Wall clock time and date at job start Sat Apr 11 2020 07:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21247 * 120.00179 * 2 1 4 4 C 1.47187 * 119.99763 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14576 * 359.97438 * 4 2 1 6 6 C 1.37896 * 119.93754 * 180.02562 * 5 4 2 7 7 C 1.38330 * 120.23483 * 359.73945 * 6 5 4 8 8 C 1.38854 * 120.29207 * 0.52135 * 7 6 5 9 9 O 1.35919 * 119.97162 * 179.76221 * 8 7 6 10 10 C 1.42901 * 116.99565 * 359.71695 * 9 8 7 11 11 C 1.50701 * 109.46669 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00329 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99478 * 179.72537 * 11 10 9 14 14 C 1.46497 * 119.99618 * 180.27668 * 13 11 10 15 15 C 1.53040 * 109.46243 * 275.02825 * 14 13 11 16 16 C 1.53193 * 109.31372 * 178.60173 * 15 14 13 17 17 N 1.46927 * 108.76579 * 54.65635 * 16 15 14 18 18 C 1.36934 * 120.62970 * 126.40312 * 17 16 15 19 19 H 1.07999 * 120.00717 * 331.83129 * 18 17 16 20 20 C 1.38819 * 119.99611 * 151.82815 * 18 17 16 21 21 N 1.31610 * 120.00154 * 343.06512 * 20 18 17 22 22 Si 1.86802 * 119.99698 * 163.07306 * 20 18 17 23 23 H 1.48504 * 109.47172 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47352 * 119.99909 * 22 20 18 25 25 H 1.48509 * 109.46835 * 239.99858 * 22 20 18 26 26 C 1.46924 * 118.73609 * 306.38427 * 17 16 15 27 27 C 1.53040 * 109.46088 * 154.97291 * 14 13 11 28 28 C 1.38426 * 120.05977 * 359.47935 * 8 7 6 29 29 H 1.09000 * 109.47475 * 270.00681 * 1 2 3 30 30 H 1.09002 * 109.46939 * 30.00656 * 1 2 3 31 31 H 1.08999 * 109.47339 * 149.99932 * 1 2 3 32 32 H 1.08003 * 120.03421 * 359.97438 * 5 4 2 33 33 H 1.07996 * 119.87894 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.85614 * 180.27762 * 7 6 5 35 35 H 1.09002 * 109.47046 * 60.00544 * 10 9 8 36 36 H 1.08991 * 109.47547 * 300.00397 * 10 9 8 37 37 H 0.97000 * 120.00389 * 0.28133 * 13 11 10 38 38 H 1.09001 * 109.46293 * 34.99872 * 14 13 11 39 39 H 1.09003 * 109.49756 * 298.56677 * 15 14 13 40 40 H 1.09004 * 109.49806 * 58.66303 * 15 14 13 41 41 H 1.08998 * 109.59803 * 294.86742 * 16 15 14 42 42 H 1.09007 * 109.70111 * 174.50574 * 16 15 14 43 43 H 0.97003 * 120.00144 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.58673 * 293.81912 * 26 17 16 45 45 H 1.09000 * 109.70299 * 173.46584 * 26 17 16 46 46 H 1.08997 * 109.49696 * 301.34159 * 27 14 13 47 47 H 1.09001 * 109.49902 * 61.40161 * 27 14 13 48 48 H 1.08001 * 120.11959 * 180.23933 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2403 -3.6795 0.0027 7 6 3.6236 -3.6802 -0.0027 8 6 4.3246 -2.4816 0.0016 9 8 5.6838 -2.4900 0.0011 10 6 6.3247 -3.7672 0.0023 11 6 7.8199 -3.5789 0.0022 12 8 8.2903 -2.4611 0.0016 13 7 8.6342 -4.6528 0.0088 14 6 10.0877 -4.4698 0.0148 15 6 10.5842 -4.2846 -1.4209 16 6 12.0994 -4.0586 -1.4079 17 7 12.7367 -5.1696 -0.6878 18 6 13.7455 -5.8903 -1.2692 19 1 13.7905 -5.9867 -2.3439 20 6 14.7107 -6.4969 -0.4769 21 7 14.8645 -6.1226 0.7754 22 14 15.7912 -7.8443 -1.1886 23 1 15.4206 -8.0784 -2.6075 24 1 17.2151 -7.4302 -1.1102 25 1 15.5963 -9.0961 -0.4136 26 6 12.2713 -5.4921 0.6679 27 6 10.7542 -5.7016 0.6316 28 6 3.6405 -1.2782 0.0005 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 0.4665 -2.4911 0.0025 33 1 1.7017 -4.6156 0.0031 34 1 4.1608 -4.6171 -0.0064 35 1 6.0281 -4.3234 -0.8870 36 1 6.0287 -4.3214 0.8929 37 1 8.2580 -5.5469 0.0095 38 1 10.3402 -3.5875 0.6030 39 1 10.3542 -5.1768 -2.0034 40 1 10.0917 -3.4209 -1.8677 41 1 12.3246 -3.1191 -0.9033 42 1 12.4744 -4.0231 -2.4307 43 1 15.5387 -6.5468 1.3291 44 1 12.5105 -4.6695 1.3418 45 1 12.7577 -6.4032 1.0164 46 1 10.3826 -5.8467 1.6459 47 1 10.5221 -6.5805 0.0300 48 1 4.1848 -0.3454 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593092169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:14 Heat of formation + Delta-G solvation = -61.180821 kcal Electronic energy + Delta-G solvation = -28993.547371 eV Core-core repulsion = 24821.640408 eV Total energy + Delta-G solvation = -4171.906963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.90071 -39.99130 -39.24265 -37.64848 -37.05812 -34.50769 -32.32587 -32.16163 -31.48130 -30.33208 -29.78252 -29.37277 -28.13802 -25.04059 -24.15923 -22.86261 -22.37354 -22.03932 -20.61673 -20.20231 -19.35758 -18.45615 -17.47641 -16.79493 -16.68234 -16.61840 -16.26047 -15.73412 -15.69495 -15.42116 -14.98821 -14.78691 -14.48659 -14.18419 -13.96741 -13.72997 -13.58482 -13.18027 -13.12598 -12.96627 -12.85901 -12.67304 -12.48745 -12.42834 -12.28936 -11.53559 -11.50837 -11.46548 -11.17317 -10.91085 -10.76543 -10.53037 -10.32192 -10.23479 -10.07945 -9.94029 -9.75999 -9.53599 -9.52744 -8.84024 -8.71052 -8.49975 -6.72025 -5.82778 -3.25145 0.16160 0.93924 1.95831 2.32428 2.55219 3.31316 3.34152 3.40520 3.42797 3.44911 3.71859 4.23664 4.39875 4.46160 4.46692 4.54520 4.60969 4.68185 4.70792 4.77751 4.91280 4.97023 5.12694 5.28453 5.36697 5.43225 5.44739 5.44960 5.52993 5.75656 5.80593 5.83295 5.85710 6.01858 6.13812 6.18612 6.25914 6.46367 6.50367 6.52374 6.75043 6.80625 6.92453 6.96003 7.07096 7.26777 7.49606 7.60751 7.77102 8.21368 8.41176 9.17467 9.80488 10.37469 11.26201 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.001590 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.960376 B =17604.900486 C =17956.130270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.394 3.606 3 O -0.451 6.451 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.091 4.091 7 C -0.181 4.181 8 C 0.122 3.878 9 O -0.285 6.285 10 C 0.039 3.961 11 C 0.511 3.489 12 O -0.516 6.516 13 N -0.719 5.719 14 C 0.152 3.848 15 C -0.140 4.140 16 C 0.147 3.853 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.174 3.826 27 C -0.146 4.146 28 C -0.091 4.091 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.145 1.825 -0.057 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.272 3.728 3 O -0.326 6.326 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.200 4.200 8 C 0.077 3.923 9 O -0.197 6.197 10 C -0.040 4.040 11 C 0.294 3.706 12 O -0.390 6.390 13 N -0.371 5.371 14 C 0.049 3.951 15 C -0.180 4.180 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.047 3.953 27 C -0.186 4.186 28 C -0.110 4.110 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.230 0.770 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -30.188 3.323 0.049 30.371 hybrid contribution 0.294 -1.628 -0.267 1.675 sum -29.894 1.695 -0.219 29.943 Atomic orbital electron populations 1.22230 0.93339 1.05086 1.04927 1.22521 0.91773 0.87399 0.71140 1.90576 1.72120 1.34265 1.35655 1.20312 0.93253 0.95194 1.04773 1.21363 1.00231 0.91255 1.00442 1.20928 0.93293 0.98400 0.98295 1.21564 0.95714 0.97240 1.05477 1.18950 0.82601 0.93986 0.96800 1.86224 1.15678 1.29532 1.88258 1.22588 0.92186 0.85457 1.03724 1.19911 0.87339 0.85676 0.77625 1.90774 1.76749 1.23854 1.47664 1.46212 1.07826 1.08116 1.74995 1.21112 0.76104 1.00120 0.97722 1.22388 0.99226 1.00861 0.95526 1.20880 0.89483 0.90965 0.96689 1.44099 1.39407 1.33472 1.14541 1.19238 1.02046 1.25293 0.91637 0.91562 1.25060 0.97004 1.00974 0.96605 1.70030 1.35197 1.42077 1.07422 0.86228 0.80169 0.81893 0.78505 1.20256 1.21695 1.21577 1.20745 0.86883 1.01245 0.86394 1.22547 1.00949 0.96076 0.99024 1.20698 0.92809 0.97279 1.00179 0.88284 0.89248 0.89358 0.84711 0.84896 0.84790 0.88937 0.88945 0.76974 0.89825 0.92236 0.92664 0.96102 0.92455 0.93625 0.96044 0.88952 0.92660 0.92080 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.79 9.75 36.01 0.35 -0.44 16 2 C 0.39 3.30 7.23 -30.68 -0.22 3.07 16 3 O -0.45 -5.59 17.09 5.59 0.10 -5.50 16 4 C -0.13 -1.13 5.87 -105.08 -0.62 -1.75 16 5 C -0.11 -0.66 9.36 -39.10 -0.37 -1.02 16 6 C -0.09 -0.51 10.02 -39.67 -0.40 -0.91 16 7 C -0.18 -1.31 9.04 -39.32 -0.36 -1.67 16 8 C 0.12 1.27 6.68 -39.28 -0.26 1.00 16 9 O -0.28 -3.59 9.67 -39.40 -0.38 -3.97 16 10 C 0.04 0.38 5.22 36.01 0.19 0.56 16 11 C 0.51 7.10 7.87 -10.98 -0.09 7.01 16 12 O -0.52 -9.82 16.16 -14.35 -0.23 -10.05 16 13 N -0.72 -9.17 5.08 -53.77 -0.27 -9.44 16 14 C 0.15 2.54 2.42 -67.89 -0.16 2.38 16 15 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 16 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 17 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 18 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 22 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 27 C -0.15 -2.54 5.55 -26.61 -0.15 -2.69 16 28 C -0.09 -0.98 9.54 -38.94 -0.37 -1.35 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.16 6.47 -51.93 -0.34 -0.18 16 32 H 0.14 0.35 6.35 -52.48 -0.33 0.01 16 33 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.13 0.66 6.27 -52.49 -0.33 0.33 16 35 H 0.09 0.62 7.64 -51.93 -0.40 0.23 16 36 H 0.09 0.61 7.67 -51.93 -0.40 0.22 16 37 H 0.40 3.65 8.60 -40.82 -0.35 3.30 16 38 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.19 7.93 -51.92 -0.41 0.78 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.36 6.07 -51.93 -0.31 2.04 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.14 1.73 7.65 -52.49 -0.40 1.33 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -35.27 395.21 -9.65 -44.92 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.02 Total: 0.41 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.87 Total: 1.65 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.17 Total: -49.67 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.52 Total: -19.52 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.27 -9.65 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593092169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.261 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds