385 -1.2903 13 7 9.2101 5.9276 -0.2251 14 14 8.8042 6.1836 -2.9537 15 1 7.5908 7.0160 -3.1537 16 1 10.0109 7.0475 -3.0040 17 1 8.8837 5.1590 -4.0257 18 6 8.3078 1.0127 -0.1550 19 8 7.8454 -0.0824 -0.3963 20 6 9.7988 1.1891 -0.0255 21 1 10.0324 1.9009 0.7663 22 6 10.4823 -0.1727 0.2468 23 6 11.7993 -0.0263 -0.5474 24 7 11.5110 0.9464 -1.6079 25 6 12.3348 1.1328 -2.8049 26 6 10.3942 1.6447 -1.3396 27 8 9.9337 2.5167 -2.0457 28 6 5.5681 0.6052 -0.0079 29 6 4.1990 0.4250 -0.0011 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2260 3.6636 0.0004 36 1 5.6655 3.9871 -0.0011 37 1 7.4132 3.9951 0.8304 38 1 9.0505 3.3405 0.5875 39 1 9.6247 6.8009 -0.3031 40 1 9.8837 -0.9977 -0.1392 41 1 10.6807 -0.3017 1.3108 42 1 12.0863 -0.9840 -0.9817 43 1 12.5927 0.3462 0.1006 44 1 11.8995 1.9143 -3.4276 45 1 13.3436 1.4222 -2.5103 46 1 12.3742 0.2001 -3.3676 47 1 6.2256 -0.2515 -0.0137 48 1 3.7859 -0.5728 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589835848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:26 Heat of formation + Delta-G solvation = -67.730413 kcal Electronic energy + Delta-G solvation = -31472.062606 eV Core-core repulsion = 27299.871631 eV Total energy + Delta-G solvation = -4172.190975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28338 -41.10219 -40.21203 -38.36770 -37.28332 -36.57828 -34.47915 -33.82583 -32.65454 -31.82477 -30.29536 -29.30535 -28.26484 -27.59945 -25.38765 -24.65218 -24.13390 -23.00461 -22.12934 -21.18304 -19.98393 -19.18780 -18.85532 -18.50126 -18.01099 -17.43028 -17.20692 -16.97082 -16.55242 -16.39910 -15.93542 -15.68581 -15.58543 -14.89408 -14.68261 -14.61657 -14.49143 -14.37253 -14.22754 -14.02326 -13.72141 -13.64649 -13.42796 -13.33768 -13.23225 -13.08559 -13.01783 -12.84983 -12.68113 -12.63980 -12.50426 -12.13241 -11.99689 -11.87397 -11.77854 -11.55563 -10.68516 -10.59879 -10.46670 -10.30745 -9.93095 -9.56625 -8.48618 -8.10799 -6.13718 0.33115 0.43207 1.32979 1.35356 1.38387 1.50298 1.71883 2.06685 2.25483 2.34849 2.48026 2.91095 3.20017 3.30282 3.44598 3.68773 3.95165 3.98725 4.07833 4.09679 4.12765 4.22800 4.32968 4.41059 4.41731 4.45157 4.54329 4.57921 4.66890 4.70110 4.73150 4.87215 4.91309 4.97736 4.99108 5.03056 5.11198 5.19104 5.22393 5.25263 5.39523 5.45975 5.62976 5.71356 5.78376 6.03869 6.06530 6.14207 6.42461 6.54205 6.83560 7.07421 7.33664 7.49009 8.93767 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.003899 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.890953 B = 7179.200426 C = 9185.782710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.096 3.904 5 C -0.136 4.136 6 C -0.114 4.114 7 C 0.104 3.896 8 N -0.532 5.532 9 C 0.249 3.751 10 C -0.475 4.475 11 H 0.033 0.967 12 C 0.030 3.970 13 N -0.926 5.926 14 Si 0.940 3.060 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.289 1.289 18 C 0.529 3.471 19 O -0.550 6.550 20 C -0.144 4.144 21 H 0.130 0.870 22 C -0.109 4.109 23 C 0.107 3.893 24 N -0.631 5.631 25 C 0.095 3.905 26 C 0.502 3.498 27 O -0.515 6.515 28 C -0.140 4.140 29 C -0.184 4.184 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.171 0.829 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -15.735 3.490 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.051 3.949 5 C -0.155 4.155 6 C -0.135 4.135 7 C 0.010 3.990 8 N -0.251 5.251 9 C 0.129 3.871 10 C -0.513 4.513 11 H 0.051 0.949 12 C -0.168 4.168 13 N -0.568 5.568 14 Si 0.768 3.232 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.215 1.215 18 C 0.320 3.680 19 O -0.432 6.432 20 C -0.168 4.168 21 H 0.148 0.852 22 C -0.147 4.147 23 C -0.014 4.014 24 N -0.368 5.368 25 C -0.046 4.046 26 C 0.287 3.713 27 O -0.388 6.388 28 C -0.160 4.160 29 C -0.203 4.203 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.142 0.858 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.188 0.812 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.064 -15.473 2.958 15.888 hybrid contribution 0.350 1.133 -1.040 1.578 sum -1.714 -14.340 1.917 14.569 Atomic orbital electron populations 1.21793 0.91156 1.04187 1.03176 1.23062 0.97062 0.81018 1.02077 1.86030 1.18240 1.31115 1.89149 1.18963 0.82779 0.93935 0.99259 1.20317 0.93769 0.95826 1.05628 1.20886 0.92619 0.98420 1.01541 1.18262 0.82962 0.94859 1.02954 1.45905 1.04075 1.10094 1.65016 1.19335 0.94198 0.76572 0.97002 1.21024 1.35953 1.01221 0.93146 0.94857 1.25196 0.95190 0.97793 0.98650 1.69957 1.41028 1.16494 1.29367 0.85827 0.77610 0.77940 0.81852 1.19971 1.20688 1.21455 1.20327 0.89047 0.83082 0.75574 1.90270 1.76296 1.26542 1.50115 1.22154 0.91717 1.03513 0.99455 0.85223 1.22742 0.95108 0.93032 1.03786 1.22324 0.97273 0.93309 0.88524 1.48279 1.25817 1.39154 1.23560 1.21618 0.94752 1.02461 0.85751 1.20653 0.81823 0.81575 0.87298 1.91007 1.64026 1.30184 1.53602 1.22295 0.96151 0.97318 1.00202 1.21355 0.92949 0.98825 1.07190 0.91991 0.88026 0.91696 0.91681 0.91161 0.83950 0.85449 0.95320 0.94191 0.92870 0.89040 0.85806 0.87385 0.88673 0.93059 0.89868 0.89897 0.81235 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.04 0.86 5.46 71.98 0.39 1.26 16 3 O -0.33 -9.63 10.14 -93.17 -0.94 -10.57 16 4 C 0.10 3.23 6.69 22.50 0.15 3.38 16 5 C -0.14 -4.98 9.98 22.35 0.22 -4.75 16 6 C -0.11 -4.83 9.05 22.38 0.20 -4.63 16 7 C 0.10 4.56 6.48 38.11 0.25 4.80 16 8 N -0.53 -24.38 2.69 -635.16 -1.71 -26.09 16 9 C 0.25 12.55 4.21 85.63 0.36 12.91 16 10 C -0.47 -26.85 5.81 25.60 0.15 -26.70 16 11 H 0.03 2.06 7.62 -2.91 -0.02 2.04 16 12 C 0.03 1.70 5.46 84.65 0.46 2.16 16 13 N -0.93 -53.64 13.29 21.45 0.28 -53.35 16 14 Si 0.94 47.57 29.54 68.60 2.03 49.59 16 15 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 16 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 18 C 0.53 22.16 6.70 87.66 0.59 22.74 16 19 O -0.55 -23.00 12.07 -3.06 -0.04 -23.04 16 20 C -0.14 -5.06 2.43 -11.49 -0.03 -5.09 16 21 H 0.13 4.53 6.45 -2.39 -0.02 4.51 16 22 C -0.11 -2.49 6.60 31.71 0.21 -2.28 16 23 C 0.11 2.04 7.35 86.83 0.64 2.67 16 24 N -0.63 -18.47 3.33 -842.87 -2.81 -21.28 16 25 C 0.10 2.32 11.14 127.77 1.42 3.74 16 26 C 0.50 20.20 7.38 87.90 0.65 20.85 16 27 O -0.51 -26.56 13.51 -3.04 -0.04 -26.60 16 28 C -0.14 -5.46 8.98 22.38 0.20 -5.26 16 29 C -0.18 -6.04 9.03 22.35 0.20 -5.84 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 35 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.13 5.83 6.17 -2.91 -0.02 5.81 16 37 H 0.03 1.51 6.79 -2.38 -0.02 1.49 16 38 H 0.04 2.05 5.76 -2.39 -0.01 2.04 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.09 2.28 6.90 -2.39 -0.02 2.27 16 41 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.58 7.53 -2.39 -0.02 1.56 16 45 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.17 6.75 4.70 -47.68 -0.22 6.52 16 48 H 0.15 3.92 6.29 -2.91 -0.02 3.90 16 Total: -1.00 -75.72 383.96 4.35 -71.37 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.77 Total: 21.44 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.81 Total: 18.54 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -4.23 Total: -100.73 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -1.02 Total: -60.21 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.59 kcal Total: -75.72 4.35 -71.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589835848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.638 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds