Wall clock time and date at job start Sat Apr 11 2020 07:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46936 * 2 1 4 4 C 1.46491 * 119.99950 * 85.00330 * 3 2 1 5 5 C 1.50702 * 109.46957 * 274.99534 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 S 1.65604 * 119.99536 * 264.99951 * 3 2 1 14 14 O 1.42092 * 106.40380 * 23.54255 * 13 3 2 15 15 O 1.42101 * 106.39783 * 156.46152 * 13 3 2 16 16 N 1.65603 * 107.21518 * 270.00010 * 13 3 2 17 17 C 1.47184 * 125.66105 * 90.03504 * 16 13 3 18 18 C 1.53622 * 107.09257 * 181.52646 * 17 16 13 19 19 C 1.54446 * 103.73015 * 21.46739 * 18 17 16 20 20 C 1.47490 * 125.66283 * 269.71432 * 16 13 3 21 21 H 1.08999 * 110.35674 * 274.89034 * 20 16 13 22 22 C 1.53003 * 110.34996 * 37.17382 * 20 16 13 23 23 C 1.52340 * 110.73998 * 263.15550 * 18 17 16 24 24 C 1.53233 * 109.23538 * 291.79026 * 23 18 17 25 25 O 1.42915 * 109.31957 * 303.64752 * 24 23 18 26 26 C 1.42929 * 114.23108 * 61.74948 * 25 24 23 27 27 C 1.52337 * 110.73958 * 139.77524 * 18 17 16 28 28 H 1.09000 * 109.46902 * 299.99945 * 1 2 3 29 29 H 1.08998 * 109.47206 * 60.00216 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46902 * 240.00055 * 2 1 3 32 32 H 1.09005 * 109.46932 * 120.00043 * 2 1 3 33 33 H 1.09004 * 109.47166 * 154.99800 * 4 3 2 34 34 H 1.08994 * 109.47507 * 34.99507 * 4 3 2 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.91025 * 300.88460 * 17 16 13 37 37 H 1.08994 * 109.91605 * 61.97091 * 17 16 13 38 38 H 1.08998 * 111.01583 * 83.31929 * 19 18 17 39 39 H 1.09001 * 111.01477 * 207.16728 * 19 18 17 40 40 H 1.08996 * 109.47453 * 58.54482 * 22 20 16 41 41 H 1.09003 * 109.47024 * 178.54337 * 22 20 16 42 42 H 1.09003 * 109.46924 * 298.53918 * 22 20 16 43 43 H 1.09009 * 109.51088 * 51.71684 * 23 18 17 44 44 H 1.09003 * 109.51365 * 171.86101 * 23 18 17 45 45 H 1.08995 * 109.50151 * 183.68737 * 24 23 18 46 46 H 1.09003 * 109.52069 * 63.60818 * 24 23 18 47 47 H 1.08998 * 109.49357 * 178.29258 * 26 25 24 48 48 H 1.08997 * 109.52371 * 58.21130 * 26 25 24 49 49 H 1.08998 * 109.51367 * 188.13313 * 27 18 17 50 50 H 1.09002 * 109.51300 * 308.28087 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7288 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7211 3.4629 2.7970 8 7 1.7668 3.6265 3.5777 9 14 -0.9197 4.2251 3.2616 10 1 -1.6962 3.2645 4.0859 11 1 -0.6855 5.4683 4.0394 12 1 -1.6821 4.5487 2.0290 13 16 2.4121 2.1202 -1.4288 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.5485 0.6613 -2.4576 18 6 6.0801 0.7775 -2.4312 19 6 6.3578 1.6882 -1.2151 20 6 5.1428 2.6534 -1.2700 21 1 5.3239 3.4546 -1.9866 22 6 4.8612 3.2329 0.1178 23 6 6.5938 1.4301 -3.7082 24 6 6.3616 0.4812 -4.8888 25 8 6.9934 -0.7721 -4.6193 26 6 6.4834 -1.4509 -3.4696 27 6 6.7212 -0.5890 -2.2251 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9080 2.8918 1.1512 34 1 2.4690 1.4183 2.0480 35 1 1.6860 4.1433 4.3946 36 1 4.2383 -0.2667 -1.9773 37 1 4.1893 0.6847 -3.4864 38 1 6.3631 1.1131 -0.2892 39 1 7.2937 2.2327 -1.3401 40 1 4.6966 2.4196 0.8245 41 1 5.7140 3.8292 0.4423 42 1 3.9726 3.8627 0.0751 43 1 6.0582 2.3637 -3.8808 44 1 7.6600 1.6342 -3.6094 45 1 6.7863 0.9156 -5.7937 46 1 5.2915 0.3267 -5.0270 47 1 6.9958 -2.4060 -3.3541 48 1 5.4144 -1.6242 -3.5933 49 1 7.7926 -0.4681 -2.0653 50 1 6.2752 -1.0731 -1.3563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592101168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:52 Heat of formation + Delta-G solvation = -123.654718 kcal Electronic energy + Delta-G solvation = -31712.600519 eV Core-core repulsion = 27673.428436 eV Total energy + Delta-G solvation = -4039.172083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.61156 -37.75963 -36.68929 -36.07632 -35.14893 -33.52463 -32.59311 -31.41478 -31.06171 -29.82350 -27.86758 -26.74888 -25.36959 -23.94877 -23.21325 -22.73769 -21.84788 -21.18653 -19.04657 -18.16023 -17.28363 -16.77190 -16.42153 -16.24923 -16.11678 -15.88359 -15.26891 -14.96898 -14.58517 -14.40916 -14.05189 -13.73808 -13.46286 -13.32200 -13.15682 -12.90814 -12.73090 -12.60988 -12.26694 -12.14220 -12.08769 -11.66846 -11.55695 -11.50535 -11.48901 -11.39138 -11.35905 -11.20301 -11.06934 -11.00381 -10.95729 -10.62254 -10.53549 -10.42436 -10.31760 -10.17713 -9.90255 -9.62054 -9.53605 -8.79974 -8.41263 -8.06731 -6.05892 -4.07986 1.16852 3.30770 3.37586 3.43094 3.50023 3.67799 4.05109 4.20435 4.41730 4.44569 4.47742 4.78004 4.85427 4.90610 4.97144 5.08624 5.20701 5.26400 5.28608 5.31761 5.37745 5.44877 5.46062 5.48161 5.52816 5.68886 5.74482 5.80944 5.81891 5.85254 5.85309 5.93781 5.97129 6.04216 6.10933 6.15973 6.29758 6.37400 6.47087 6.59557 6.74449 6.79332 6.97973 6.98926 7.25132 7.45648 7.64540 7.92273 8.23128 8.93514 9.56141 11.02636 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003668 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.372424 B = 7631.509576 C = 8078.351831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.790 3.210 14 O -0.995 6.995 15 O -0.959 6.959 16 N -1.020 6.020 17 C 0.131 3.869 18 C -0.070 4.070 19 C -0.114 4.114 20 C 0.155 3.845 21 H 0.072 0.928 22 C -0.197 4.197 23 C -0.141 4.141 24 C 0.057 3.943 25 O -0.384 6.384 26 C 0.058 3.942 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 -8.728 -11.355 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.563 4.563 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.801 3.199 14 O -0.979 6.979 15 O -0.943 6.943 16 N -0.858 5.858 17 C 0.005 3.995 18 C -0.071 4.071 19 C -0.153 4.153 20 C 0.049 3.951 21 H 0.090 0.910 22 C -0.255 4.255 23 C -0.179 4.179 24 C -0.020 4.020 25 O -0.303 6.303 26 C -0.019 4.019 27 C -0.177 4.177 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.072 0.928 47 H 0.111 0.889 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.737 -8.179 -11.838 18.569 hybrid contribution -0.943 0.359 0.911 1.359 sum 10.794 -7.821 -10.927 17.236 Atomic orbital electron populations 1.22258 0.96361 1.00821 1.03660 1.20934 0.94835 0.82427 1.00826 1.57824 1.77992 1.22930 1.24519 1.19368 0.98049 0.91399 0.78869 1.21538 0.96385 1.31846 1.06559 0.92060 1.24901 0.96743 0.96057 0.96256 1.69911 1.29156 1.40934 1.13549 0.86578 0.84025 0.78796 0.78564 1.20701 1.21121 1.19755 1.01731 0.71623 0.73654 0.72910 1.93519 1.69878 1.76603 1.57928 1.93594 1.85039 1.30121 1.85550 1.59587 1.23881 1.34072 1.68283 1.21686 0.92850 0.88727 0.96216 1.21057 0.94281 0.95822 0.95981 1.22926 0.97824 0.96959 0.97610 1.21604 0.85027 0.92210 0.96271 0.90983 1.22719 1.04802 1.02838 0.95131 1.22098 1.02190 0.99325 0.94252 1.22679 0.97646 0.84088 0.97557 1.87906 1.62304 1.33709 1.46361 1.22659 0.99023 0.95256 0.84982 1.22095 1.01874 0.94857 0.98900 0.90252 0.92887 0.93100 0.92500 0.91183 0.92862 0.95089 0.92805 0.91926 0.91574 0.90106 0.90214 0.90893 0.91058 0.88597 0.90341 0.90608 0.88821 0.92790 0.88855 0.92917 0.90560 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.83 37.16 0.37 -2.70 16 2 C 0.14 2.38 6.09 -4.04 -0.02 2.36 16 3 N -0.99 -20.27 2.86 -115.66 -0.33 -20.60 16 4 C 0.24 5.88 4.56 -5.20 -0.02 5.86 16 5 C -0.52 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.69 6.89 -52.49 -0.36 1.33 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 S 2.79 56.29 5.70 -107.50 -0.61 55.68 16 14 O -1.00 -21.15 16.69 -57.17 -0.95 -22.11 16 15 O -0.96 -22.71 14.71 -57.17 -0.84 -23.55 16 16 N -1.02 -15.82 3.65 -104.48 -0.38 -16.20 16 17 C 0.13 1.64 5.29 -3.35 -0.02 1.62 16 18 C -0.07 -0.70 0.53 -154.10 -0.08 -0.78 16 19 C -0.11 -1.20 5.42 -24.77 -0.13 -1.33 16 20 C 0.15 2.13 3.39 -66.18 -0.22 1.91 16 21 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 22 C -0.20 -3.17 7.53 37.16 0.28 -2.89 16 23 C -0.14 -1.29 4.74 -26.95 -0.13 -1.41 16 24 C 0.06 0.52 6.66 37.28 0.25 0.77 16 25 O -0.38 -3.97 10.75 -35.23 -0.38 -4.35 16 26 C 0.06 0.49 6.67 37.28 0.25 0.74 16 27 C -0.14 -1.18 4.78 -26.94 -0.13 -1.31 16 28 H 0.08 1.58 6.59 -51.93 -0.34 1.24 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.87 7.61 -51.93 -0.40 0.47 16 32 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 33 H 0.05 1.32 3.84 -51.93 -0.20 1.12 16 34 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 37 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16 38 H 0.08 0.85 7.94 -51.93 -0.41 0.44 16 39 H 0.08 0.70 8.00 -51.93 -0.42 0.29 16 40 H 0.07 1.22 6.89 -51.93 -0.36 0.86 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 1.92 4.77 -51.93 -0.25 1.67 16 43 H 0.08 0.74 7.64 -51.92 -0.40 0.34 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.51 6.69 -51.93 -0.35 0.16 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -32.35 383.57 -10.36 -42.71 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.35 Total: 0.84 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.01 Total: -10.09 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.03 Total: -61.51 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -2.17 Total: -50.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 56.29 SS G_CDS: -0.61 Total: 55.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.35 -10.36 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592101168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.947 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds