Wall clock time and date at job start Sat Apr 11 2020 07:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47483 * 2 1 4 4 C 1.42897 * 114.00232 * 179.97438 * 3 2 1 5 5 C 1.53039 * 109.46065 * 270.02918 * 4 3 2 6 6 C 1.53193 * 109.31376 * 178.60205 * 5 4 3 7 7 N 1.46928 * 108.76392 * 54.65503 * 6 5 4 8 8 C 1.34774 * 120.63097 * 126.36865 * 7 6 5 9 9 O 1.21357 * 119.99581 * 351.30345 * 8 7 6 10 10 C 1.49348 * 119.99966 * 171.31162 * 8 7 6 11 11 O 1.21379 * 120.00341 * 353.35826 * 10 8 7 12 12 N 1.34778 * 119.99938 * 173.35555 * 10 8 7 13 13 C 1.39743 * 119.99892 * 183.59932 * 12 10 8 14 14 C 1.39339 * 119.95786 * 324.01139 * 13 12 10 15 15 C 1.38468 * 120.42634 * 179.72121 * 14 13 12 16 16 C 1.37701 * 120.32740 * 0.54957 * 15 14 13 17 17 C 1.40747 * 119.89390 * 359.72441 * 16 15 14 18 18 C 1.41412 * 120.20680 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99802 * 31.40218 * 18 17 16 20 20 C 1.39934 * 120.00255 * 211.39387 * 18 17 16 21 21 N 1.30832 * 119.99513 * 7.64548 * 20 18 17 22 22 Si 1.86795 * 120.00283 * 187.64054 * 20 18 17 23 23 H 1.48498 * 109.46945 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47078 * 120.00230 * 22 20 18 25 25 H 1.48498 * 109.47306 * 240.00431 * 22 20 18 26 26 C 1.38306 * 119.94903 * 144.27816 * 13 12 10 27 27 C 1.46923 * 118.73753 * 306.38086 * 7 6 5 28 28 C 1.53037 * 109.45968 * 149.97333 * 4 3 2 29 29 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46865 * 59.99877 * 1 2 3 31 31 H 1.08999 * 109.46829 * 300.00524 * 1 2 3 32 32 H 1.08999 * 109.46865 * 120.00122 * 2 1 3 33 33 H 1.09000 * 109.46914 * 240.00022 * 2 1 3 34 34 H 1.08996 * 109.45751 * 30.00336 * 4 3 2 35 35 H 1.08998 * 109.49776 * 298.56666 * 5 4 3 36 36 H 1.08996 * 109.49973 * 58.65797 * 5 4 3 37 37 H 1.08998 * 109.59435 * 294.86950 * 6 5 4 38 38 H 1.09000 * 109.70142 * 174.50434 * 6 5 4 39 39 H 0.97003 * 120.00212 * 3.60511 * 12 10 8 40 40 H 1.08005 * 119.78398 * 359.97297 * 14 13 12 41 41 H 1.08002 * 119.83978 * 180.25075 * 15 14 13 42 42 H 1.07996 * 120.05594 * 179.74976 * 16 15 14 43 43 H 0.96999 * 119.99856 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.16535 * 359.97438 * 26 13 12 45 45 H 1.08998 * 109.59171 * 293.82941 * 27 7 6 46 46 H 1.09004 * 109.70533 * 173.46939 * 27 7 6 47 47 H 1.09001 * 109.50173 * 301.33871 * 28 4 3 48 48 H 1.09001 * 109.49823 * 61.43366 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9387 1.4998 1.4437 6 6 5.4682 1.5855 1.4406 7 7 5.8753 2.7386 0.6260 8 6 6.6969 3.6801 1.1307 9 8 6.9815 3.6678 2.3104 10 6 7.2569 4.7387 0.2384 11 8 7.0714 4.6830 -0.9599 12 7 7.9683 5.7559 0.7636 13 6 8.4282 6.7859 -0.0612 14 6 8.8477 6.5030 -1.3595 15 6 9.2997 7.5170 -2.1870 16 6 9.3503 8.8156 -1.7316 17 6 8.9353 9.1159 -0.4207 18 6 8.9840 10.4472 0.0536 19 1 8.8368 11.2698 -0.6305 20 6 9.2227 10.6987 1.4093 21 7 9.5485 9.7162 2.2094 22 14 9.0762 12.4373 2.0766 23 1 8.6977 13.3596 0.9761 24 1 8.0345 12.4754 3.1342 25 1 10.3795 12.8588 2.6501 26 6 8.4716 8.0840 0.4142 27 6 5.3693 2.8458 -0.7492 28 6 3.8409 2.7456 -0.7215 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8634 0.6014 -0.5130 35 1 3.5263 2.3722 1.9506 36 1 3.6263 0.5946 1.9644 37 1 5.8846 0.6724 1.0152 38 1 5.8313 1.7123 2.4605 39 1 8.1611 5.7729 1.7141 40 1 8.8161 5.4868 -1.7240 41 1 9.6188 7.2876 -3.1930 42 1 9.7075 9.6024 -2.3794 43 1 9.7135 9.8904 3.1492 44 1 8.1504 8.3040 1.4216 45 1 5.7776 2.0354 -1.3531 46 1 5.6650 3.8042 -1.1760 47 1 3.4589 2.7272 -1.7422 48 1 3.4294 3.6062 -0.1941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593664870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:18 Heat of formation + Delta-G solvation = -83.166326 kcal Electronic energy + Delta-G solvation = -30016.334772 eV Core-core repulsion = 25843.474446 eV Total energy + Delta-G solvation = -4172.860326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.97745 -39.41635 -38.49356 -37.26684 -36.75227 -34.48497 -33.31979 -32.67903 -31.45170 -30.71253 -29.61409 -28.77699 -25.96351 -25.28444 -24.14242 -23.26748 -22.93931 -21.45572 -21.17110 -20.20071 -19.51815 -17.76651 -17.50551 -17.25095 -16.69049 -16.10972 -15.85448 -15.65883 -15.31192 -14.92234 -14.77593 -14.71950 -14.32972 -14.28672 -14.14794 -13.58899 -13.26222 -13.03243 -12.88844 -12.82814 -12.53355 -12.41776 -12.29888 -12.16304 -11.74180 -11.71503 -11.50071 -11.24744 -11.19899 -11.14516 -11.08370 -10.84394 -10.72665 -10.58358 -9.97749 -9.82156 -9.78905 -9.46454 -9.22158 -8.93729 -8.77542 -7.38788 -7.13837 -6.68674 -4.43401 1.47546 2.38793 2.71999 2.85560 3.08285 3.13186 3.16948 3.27090 3.49201 3.67429 3.94355 4.40685 4.50271 4.57289 4.65380 4.70721 4.75731 4.78893 4.91607 4.99537 5.02728 5.08927 5.25082 5.39246 5.47931 5.50623 5.55811 5.56880 5.64009 5.75346 5.84521 5.87017 6.02254 6.18043 6.23579 6.54085 6.58774 6.75673 6.89066 6.94341 7.01222 7.02788 7.21747 7.45323 7.48776 7.73695 7.83667 7.96790 8.03844 8.20986 8.35682 8.59835 8.85030 8.88486 10.23190 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.002161 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.433161 B =12954.807567 C =13297.205702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.090 3.910 5 C -0.154 4.154 6 C 0.111 3.889 7 N -0.587 5.587 8 C 0.513 3.487 9 O -0.521 6.521 10 C 0.500 3.500 11 O -0.502 6.502 12 N -0.623 5.623 13 C 0.129 3.871 14 C -0.217 4.217 15 C -0.091 4.091 16 C -0.216 4.216 17 C 0.118 3.882 18 C -0.464 4.464 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.808 5.808 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.163 4.163 27 C 0.072 3.928 28 C -0.131 4.131 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.415 0.585 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.279 0.721 44 H 0.126 0.874 45 H 0.069 0.931 46 H 0.151 0.849 47 H 0.084 0.916 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 -17.986 -1.381 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.301 6.301 4 C 0.032 3.968 5 C -0.193 4.193 6 C -0.011 4.011 7 N -0.321 5.321 8 C 0.296 3.704 9 O -0.397 6.397 10 C 0.282 3.718 11 O -0.380 6.380 12 N -0.267 5.267 13 C 0.037 3.963 14 C -0.238 4.238 15 C -0.110 4.110 16 C -0.236 4.236 17 C 0.115 3.885 18 C -0.495 4.495 19 H 0.097 0.903 20 C -0.143 4.143 21 N -0.435 5.435 22 Si 0.737 3.263 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.184 4.184 27 C -0.049 4.049 28 C -0.170 4.170 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.252 0.748 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.144 0.856 45 H 0.088 0.912 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.762 -17.924 -1.314 21.479 hybrid contribution 0.184 0.305 0.967 1.031 sum -11.578 -17.619 -0.346 21.085 Atomic orbital electron populations 1.21745 0.93789 1.02152 1.03213 1.22498 0.95598 0.84069 0.99896 1.87955 1.20927 1.26209 1.95034 1.22136 0.80991 0.98529 0.95132 1.22415 0.95359 1.03606 0.97907 1.21661 0.94068 0.87744 0.97661 1.47932 1.46152 1.22725 1.15336 1.20258 0.79800 0.82613 0.87726 1.90745 1.59227 1.73887 1.15836 1.19964 0.80389 0.83223 0.88239 1.90471 1.57319 1.75194 1.14969 1.43203 1.49967 1.20712 1.12832 1.17673 1.00598 0.86675 0.91324 1.20432 1.10558 0.98717 0.94110 1.20454 0.99801 0.93251 0.97491 1.21172 1.08990 0.95169 0.98221 1.17394 0.87667 0.93122 0.90341 1.19549 1.43848 0.92758 0.93327 0.90314 1.25866 0.92460 0.99135 0.96868 1.69761 1.34721 1.33104 1.05940 0.86198 0.78552 0.82205 0.79360 1.18530 1.19881 1.20035 1.21201 1.05713 0.89406 1.02080 1.22922 0.92088 1.08473 0.81448 1.22049 0.95902 0.97326 1.01682 0.91208 0.91816 0.91845 0.93525 0.93449 0.92028 0.90352 0.90551 0.91009 0.88334 0.74782 0.87470 0.88752 0.88600 0.91044 0.85624 0.91225 0.83198 0.89734 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.41 6.47 37.16 0.24 0.65 16 3 O -0.38 -3.88 9.99 -35.23 -0.35 -4.24 16 4 C 0.09 0.83 2.57 -26.69 -0.07 0.76 16 5 C -0.15 -1.41 5.69 -26.61 -0.15 -1.56 16 6 C 0.11 1.12 6.44 -3.71 -0.02 1.10 16 7 N -0.59 -7.49 2.97 -173.31 -0.52 -8.00 16 8 C 0.51 8.12 7.73 -11.63 -0.09 8.03 16 9 O -0.52 -9.10 15.92 5.49 0.09 -9.01 16 10 C 0.50 8.95 7.57 -11.63 -0.09 8.86 16 11 O -0.50 -9.38 10.69 5.47 0.06 -9.32 16 12 N -0.62 -12.18 5.32 -10.34 -0.05 -12.23 16 13 C 0.13 2.94 6.26 -83.82 -0.52 2.41 16 14 C -0.22 -4.91 8.69 -39.09 -0.34 -5.24 16 15 C -0.09 -2.03 10.02 -39.69 -0.40 -2.43 16 16 C -0.22 -5.17 9.79 -38.83 -0.38 -5.55 16 17 C 0.12 3.06 5.53 -106.85 -0.59 2.47 16 18 C -0.46 -12.05 9.06 -37.74 -0.34 -12.39 16 19 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 20 C 0.07 1.79 5.29 -17.34 -0.09 1.70 16 21 N -0.81 -20.47 10.86 55.55 0.60 -19.86 16 22 Si 0.91 18.60 29.57 -169.99 -5.03 13.57 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.16 -4.08 8.55 -38.66 -0.33 -4.41 16 27 C 0.07 0.83 5.98 -3.71 -0.02 0.81 16 28 C -0.13 -1.35 5.73 -26.61 -0.15 -1.50 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.30 7.84 -51.93 -0.41 -0.11 16 33 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.08 7.00 -51.93 -0.36 0.72 16 39 H 0.42 7.62 8.30 -40.82 -0.34 7.28 16 40 H 0.11 2.33 6.31 -52.48 -0.33 2.00 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 44 H 0.13 3.25 6.31 -52.49 -0.33 2.91 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.15 2.11 4.32 -54.77 -0.24 1.87 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -28.69 389.49 -9.32 -38.01 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.01 Total: 12.08 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.97 Total: -6.87 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.03 Total: -40.10 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.21 Total: -22.57 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.69 -9.32 -38.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593664870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.159 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds