Wall clock time and date at job start Sat Apr 11 2020 07:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46936 * 2 1 4 4 C 1.46491 * 119.99950 * 85.00330 * 3 2 1 5 5 C 1.50702 * 109.46957 * 274.99534 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 S 1.65604 * 119.99536 * 264.99951 * 3 2 1 14 14 O 1.42092 * 106.40380 * 23.54255 * 13 3 2 15 15 O 1.42101 * 106.39783 * 156.46152 * 13 3 2 16 16 N 1.65603 * 107.21518 * 270.00010 * 13 3 2 17 17 C 1.47184 * 125.66105 * 90.03504 * 16 13 3 18 18 C 1.53622 * 107.09257 * 181.52646 * 17 16 13 19 19 C 1.54446 * 103.73015 * 21.46739 * 18 17 16 20 20 C 1.47490 * 125.66283 * 269.71432 * 16 13 3 21 21 H 1.08999 * 110.35674 * 274.89034 * 20 16 13 22 22 C 1.53003 * 110.34996 * 37.17382 * 20 16 13 23 23 C 1.52340 * 110.73998 * 263.15550 * 18 17 16 24 24 C 1.53233 * 109.23538 * 291.79026 * 23 18 17 25 25 O 1.42915 * 109.31957 * 303.64752 * 24 23 18 26 26 C 1.42929 * 114.23108 * 61.74948 * 25 24 23 27 27 C 1.52337 * 110.73958 * 139.77524 * 18 17 16 28 28 H 1.09000 * 109.46902 * 299.99945 * 1 2 3 29 29 H 1.08998 * 109.47206 * 60.00216 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46902 * 240.00055 * 2 1 3 32 32 H 1.09005 * 109.46932 * 120.00043 * 2 1 3 33 33 H 1.09004 * 109.47166 * 154.99800 * 4 3 2 34 34 H 1.08994 * 109.47507 * 34.99507 * 4 3 2 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.91025 * 300.88460 * 17 16 13 37 37 H 1.08994 * 109.91605 * 61.97091 * 17 16 13 38 38 H 1.08998 * 111.01583 * 83.31929 * 19 18 17 39 39 H 1.09001 * 111.01477 * 207.16728 * 19 18 17 40 40 H 1.08996 * 109.47453 * 58.54482 * 22 20 16 41 41 H 1.09003 * 109.47024 * 178.54337 * 22 20 16 42 42 H 1.09003 * 109.46924 * 298.53918 * 22 20 16 43 43 H 1.09009 * 109.51088 * 51.71684 * 23 18 17 44 44 H 1.09003 * 109.51365 * 171.86101 * 23 18 17 45 45 H 1.08995 * 109.50151 * 183.68737 * 24 23 18 46 46 H 1.09003 * 109.52069 * 63.60818 * 24 23 18 47 47 H 1.08998 * 109.49357 * 178.29258 * 26 25 24 48 48 H 1.08997 * 109.52371 * 58.21130 * 26 25 24 49 49 H 1.08998 * 109.51367 * 188.13313 * 27 18 17 50 50 H 1.09002 * 109.51300 * 308.28087 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7288 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7211 3.4629 2.7970 8 7 1.7668 3.6265 3.5777 9 14 -0.9197 4.2251 3.2616 10 1 -1.6962 3.2645 4.0859 11 1 -0.6855 5.4683 4.0394 12 1 -1.6821 4.5487 2.0290 13 16 2.4121 2.1202 -1.4288 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.5485 0.6613 -2.4576 18 6 6.0801 0.7775 -2.4312 19 6 6.3578 1.6882 -1.2151 20 6 5.1428 2.6534 -1.2700 21 1 5.3239 3.4546 -1.9866 22 6 4.8612 3.2329 0.1178 23 6 6.5938 1.4301 -3.7082 24 6 6.3616 0.4812 -4.8888 25 8 6.9934 -0.7721 -4.6193 26 6 6.4834 -1.4509 -3.4696 27 6 6.7212 -0.5890 -2.2251 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9080 2.8918 1.1512 34 1 2.4690 1.4183 2.0480 35 1 1.6860 4.1433 4.3946 36 1 4.2383 -0.2667 -1.9773 37 1 4.1893 0.6847 -3.4864 38 1 6.3631 1.1131 -0.2892 39 1 7.2937 2.2327 -1.3401 40 1 4.6966 2.4196 0.8245 41 1 5.7140 3.8292 0.4423 42 1 3.9726 3.8627 0.0751 43 1 6.0582 2.3637 -3.8808 44 1 7.6600 1.6342 -3.6094 45 1 6.7863 0.9156 -5.7937 46 1 5.2915 0.3267 -5.0270 47 1 6.9958 -2.4060 -3.3541 48 1 5.4144 -1.6242 -3.5933 49 1 7.7926 -0.4681 -2.0653 50 1 6.2752 -1.0731 -1.3563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592101168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:51 Heat of formation + Delta-G solvation = -146.070090 kcal Electronic energy + Delta-G solvation = -31713.572522 eV Core-core repulsion = 27673.428436 eV Total energy + Delta-G solvation = -4040.144087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.44992 -38.70850 -38.31579 -37.72731 -36.85611 -34.63152 -34.45615 -32.25318 -32.07818 -31.42161 -28.77498 -28.65566 -26.48052 -24.67079 -24.64505 -23.99373 -23.41063 -22.27797 -19.96705 -19.54379 -18.77964 -18.61219 -18.03645 -17.27750 -16.94242 -16.88568 -16.70757 -16.35161 -15.70563 -15.55667 -15.34964 -14.85763 -14.79107 -14.70706 -14.60983 -14.27383 -14.03154 -13.69094 -13.62200 -13.49595 -13.19759 -13.17792 -13.08511 -12.90487 -12.85927 -12.83221 -12.77388 -12.60484 -12.37869 -12.24424 -12.16056 -12.11160 -12.00001 -11.75159 -11.60764 -11.43733 -11.30505 -11.00851 -10.51851 -10.33340 -10.01907 -9.77737 -8.16760 -6.24795 -0.39253 1.37047 1.39502 1.49279 2.03580 2.40562 2.57283 3.02893 3.13947 3.17281 3.46156 3.63889 3.65641 3.95051 4.03517 4.09696 4.16412 4.25932 4.28862 4.34314 4.38793 4.44173 4.49381 4.58140 4.63029 4.69286 4.71089 4.77062 4.79608 4.87140 4.91418 4.93833 5.00145 5.06232 5.11354 5.16647 5.20239 5.21395 5.23959 5.35006 5.39529 5.45743 5.46570 5.51388 5.62274 5.77713 6.00996 6.18279 6.32206 6.81615 7.41754 8.90540 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003668 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.372424 B = 7631.509576 C = 8078.351831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.278 1.278 13 S 2.801 3.199 14 O -1.010 7.010 15 O -1.002 7.002 16 N -1.016 6.016 17 C 0.121 3.879 18 C -0.063 4.063 19 C -0.103 4.103 20 C 0.149 3.851 21 H 0.080 0.920 22 C -0.194 4.194 23 C -0.139 4.139 24 C 0.054 3.946 25 O -0.398 6.398 26 C 0.053 3.947 27 C -0.134 4.134 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.047 0.953 47 H 0.109 0.891 48 H 0.050 0.950 49 H 0.087 0.913 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.783 -10.121 -11.876 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.836 5.836 4 C 0.136 3.864 5 C -0.578 4.578 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.203 1.203 13 S 2.812 3.188 14 O -0.994 6.994 15 O -0.986 6.986 16 N -0.857 5.857 17 C -0.004 4.004 18 C -0.064 4.064 19 C -0.142 4.142 20 C 0.044 3.956 21 H 0.098 0.902 22 C -0.252 4.252 23 C -0.176 4.176 24 C -0.022 4.022 25 O -0.317 6.317 26 C -0.024 4.024 27 C -0.172 4.172 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.125 0.875 46 H 0.065 0.935 47 H 0.127 0.873 48 H 0.068 0.932 49 H 0.106 0.894 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.287 -9.594 -12.365 20.531 hybrid contribution -1.397 0.754 1.007 1.880 sum 11.890 -8.840 -11.359 18.669 Atomic orbital electron populations 1.22232 0.96766 1.02532 1.01416 1.21223 0.94624 0.81182 1.02840 1.57726 1.78829 1.23917 1.23170 1.18984 0.96328 0.91096 0.79985 1.21850 0.97370 1.32103 1.06518 0.93233 1.25596 0.99723 0.96606 0.96401 1.69988 1.30590 1.41609 1.13918 0.85750 0.80603 0.78424 0.78110 1.19324 1.20483 1.20330 1.01090 0.72529 0.72592 0.72563 1.93486 1.71188 1.76586 1.58172 1.93540 1.86214 1.32850 1.86024 1.59190 1.22658 1.35492 1.68366 1.22007 0.94846 0.87771 0.95752 1.21048 0.92243 0.96917 0.96204 1.22906 0.96969 0.96283 0.98008 1.21824 0.85702 0.93159 0.94897 0.90188 1.22628 1.03814 1.02139 0.96620 1.22095 1.02895 0.98952 0.93706 1.22748 0.97347 0.83927 0.98183 1.87894 1.62628 1.34106 1.47079 1.22798 0.99153 0.95869 0.84537 1.22071 1.02376 0.93639 0.99071 0.92901 0.94590 0.89452 0.89883 0.89630 0.93686 0.96017 0.92599 0.90980 0.91704 0.89825 0.87635 0.92004 0.88749 0.92848 0.90823 0.89216 0.87548 0.93502 0.87260 0.93176 0.89436 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.02 9.83 71.98 0.71 -5.31 16 2 C 0.13 4.33 6.09 86.38 0.53 4.85 16 3 N -1.00 -41.25 2.86 -519.85 -1.48 -42.74 16 4 C 0.26 12.81 4.56 85.64 0.39 13.20 16 5 C -0.54 -30.15 8.41 25.60 0.22 -29.94 16 6 H 0.05 2.82 6.89 -2.91 -0.02 2.80 16 7 C 0.02 0.90 5.46 84.66 0.46 1.37 16 8 N -0.92 -53.04 13.29 21.45 0.28 -52.76 16 9 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 S 2.80 114.84 5.70 -56.49 -0.32 114.51 16 14 O -1.01 -43.15 16.69 -128.00 -2.14 -45.29 16 15 O -1.00 -49.38 14.71 -128.00 -1.88 -51.26 16 16 N -1.02 -30.90 3.65 -484.46 -1.77 -32.66 16 17 C 0.12 2.82 5.29 86.46 0.46 3.28 16 18 C -0.06 -1.08 0.53 -51.92 -0.03 -1.10 16 19 C -0.10 -1.86 5.42 31.87 0.17 -1.69 16 20 C 0.15 3.96 3.39 45.58 0.15 4.11 16 21 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 22 C -0.19 -6.28 7.53 71.98 0.54 -5.74 16 23 C -0.14 -2.16 4.74 30.45 0.14 -2.02 16 24 C 0.05 0.88 6.66 72.06 0.48 1.36 16 25 O -0.40 -7.23 10.75 -148.98 -1.60 -8.83 16 26 C 0.05 0.76 6.67 72.06 0.48 1.24 16 27 C -0.13 -1.82 4.78 30.46 0.15 -1.68 16 28 H 0.05 2.13 6.59 -2.39 -0.02 2.11 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.39 7.61 -2.39 -0.02 2.38 16 32 H 0.09 2.65 8.00 -2.38 -0.02 2.63 16 33 H 0.05 2.32 3.84 -2.38 -0.01 2.31 16 34 H 0.02 1.10 8.00 -2.39 -0.02 1.08 16 35 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 36 H 0.07 1.54 7.71 -2.39 -0.02 1.52 16 37 H 0.06 1.54 6.33 -2.39 -0.02 1.53 16 38 H 0.08 1.52 7.94 -2.39 -0.02 1.50 16 39 H 0.11 1.43 8.00 -2.39 -0.02 1.41 16 40 H 0.06 2.10 6.89 -2.39 -0.02 2.08 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.05 2.22 4.77 -2.39 -0.01 2.21 16 43 H 0.07 1.23 7.64 -2.38 -0.02 1.21 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.05 0.81 6.69 -2.39 -0.02 0.79 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 48 H 0.05 0.74 7.65 -2.39 -0.02 0.72 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.09 1.08 8.01 -2.39 -0.02 1.07 16 Total: -1.00 -71.29 383.57 -1.11 -72.40 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.92 Total: 17.86 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.85 Total: -18.07 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -2.97 Total: -128.16 kcal Atomic # 8 Polarization: -99.76 SS G_CDS: -5.62 Total: -105.38 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 114.84 SS G_CDS: -0.32 Total: 114.51 kcal Total: -71.29 -1.11 -72.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592101168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.669 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds