Wall clock time and date at job start Sat Apr 11 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47146 * 2 1 4 4 C 1.35973 * 117.00224 * 180.02562 * 3 2 1 5 5 C 1.38723 * 119.98300 * 179.97438 * 4 3 2 6 6 C 1.38086 * 120.00929 * 180.02562 * 5 4 3 7 7 C 1.38843 * 119.98794 * 359.97438 * 6 5 4 8 8 N 1.40115 * 120.01749 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99632 * 7.23206 * 8 7 6 10 10 C 1.50706 * 109.47401 * 84.97946 * 9 8 7 11 11 H 1.08000 * 119.99479 * 355.07896 * 10 9 8 12 12 C 1.37869 * 120.00200 * 175.07784 * 10 9 8 13 13 N 1.31521 * 120.00076 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00175 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47071 * 90.00212 * 14 12 10 16 16 H 1.48502 * 109.47149 * 330.00228 * 14 12 10 17 17 H 1.48495 * 109.47359 * 210.00156 * 14 12 10 18 18 C 1.34773 * 120.00366 * 187.22833 * 8 7 6 19 19 O 1.21293 * 119.99881 * 355.59649 * 18 8 7 20 20 C 1.50699 * 119.99984 * 175.59371 * 18 8 7 21 21 H 1.08994 * 110.43761 * 324.65260 * 20 18 8 22 22 C 1.54628 * 110.48422 * 202.11337 * 20 18 8 23 23 C 1.54483 * 101.76429 * 216.52599 * 22 20 18 24 24 N 1.46764 * 105.47357 * 25.41590 * 23 22 20 25 25 C 1.46500 * 124.34935 * 162.98831 * 24 23 22 26 26 C 1.34418 * 111.30089 * 342.98219 * 24 23 22 27 27 O 1.21277 * 124.94258 * 180.44080 * 26 24 23 28 28 C 1.38846 * 119.97166 * 0.27791 * 7 6 5 29 29 C 1.38089 * 119.97967 * 359.46334 * 28 7 6 30 30 H 1.09000 * 109.46966 * 60.00142 * 1 2 3 31 31 H 1.08999 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46776 * 299.99965 * 1 2 3 33 33 H 1.08999 * 109.47085 * 239.99769 * 2 1 3 34 34 H 1.09000 * 109.46966 * 119.99858 * 2 1 3 35 35 H 1.07997 * 119.99359 * 0.02562 * 5 4 3 36 36 H 1.07999 * 120.00396 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47502 * 324.97813 * 9 8 7 38 38 H 1.08998 * 109.47064 * 204.97616 * 9 8 7 39 39 H 0.96998 * 120.00067 * 180.02562 * 13 12 10 40 40 H 1.08997 * 110.97132 * 334.64235 * 22 20 18 41 41 H 1.08999 * 110.97025 * 98.36830 * 22 20 18 42 42 H 1.09000 * 110.24443 * 144.41825 * 23 22 20 43 43 H 1.08998 * 110.24268 * 266.41490 * 23 22 20 44 44 H 1.08996 * 109.47323 * 89.99551 * 25 24 23 45 45 H 1.08995 * 109.46975 * 210.00080 * 25 24 23 46 46 H 1.09005 * 109.46968 * 329.99545 * 25 24 23 47 47 H 1.08004 * 120.01137 * 179.72835 * 28 7 6 48 48 H 1.08004 * 119.98810 * 180.28041 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 3.8842 2.8075 -0.0011 6 6 5.2531 2.9891 -0.0022 7 6 6.0991 1.8883 -0.0022 8 7 7.4882 2.0718 -0.0038 9 6 8.0496 3.4157 0.1542 10 6 8.1521 3.7482 1.6205 11 1 7.7586 3.0644 2.3580 12 6 8.7483 4.9252 2.0205 13 7 8.8383 5.2151 3.3002 14 14 9.4297 6.1077 0.7449 15 1 8.3709 7.0695 0.3460 16 1 9.8798 5.3446 -0.4469 17 1 10.5800 6.8489 1.3215 18 6 8.3079 1.0121 -0.1507 19 8 7.8469 -0.1087 -0.2012 20 6 9.7970 1.2197 -0.2521 21 1 10.0170 2.1403 -0.7926 22 6 10.4658 0.0112 -0.9472 23 6 11.7977 -0.1003 -0.1726 24 7 11.5373 0.4975 1.1422 25 6 12.3834 0.3008 2.3219 26 6 10.4227 1.2486 1.1250 27 8 9.9829 1.8608 2.0750 28 6 5.5682 0.6054 -0.0069 29 6 4.1991 0.4252 -0.0004 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2259 3.6637 -0.0007 36 1 5.6654 3.9873 -0.0031 37 1 7.4013 4.1406 -0.3382 38 1 9.0415 3.4504 -0.2964 39 1 9.2574 6.0434 3.5816 40 1 9.8662 -0.8907 -0.8238 41 1 10.6437 0.2175 -2.0026 42 1 12.0831 -1.1464 -0.0616 43 1 12.5820 0.4525 -0.6897 44 1 13.1512 1.0739 2.3513 45 1 11.7717 0.3618 3.2219 46 1 12.8569 -0.6796 2.2701 47 1 6.2258 -0.2514 -0.0113 48 1 3.7860 -0.5727 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589835850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:32 Heat of formation + Delta-G solvation = -38.253513 kcal Electronic energy + Delta-G solvation = -31467.699090 eV Core-core repulsion = 27296.786329 eV Total energy + Delta-G solvation = -4170.912760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.89115 -39.79659 -38.89430 -36.96570 -35.89267 -35.06194 -32.71522 -32.37596 -31.66799 -30.45809 -29.06841 -28.04897 -27.02275 -26.47456 -23.91276 -23.22382 -22.44977 -21.75733 -20.90267 -19.81345 -18.53413 -17.94196 -17.44375 -16.88659 -16.55535 -16.22187 -15.94592 -15.88012 -15.15705 -14.73302 -14.51908 -14.29534 -13.98649 -13.62455 -13.42590 -13.30324 -13.24823 -13.03821 -12.92979 -12.63670 -12.55737 -12.43848 -12.19805 -12.10885 -12.05350 -11.89333 -11.79504 -11.63714 -11.42393 -11.13398 -10.91038 -10.76770 -10.60315 -10.54590 -10.20963 -9.57409 -9.15516 -8.89978 -8.83714 -8.51942 -8.48404 -8.38759 -6.95025 -6.01072 -3.97130 1.77566 1.89312 2.82296 3.14538 3.21872 3.25136 3.30865 3.35395 3.43857 3.62004 4.34492 4.37236 4.47972 4.65292 4.84249 4.89917 4.96929 5.11983 5.13517 5.19609 5.27549 5.30801 5.37620 5.44656 5.47583 5.48258 5.54056 5.69246 5.72376 5.75886 5.84407 5.91631 5.92608 5.98979 6.03573 6.13066 6.23476 6.44202 6.52413 6.68787 6.80107 6.84512 6.90718 7.04315 7.39296 7.49008 7.50384 7.83981 7.92667 8.49650 8.59545 8.71931 9.12871 9.55168 11.13030 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.003902 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.548648 B = 7173.965590 C = 9043.650629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.090 3.910 5 C -0.131 4.131 6 C -0.102 4.102 7 C 0.137 3.863 8 N -0.516 5.516 9 C 0.198 3.802 10 C -0.502 4.502 11 H 0.084 0.916 12 C 0.082 3.918 13 N -0.886 5.886 14 Si 0.858 3.142 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.284 1.284 18 C 0.540 3.460 19 O -0.539 6.539 20 C -0.144 4.144 21 H 0.128 0.872 22 C -0.121 4.121 23 C 0.108 3.892 24 N -0.635 5.635 25 C 0.104 3.896 26 C 0.512 3.488 27 O -0.440 6.440 28 C -0.137 4.137 29 C -0.191 4.191 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.262 0.738 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.182 0.818 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -11.373 -10.349 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.237 6.237 4 C 0.045 3.955 5 C -0.150 4.150 6 C -0.122 4.122 7 C 0.042 3.958 8 N -0.234 5.234 9 C 0.078 3.922 10 C -0.540 4.540 11 H 0.102 0.898 12 C -0.121 4.121 13 N -0.525 5.525 14 Si 0.685 3.315 15 H -0.199 1.199 16 H -0.194 1.194 17 H -0.210 1.210 18 C 0.329 3.671 19 O -0.420 6.420 20 C -0.169 4.169 21 H 0.146 0.854 22 C -0.159 4.159 23 C -0.015 4.015 24 N -0.374 5.374 25 C -0.038 4.038 26 C 0.295 3.705 27 O -0.307 6.307 28 C -0.156 4.156 29 C -0.210 4.210 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.198 0.802 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.473 -11.258 -9.608 14.874 hybrid contribution 0.727 0.780 -0.506 1.180 sum -0.746 -10.478 -10.114 14.582 Atomic orbital electron populations 1.21759 0.93251 1.02445 1.03312 1.22662 0.95346 0.82797 1.01172 1.86014 1.19678 1.28400 1.89604 1.18942 0.81703 0.94346 1.00546 1.20115 0.94346 0.94520 1.06056 1.20833 0.91736 0.98875 1.00791 1.17895 0.82687 0.93948 1.01228 1.45550 1.03536 1.10006 1.64305 1.20187 0.94126 0.77839 1.00052 1.21016 1.38553 1.05375 0.89068 0.89839 1.24703 0.95388 0.97296 0.94702 1.69875 1.44097 1.24350 1.14160 0.87167 0.79654 0.82326 0.82358 1.19947 1.19371 1.20974 1.19767 0.87734 0.83796 0.75759 1.90230 1.75316 1.24250 1.52157 1.22069 0.93527 1.02562 0.98723 0.85429 1.22637 0.95352 0.98514 0.99378 1.21994 0.97440 0.98632 0.83458 1.48077 1.27073 1.51314 1.10964 1.21427 0.94279 1.00511 0.87602 1.20156 0.80961 0.79756 0.89604 1.91126 1.62830 1.38874 1.37853 1.22543 0.95226 0.98605 0.99257 1.21123 0.94056 0.97330 1.08510 0.91728 0.90739 0.91644 0.92427 0.92334 0.85439 0.84154 0.94682 0.94411 0.92793 0.88152 0.89200 0.90592 0.91503 0.93004 0.90673 0.91632 0.80188 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.65 5.46 37.16 0.20 0.85 16 3 O -0.32 -4.99 10.14 -19.66 -0.20 -5.19 16 4 C 0.09 1.55 6.69 -39.23 -0.26 1.28 16 5 C -0.13 -2.33 9.98 -39.46 -0.39 -2.73 16 6 C -0.10 -2.00 9.25 -39.41 -0.36 -2.37 16 7 C 0.14 2.86 6.47 -83.62 -0.54 2.32 16 8 N -0.52 -11.08 2.69 -114.70 -0.31 -11.39 16 9 C 0.20 4.48 3.61 -5.19 -0.02 4.46 16 10 C -0.50 -13.77 7.28 -34.44 -0.25 -14.02 16 11 H 0.08 2.69 7.91 -52.49 -0.42 2.27 16 12 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 13 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 14 Si 0.86 20.27 27.57 -169.99 -4.69 15.58 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.27 -5.86 6.40 56.52 0.36 -5.50 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.54 10.82 6.72 -10.99 -0.07 10.75 16 19 O -0.54 -10.95 12.02 5.55 0.07 -10.88 16 20 C -0.14 -2.47 2.48 -91.78 -0.23 -2.70 16 21 H 0.13 2.07 6.26 -51.93 -0.33 1.74 16 22 C -0.12 -1.47 6.62 -25.10 -0.17 -1.64 16 23 C 0.11 1.18 7.35 -3.12 -0.02 1.15 16 24 N -0.64 -9.64 3.33 -180.29 -0.60 -10.24 16 25 C 0.10 1.33 10.96 59.85 0.66 1.99 16 26 C 0.51 10.10 7.42 -10.86 -0.08 10.01 16 27 O -0.44 -11.08 14.44 5.56 0.08 -11.00 16 28 C -0.14 -2.67 9.04 -39.41 -0.36 -3.03 16 29 C -0.19 -3.27 9.03 -39.46 -0.36 -3.63 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.14 2.75 6.12 -52.49 -0.32 2.42 16 37 H 0.04 0.76 5.89 -51.93 -0.31 0.46 16 38 H 0.04 0.83 4.38 -51.93 -0.23 0.60 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 1.31 6.90 -51.93 -0.36 0.96 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.18 3.64 4.53 -56.21 -0.25 3.38 16 48 H 0.12 1.74 6.29 -52.48 -0.33 1.41 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -34.87 381.91 -7.82 -42.69 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.72 Total: 6.96 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.97 Total: 3.97 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.14 Total: -47.89 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.69 Total: 15.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.87 -7.82 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589835850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.436 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds