Wall clock time and date at job start Sat Apr 11 2020 07:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21247 * 120.00179 * 2 1 4 4 C 1.47187 * 119.99763 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14576 * 359.97438 * 4 2 1 6 6 C 1.37896 * 119.93754 * 180.02562 * 5 4 2 7 7 C 1.38330 * 120.23483 * 359.73945 * 6 5 4 8 8 C 1.38854 * 120.29207 * 0.52135 * 7 6 5 9 9 O 1.35919 * 119.97162 * 179.76221 * 8 7 6 10 10 C 1.42901 * 116.99565 * 359.71695 * 9 8 7 11 11 C 1.50701 * 109.46669 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00329 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99478 * 179.72537 * 11 10 9 14 14 C 1.46497 * 119.99618 * 180.27668 * 13 11 10 15 15 C 1.53040 * 109.46243 * 275.02825 * 14 13 11 16 16 C 1.53193 * 109.31372 * 178.60173 * 15 14 13 17 17 N 1.46927 * 108.76579 * 54.65635 * 16 15 14 18 18 C 1.36934 * 120.62970 * 126.40312 * 17 16 15 19 19 H 1.07999 * 120.00717 * 331.83129 * 18 17 16 20 20 C 1.38819 * 119.99611 * 151.82815 * 18 17 16 21 21 N 1.31610 * 120.00154 * 343.06512 * 20 18 17 22 22 Si 1.86802 * 119.99698 * 163.07306 * 20 18 17 23 23 H 1.48504 * 109.47172 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47352 * 119.99909 * 22 20 18 25 25 H 1.48509 * 109.46835 * 239.99858 * 22 20 18 26 26 C 1.46924 * 118.73609 * 306.38427 * 17 16 15 27 27 C 1.53040 * 109.46088 * 154.97291 * 14 13 11 28 28 C 1.38426 * 120.05977 * 359.47935 * 8 7 6 29 29 H 1.09000 * 109.47475 * 270.00681 * 1 2 3 30 30 H 1.09002 * 109.46939 * 30.00656 * 1 2 3 31 31 H 1.08999 * 109.47339 * 149.99932 * 1 2 3 32 32 H 1.08003 * 120.03421 * 359.97438 * 5 4 2 33 33 H 1.07996 * 119.87894 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.85614 * 180.27762 * 7 6 5 35 35 H 1.09002 * 109.47046 * 60.00544 * 10 9 8 36 36 H 1.08991 * 109.47547 * 300.00397 * 10 9 8 37 37 H 0.97000 * 120.00389 * 0.28133 * 13 11 10 38 38 H 1.09001 * 109.46293 * 34.99872 * 14 13 11 39 39 H 1.09003 * 109.49756 * 298.56677 * 15 14 13 40 40 H 1.09004 * 109.49806 * 58.66303 * 15 14 13 41 41 H 1.08998 * 109.59803 * 294.86742 * 16 15 14 42 42 H 1.09007 * 109.70111 * 174.50574 * 16 15 14 43 43 H 0.97003 * 120.00144 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.58673 * 293.81912 * 26 17 16 45 45 H 1.09000 * 109.70299 * 173.46584 * 26 17 16 46 46 H 1.08997 * 109.49696 * 301.34159 * 27 14 13 47 47 H 1.09001 * 109.49902 * 61.40161 * 27 14 13 48 48 H 1.08001 * 120.11959 * 180.23933 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2403 -3.6795 0.0027 7 6 3.6236 -3.6802 -0.0027 8 6 4.3246 -2.4816 0.0016 9 8 5.6838 -2.4900 0.0011 10 6 6.3247 -3.7672 0.0023 11 6 7.8199 -3.5789 0.0022 12 8 8.2903 -2.4611 0.0016 13 7 8.6342 -4.6528 0.0088 14 6 10.0877 -4.4698 0.0148 15 6 10.5842 -4.2846 -1.4209 16 6 12.0994 -4.0586 -1.4079 17 7 12.7367 -5.1696 -0.6878 18 6 13.7455 -5.8903 -1.2692 19 1 13.7905 -5.9867 -2.3439 20 6 14.7107 -6.4969 -0.4769 21 7 14.8645 -6.1226 0.7754 22 14 15.7912 -7.8443 -1.1886 23 1 15.4206 -8.0784 -2.6075 24 1 17.2151 -7.4302 -1.1102 25 1 15.5963 -9.0961 -0.4136 26 6 12.2713 -5.4921 0.6679 27 6 10.7542 -5.7016 0.6316 28 6 3.6405 -1.2782 0.0005 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 0.4665 -2.4911 0.0025 33 1 1.7017 -4.6156 0.0031 34 1 4.1608 -4.6171 -0.0064 35 1 6.0281 -4.3234 -0.8870 36 1 6.0287 -4.3214 0.8929 37 1 8.2580 -5.5469 0.0095 38 1 10.3402 -3.5875 0.6030 39 1 10.3542 -5.1768 -2.0034 40 1 10.0917 -3.4209 -1.8677 41 1 12.3246 -3.1191 -0.9033 42 1 12.4744 -4.0231 -2.4307 43 1 15.5387 -6.5468 1.3291 44 1 12.5105 -4.6695 1.3418 45 1 12.7577 -6.4032 1.0164 46 1 10.3826 -5.8467 1.6459 47 1 10.5221 -6.5805 0.0300 48 1 4.1848 -0.3454 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593092169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:13 Heat of formation + Delta-G solvation = -84.470638 kcal Electronic energy + Delta-G solvation = -28994.557294 eV Core-core repulsion = 24821.640408 eV Total energy + Delta-G solvation = -4172.916885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.63434 -40.95430 -40.13614 -38.96844 -37.98362 -36.05086 -34.03237 -32.72044 -32.26393 -31.80480 -31.33267 -29.97230 -29.09385 -26.79176 -24.87266 -23.99778 -23.64171 -23.39572 -21.70205 -21.16050 -20.75693 -19.15684 -18.92063 -18.07371 -17.55965 -17.41828 -16.98314 -16.87736 -16.63002 -16.39828 -16.06975 -15.79989 -15.65836 -15.43226 -15.33599 -14.91028 -14.69932 -14.66166 -14.34206 -14.12288 -13.89056 -13.51865 -13.23939 -13.22100 -13.03959 -13.02778 -12.71642 -12.63835 -12.54422 -12.25087 -12.11960 -12.09265 -12.00766 -11.89393 -11.58482 -11.38753 -10.92715 -10.86373 -10.58045 -10.10484 -10.09046 -9.32531 -8.72571 -7.89023 -5.35085 -0.42295 0.37917 1.38185 1.46366 1.48714 1.49096 1.49737 1.60276 2.51256 2.55730 2.76105 3.13680 3.27115 3.51882 3.65100 3.78052 3.87587 3.96998 3.97683 4.00290 4.09400 4.12026 4.21240 4.29886 4.33093 4.44053 4.44613 4.62303 4.68404 4.75092 4.78712 4.83274 4.87949 4.99245 5.02597 5.09737 5.13123 5.24480 5.26951 5.29910 5.38700 5.45124 5.46694 5.63778 5.66668 5.70393 6.25751 6.37655 6.49441 6.53837 7.13322 7.19156 7.82304 8.35431 9.18246 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.001590 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.960376 B =17604.900486 C =17956.130270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.390 3.610 3 O -0.510 6.510 4 C -0.151 4.151 5 C -0.097 4.097 6 C -0.085 4.085 7 C -0.173 4.173 8 C 0.098 3.902 9 O -0.326 6.326 10 C 0.045 3.955 11 C 0.507 3.493 12 O -0.577 6.577 13 N -0.701 5.701 14 C 0.162 3.838 15 C -0.124 4.124 16 C 0.143 3.857 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.286 1.286 26 C 0.177 3.823 27 C -0.127 4.127 28 C -0.128 4.128 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.420 0.580 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.003 0.997 42 H 0.058 0.942 43 H 0.251 0.749 44 H -0.009 1.009 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.328 -1.827 -0.757 35.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.272 3.728 3 O -0.389 6.389 4 C -0.152 4.152 5 C -0.114 4.114 6 C -0.103 4.103 7 C -0.192 4.192 8 C 0.054 3.946 9 O -0.240 6.240 10 C -0.032 4.032 11 C 0.294 3.706 12 O -0.456 6.456 13 N -0.354 5.354 14 C 0.058 3.942 15 C -0.164 4.164 16 C 0.017 3.983 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.223 1.223 25 H -0.213 1.213 26 C 0.050 3.950 27 C -0.166 4.166 28 C -0.148 4.148 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.194 0.806 33 H 0.192 0.808 34 H 0.182 0.818 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.258 0.742 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.010 0.990 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -34.439 -0.383 -0.665 34.447 hybrid contribution 1.557 -0.451 -0.047 1.622 sum -32.882 -0.834 -0.712 32.900 Atomic orbital electron populations 1.22282 0.89310 1.06626 1.06547 1.23341 0.93942 0.86593 0.68919 1.90558 1.73606 1.36052 1.38706 1.20515 0.92328 0.96711 1.05626 1.21850 1.02185 0.89901 0.97512 1.21479 0.92742 0.99902 0.96140 1.21940 0.96711 0.96790 1.03723 1.19093 0.81802 0.94998 0.98746 1.86154 1.17295 1.31430 1.89135 1.22698 0.88262 0.85101 1.07177 1.20756 0.89440 0.84612 0.75806 1.90758 1.78162 1.26319 1.50364 1.45820 1.05879 1.09391 1.74327 1.20667 0.78667 0.98562 0.96346 1.22173 0.96263 1.01432 0.96562 1.20968 0.91892 0.89408 0.96064 1.44351 1.39504 1.34244 1.15057 1.19564 1.02596 1.25299 0.91936 0.91433 1.25825 0.98512 1.03117 0.96986 1.70191 1.36003 1.43305 1.08707 0.85181 0.77807 0.78965 0.78297 1.19020 1.22280 1.21277 1.20585 0.90541 0.98657 0.85172 1.22249 0.96632 0.96724 1.00995 1.20678 0.94330 0.96564 1.03183 0.86285 0.89343 0.86174 0.80631 0.80779 0.81809 0.85223 0.85202 0.74192 0.92835 0.90852 0.92558 0.97899 0.92371 0.94000 0.99044 0.91674 0.90178 0.90495 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 9.75 71.24 0.69 -0.34 16 2 C 0.39 6.60 7.23 28.04 0.20 6.80 16 3 O -0.51 -13.96 17.09 -2.93 -0.05 -14.01 16 4 C -0.15 -2.45 5.87 -20.16 -0.12 -2.57 16 5 C -0.10 -0.71 9.36 22.58 0.21 -0.50 16 6 C -0.09 -0.52 10.02 22.21 0.22 -0.29 16 7 C -0.17 -1.84 9.04 22.44 0.20 -1.64 16 8 C 0.10 1.99 6.68 22.46 0.15 2.14 16 9 O -0.33 -8.27 9.67 -73.60 -0.71 -8.98 16 10 C 0.05 0.74 5.22 71.24 0.37 1.12 16 11 C 0.51 13.55 7.87 87.66 0.69 14.24 16 12 O -0.58 -22.73 16.16 16.01 0.26 -22.48 16 13 N -0.70 -16.26 5.08 -442.41 -2.25 -18.50 16 14 C 0.16 5.32 2.42 45.02 0.11 5.43 16 15 C -0.12 -4.37 5.65 30.67 0.17 -4.20 16 16 C 0.14 6.24 6.52 86.36 0.56 6.80 16 17 N -0.61 -30.50 2.99 -699.09 -2.09 -32.59 16 18 C -0.26 -14.39 9.58 84.04 0.81 -13.58 16 19 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 20 C -0.05 -2.70 4.92 84.87 0.42 -2.28 16 21 N -0.94 -54.93 11.19 21.65 0.24 -54.69 16 22 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 26 C 0.18 8.31 5.30 86.36 0.46 8.77 16 27 C -0.13 -4.25 5.55 30.67 0.17 -4.08 16 28 C -0.13 -2.99 9.54 22.68 0.22 -2.77 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 -0.13 6.47 -2.39 -0.02 -0.15 16 32 H 0.18 -0.20 6.35 -2.91 -0.02 -0.22 16 33 H 0.17 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.16 0.66 6.27 -2.91 -0.02 0.64 16 35 H 0.13 1.16 7.64 -2.39 -0.02 1.15 16 36 H 0.13 1.15 7.67 -2.39 -0.02 1.14 16 37 H 0.42 5.97 8.60 -92.71 -0.80 5.17 16 38 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.06 2.47 7.93 -2.38 -0.02 2.45 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 44 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 45 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 46 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.11 3.10 7.65 -2.91 -0.02 3.07 16 Total: -1.00 -86.17 395.21 3.16 -83.01 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.19 Total: 9.11 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.54 Total: 13.03 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.10 Total: -105.78 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.50 Total: -45.47 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -86.17 3.16 -83.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593092169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.458 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds