Wall clock time and date at job start Sat Apr 11 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47146 * 2 1 4 4 C 1.35973 * 117.00224 * 180.02562 * 3 2 1 5 5 C 1.38723 * 119.98300 * 179.97438 * 4 3 2 6 6 C 1.38086 * 120.00929 * 180.02562 * 5 4 3 7 7 C 1.38843 * 119.98794 * 359.97438 * 6 5 4 8 8 N 1.40115 * 120.01749 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99632 * 7.23206 * 8 7 6 10 10 C 1.50706 * 109.47401 * 84.97946 * 9 8 7 11 11 H 1.08000 * 119.99479 * 355.07896 * 10 9 8 12 12 C 1.37869 * 120.00200 * 175.07784 * 10 9 8 13 13 N 1.31521 * 120.00076 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00175 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47071 * 90.00212 * 14 12 10 16 16 H 1.48502 * 109.47149 * 330.00228 * 14 12 10 17 17 H 1.48495 * 109.47359 * 210.00156 * 14 12 10 18 18 C 1.34773 * 120.00366 * 187.22833 * 8 7 6 19 19 O 1.21293 * 119.99881 * 355.59649 * 18 8 7 20 20 C 1.50699 * 119.99984 * 175.59371 * 18 8 7 21 21 H 1.08994 * 110.43761 * 324.65260 * 20 18 8 22 22 C 1.54628 * 110.48422 * 202.11337 * 20 18 8 23 23 C 1.54483 * 101.76429 * 216.52599 * 22 20 18 24 24 N 1.46764 * 105.47357 * 25.41590 * 23 22 20 25 25 C 1.46500 * 124.34935 * 162.98831 * 24 23 22 26 26 C 1.34418 * 111.30089 * 342.98219 * 24 23 22 27 27 O 1.21277 * 124.94258 * 180.44080 * 26 24 23 28 28 C 1.38846 * 119.97166 * 0.27791 * 7 6 5 29 29 C 1.38089 * 119.97967 * 359.46334 * 28 7 6 30 30 H 1.09000 * 109.46966 * 60.00142 * 1 2 3 31 31 H 1.08999 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46776 * 299.99965 * 1 2 3 33 33 H 1.08999 * 109.47085 * 239.99769 * 2 1 3 34 34 H 1.09000 * 109.46966 * 119.99858 * 2 1 3 35 35 H 1.07997 * 119.99359 * 0.02562 * 5 4 3 36 36 H 1.07999 * 120.00396 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47502 * 324.97813 * 9 8 7 38 38 H 1.08998 * 109.47064 * 204.97616 * 9 8 7 39 39 H 0.96998 * 120.00067 * 180.02562 * 13 12 10 40 40 H 1.08997 * 110.97132 * 334.64235 * 22 20 18 41 41 H 1.08999 * 110.97025 * 98.36830 * 22 20 18 42 42 H 1.09000 * 110.24443 * 144.41825 * 23 22 20 43 43 H 1.08998 * 110.24268 * 266.41490 * 23 22 20 44 44 H 1.08996 * 109.47323 * 89.99551 * 25 24 23 45 45 H 1.08995 * 109.46975 * 210.00080 * 25 24 23 46 46 H 1.09005 * 109.46968 * 329.99545 * 25 24 23 47 47 H 1.08004 * 120.01137 * 179.72835 * 28 7 6 48 48 H 1.08004 * 119.98810 * 180.28041 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 3.8842 2.8075 -0.0011 6 6 5.2531 2.9891 -0.0022 7 6 6.0991 1.8883 -0.0022 8 7 7.4882 2.0718 -0.0038 9 6 8.0496 3.4157 0.1542 10 6 8.1521 3.7482 1.6205 11 1 7.7586 3.0644 2.3580 12 6 8.7483 4.9252 2.0205 13 7 8.8383 5.2151 3.3002 14 14 9.4297 6.1077 0.7449 15 1 8.3709 7.0695 0.3460 16 1 9.8798 5.3446 -0.4469 17 1 10.5800 6.8489 1.3215 18 6 8.3079 1.0121 -0.1507 19 8 7.8469 -0.1087 -0.2012 20 6 9.7970 1.2197 -0.2521 21 1 10.0170 2.1403 -0.7926 22 6 10.4658 0.0112 -0.9472 23 6 11.7977 -0.1003 -0.1726 24 7 11.5373 0.4975 1.1422 25 6 12.3834 0.3008 2.3219 26 6 10.4227 1.2486 1.1250 27 8 9.9829 1.8608 2.0750 28 6 5.5682 0.6054 -0.0069 29 6 4.1991 0.4252 -0.0004 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2259 3.6637 -0.0007 36 1 5.6654 3.9873 -0.0031 37 1 7.4013 4.1406 -0.3382 38 1 9.0415 3.4504 -0.2964 39 1 9.2574 6.0434 3.5816 40 1 9.8662 -0.8907 -0.8238 41 1 10.6437 0.2175 -2.0026 42 1 12.0831 -1.1464 -0.0616 43 1 12.5820 0.4525 -0.6897 44 1 13.1512 1.0739 2.3513 45 1 11.7717 0.3618 3.2219 46 1 12.8569 -0.6796 2.2701 47 1 6.2258 -0.2514 -0.0113 48 1 3.7860 -0.5727 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589835850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:31 Heat of formation + Delta-G solvation = -62.138241 kcal Electronic energy + Delta-G solvation = -31468.734809 eV Core-core repulsion = 27296.786329 eV Total energy + Delta-G solvation = -4171.948480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.34232 -41.13001 -40.25280 -38.39913 -37.32230 -36.67113 -34.45364 -33.87114 -32.68679 -31.85569 -30.57724 -29.67804 -28.35430 -27.62648 -25.26500 -24.60153 -24.01611 -23.03566 -22.15566 -21.21334 -19.97351 -19.29285 -19.13540 -18.62711 -18.09364 -17.50228 -17.22962 -16.98739 -16.50341 -16.25487 -16.11166 -15.73224 -15.56674 -15.03323 -14.72493 -14.65265 -14.49610 -14.41561 -14.32988 -14.14350 -13.75262 -13.66228 -13.59626 -13.38655 -13.28154 -13.20215 -13.04100 -12.86042 -12.67819 -12.57256 -12.47257 -12.13960 -11.89758 -11.86108 -11.73469 -11.58505 -10.75148 -10.64288 -10.52553 -10.32496 -9.95170 -9.59761 -8.46131 -8.16176 -6.17006 0.30670 0.42082 1.31748 1.34925 1.38058 1.44894 1.69103 2.01142 2.23504 2.33018 2.37685 2.87792 3.14386 3.24648 3.41302 3.65347 3.91093 3.95962 4.02586 4.08050 4.09045 4.20037 4.28812 4.37993 4.39949 4.42515 4.47837 4.50358 4.57566 4.65166 4.72740 4.76120 4.81735 4.86597 4.96579 4.98776 5.05249 5.12677 5.20029 5.24089 5.33435 5.43903 5.45074 5.56969 5.69855 6.00950 6.12668 6.19746 6.49227 6.52322 6.82921 7.01734 7.31283 7.39159 9.02825 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.003902 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.548648 B = 7173.965590 C = 9043.650629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.095 3.905 5 C -0.135 4.135 6 C -0.116 4.116 7 C 0.106 3.894 8 N -0.527 5.527 9 C 0.208 3.792 10 C -0.485 4.485 11 H 0.017 0.983 12 C 0.016 3.984 13 N -0.948 5.948 14 Si 0.930 3.070 15 H -0.260 1.260 16 H -0.233 1.233 17 H -0.289 1.289 18 C 0.530 3.470 19 O -0.547 6.547 20 C -0.147 4.147 21 H 0.138 0.862 22 C -0.109 4.109 23 C 0.106 3.894 24 N -0.631 5.631 25 C 0.098 3.902 26 C 0.497 3.503 27 O -0.517 6.517 28 C -0.149 4.149 29 C -0.186 4.186 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.109 0.891 47 H 0.174 0.826 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.411 -12.700 -13.870 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.049 3.951 5 C -0.154 4.154 6 C -0.136 4.136 7 C 0.011 3.989 8 N -0.245 5.245 9 C 0.087 3.913 10 C -0.524 4.524 11 H 0.035 0.965 12 C -0.181 4.181 13 N -0.589 5.589 14 Si 0.752 3.248 15 H -0.184 1.184 16 H -0.156 1.156 17 H -0.216 1.216 18 C 0.320 3.680 19 O -0.429 6.429 20 C -0.171 4.171 21 H 0.156 0.844 22 C -0.147 4.147 23 C -0.015 4.015 24 N -0.367 5.367 25 C -0.043 4.043 26 C 0.281 3.719 27 O -0.390 6.390 28 C -0.168 4.168 29 C -0.205 4.205 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.128 0.872 47 H 0.190 0.810 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.848 -12.665 -13.194 18.309 hybrid contribution 0.416 0.976 0.671 1.255 sum -0.433 -11.690 -12.523 17.137 Atomic orbital electron populations 1.21790 0.91058 1.04194 1.03223 1.23059 0.97131 0.81046 1.01987 1.86029 1.18240 1.31052 1.89141 1.19002 0.82772 0.94058 0.99235 1.20343 0.93896 0.95788 1.05365 1.20868 0.92613 0.98338 1.01756 1.18235 0.82810 0.94961 1.02869 1.45572 1.04133 1.09837 1.64958 1.19955 0.95369 0.79185 0.96761 1.20931 1.37224 1.03780 0.90456 0.96507 1.25651 0.95850 0.99544 0.97008 1.70089 1.46295 1.25286 1.17217 0.86004 0.78862 0.79720 0.80181 1.18430 1.15637 1.21555 1.20379 0.89025 0.83431 0.75138 1.90212 1.75909 1.24295 1.52457 1.22197 0.91413 1.05529 0.97984 0.84449 1.22747 0.95055 0.95558 1.01333 1.22388 0.97400 1.00813 0.80937 1.48295 1.25624 1.49592 1.13224 1.21599 0.93565 1.03286 0.85843 1.20730 0.81996 0.79422 0.89704 1.91096 1.65169 1.42427 1.40320 1.22539 0.96296 0.97845 1.00141 1.21370 0.93063 0.98848 1.07183 0.91525 0.88059 0.92037 0.91120 0.91940 0.83583 0.84777 0.93009 0.92680 0.93045 0.89183 0.85279 0.87298 0.88303 0.92161 0.93846 0.87243 0.80985 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.04 0.89 5.46 71.98 0.39 1.28 16 3 O -0.33 -9.70 10.14 -93.25 -0.95 -10.64 16 4 C 0.09 3.21 6.69 22.50 0.15 3.36 16 5 C -0.13 -4.80 9.98 22.35 0.22 -4.57 16 6 C -0.12 -4.65 9.25 22.38 0.21 -4.45 16 7 C 0.11 4.55 6.47 38.11 0.25 4.80 16 8 N -0.53 -23.29 2.69 -635.17 -1.71 -25.00 16 9 C 0.21 9.58 3.61 85.64 0.31 9.88 16 10 C -0.49 -28.14 7.28 25.60 0.19 -27.96 16 11 H 0.02 1.17 7.91 -2.91 -0.02 1.15 16 12 C 0.02 0.95 5.47 84.65 0.46 1.42 16 13 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 14 Si 0.93 42.13 27.57 68.60 1.89 44.02 16 15 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.23 -9.14 6.40 99.48 0.64 -8.50 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 18 C 0.53 21.58 6.72 87.66 0.59 22.16 16 19 O -0.55 -22.60 12.02 -3.07 -0.04 -22.64 16 20 C -0.15 -4.89 2.48 -11.55 -0.03 -4.92 16 21 H 0.14 4.20 6.26 -2.39 -0.01 4.19 16 22 C -0.11 -2.31 6.62 31.65 0.21 -2.10 16 23 C 0.11 1.87 7.35 86.83 0.64 2.50 16 24 N -0.63 -18.25 3.33 -842.90 -2.81 -21.06 16 25 C 0.10 2.44 10.96 127.77 1.40 3.84 16 26 C 0.50 19.95 7.42 87.90 0.65 20.60 16 27 O -0.52 -27.85 14.44 -3.02 -0.04 -27.89 16 28 C -0.15 -5.92 9.04 22.38 0.20 -5.72 16 29 C -0.19 -6.25 9.03 22.35 0.20 -6.05 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 34 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 35 H 0.15 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.13 5.42 6.12 -2.91 -0.02 5.41 16 37 H 0.05 2.23 5.89 -2.39 -0.01 2.21 16 38 H 0.06 2.35 4.38 -2.39 -0.01 2.34 16 39 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.09 2.14 6.90 -2.39 -0.02 2.12 16 41 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.04 1.35 7.93 -2.39 -0.02 1.33 16 46 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.17 7.13 4.53 -61.92 -0.28 6.85 16 48 H 0.15 4.04 6.29 -2.91 -0.02 4.02 16 Total: -1.00 -85.31 381.91 4.08 -81.23 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.65 Total: 30.45 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.78 Total: 12.59 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -4.22 Total: -107.12 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -1.03 Total: -61.17 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.89 Total: 44.02 kcal Total: -85.31 4.08 -81.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589835850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.093 kcal (2) G-P(sol) polarization free energy of solvation -85.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds