Wall clock time and date at job start Sat Apr 11 2020 07:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47483 * 2 1 4 4 C 1.42897 * 114.00232 * 179.97438 * 3 2 1 5 5 C 1.53039 * 109.46065 * 270.02918 * 4 3 2 6 6 C 1.53193 * 109.31376 * 178.60205 * 5 4 3 7 7 N 1.46928 * 108.76392 * 54.65503 * 6 5 4 8 8 C 1.34774 * 120.63097 * 126.36865 * 7 6 5 9 9 O 1.21357 * 119.99581 * 351.30345 * 8 7 6 10 10 C 1.49348 * 119.99966 * 171.31162 * 8 7 6 11 11 O 1.21379 * 120.00341 * 353.35826 * 10 8 7 12 12 N 1.34778 * 119.99938 * 173.35555 * 10 8 7 13 13 C 1.39743 * 119.99892 * 183.59932 * 12 10 8 14 14 C 1.39339 * 119.95786 * 324.01139 * 13 12 10 15 15 C 1.38468 * 120.42634 * 179.72121 * 14 13 12 16 16 C 1.37701 * 120.32740 * 0.54957 * 15 14 13 17 17 C 1.40747 * 119.89390 * 359.72441 * 16 15 14 18 18 C 1.41412 * 120.20680 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99802 * 31.40218 * 18 17 16 20 20 C 1.39934 * 120.00255 * 211.39387 * 18 17 16 21 21 N 1.30832 * 119.99513 * 7.64548 * 20 18 17 22 22 Si 1.86795 * 120.00283 * 187.64054 * 20 18 17 23 23 H 1.48498 * 109.46945 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47078 * 120.00230 * 22 20 18 25 25 H 1.48498 * 109.47306 * 240.00431 * 22 20 18 26 26 C 1.38306 * 119.94903 * 144.27816 * 13 12 10 27 27 C 1.46923 * 118.73753 * 306.38086 * 7 6 5 28 28 C 1.53037 * 109.45968 * 149.97333 * 4 3 2 29 29 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46865 * 59.99877 * 1 2 3 31 31 H 1.08999 * 109.46829 * 300.00524 * 1 2 3 32 32 H 1.08999 * 109.46865 * 120.00122 * 2 1 3 33 33 H 1.09000 * 109.46914 * 240.00022 * 2 1 3 34 34 H 1.08996 * 109.45751 * 30.00336 * 4 3 2 35 35 H 1.08998 * 109.49776 * 298.56666 * 5 4 3 36 36 H 1.08996 * 109.49973 * 58.65797 * 5 4 3 37 37 H 1.08998 * 109.59435 * 294.86950 * 6 5 4 38 38 H 1.09000 * 109.70142 * 174.50434 * 6 5 4 39 39 H 0.97003 * 120.00212 * 3.60511 * 12 10 8 40 40 H 1.08005 * 119.78398 * 359.97297 * 14 13 12 41 41 H 1.08002 * 119.83978 * 180.25075 * 15 14 13 42 42 H 1.07996 * 120.05594 * 179.74976 * 16 15 14 43 43 H 0.96999 * 119.99856 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.16535 * 359.97438 * 26 13 12 45 45 H 1.08998 * 109.59171 * 293.82941 * 27 7 6 46 46 H 1.09004 * 109.70533 * 173.46939 * 27 7 6 47 47 H 1.09001 * 109.50173 * 301.33871 * 28 4 3 48 48 H 1.09001 * 109.49823 * 61.43366 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9387 1.4998 1.4437 6 6 5.4682 1.5855 1.4406 7 7 5.8753 2.7386 0.6260 8 6 6.6969 3.6801 1.1307 9 8 6.9815 3.6678 2.3104 10 6 7.2569 4.7387 0.2384 11 8 7.0714 4.6830 -0.9599 12 7 7.9683 5.7559 0.7636 13 6 8.4282 6.7859 -0.0612 14 6 8.8477 6.5030 -1.3595 15 6 9.2997 7.5170 -2.1870 16 6 9.3503 8.8156 -1.7316 17 6 8.9353 9.1159 -0.4207 18 6 8.9840 10.4472 0.0536 19 1 8.8368 11.2698 -0.6305 20 6 9.2227 10.6987 1.4093 21 7 9.5485 9.7162 2.2094 22 14 9.0762 12.4373 2.0766 23 1 8.6977 13.3596 0.9761 24 1 8.0345 12.4754 3.1342 25 1 10.3795 12.8588 2.6501 26 6 8.4716 8.0840 0.4142 27 6 5.3693 2.8458 -0.7492 28 6 3.8409 2.7456 -0.7215 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8634 0.6014 -0.5130 35 1 3.5263 2.3722 1.9506 36 1 3.6263 0.5946 1.9644 37 1 5.8846 0.6724 1.0152 38 1 5.8313 1.7123 2.4605 39 1 8.1611 5.7729 1.7141 40 1 8.8161 5.4868 -1.7240 41 1 9.6188 7.2876 -3.1930 42 1 9.7075 9.6024 -2.3794 43 1 9.7135 9.8904 3.1492 44 1 8.1504 8.3040 1.4216 45 1 5.7776 2.0354 -1.3531 46 1 5.6650 3.8042 -1.1760 47 1 3.4589 2.7272 -1.7422 48 1 3.4294 3.6062 -0.1941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593664870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:17 Heat of formation + Delta-G solvation = -99.633970 kcal Electronic energy + Delta-G solvation = -30017.048862 eV Core-core repulsion = 25843.474446 eV Total energy + Delta-G solvation = -4173.574417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.27580 -40.61155 -39.58415 -38.92441 -37.75126 -36.10762 -35.10207 -33.52877 -32.30461 -31.49069 -31.39358 -30.50377 -27.31021 -26.99570 -25.09256 -24.33694 -23.52604 -23.14498 -22.52531 -21.59855 -20.80009 -19.32913 -18.96785 -18.23488 -17.76300 -17.48059 -17.19483 -16.78039 -16.51401 -16.46014 -16.28076 -15.62304 -15.61229 -15.46685 -15.04081 -14.89203 -14.61670 -14.42766 -14.19283 -14.04576 -13.75638 -13.53735 -13.29075 -13.07324 -12.94702 -12.85115 -12.81936 -12.74076 -12.56965 -12.32188 -12.22370 -12.07934 -11.81072 -11.78038 -11.62104 -11.54733 -11.19836 -10.99318 -10.52456 -10.14353 -9.97624 -9.27861 -8.93795 -8.52549 -6.38752 0.07838 0.92517 1.04840 1.21192 1.40666 1.50770 1.54782 2.02518 2.23409 2.36880 2.68771 2.78148 3.16953 3.66504 3.68056 3.76153 3.94758 4.04061 4.19604 4.23844 4.29964 4.37714 4.42301 4.46661 4.52013 4.63429 4.68257 4.72653 4.74314 4.84912 4.88776 4.92957 5.02375 5.07123 5.10018 5.13650 5.15032 5.18518 5.28339 5.30437 5.35652 5.71369 5.72391 5.89790 5.98503 6.08704 6.18920 6.31846 6.39451 6.60568 6.64217 6.86662 6.95009 6.99684 8.39866 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.002161 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.433161 B =12954.807567 C =13297.205702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.092 3.908 5 C -0.148 4.148 6 C 0.108 3.892 7 N -0.576 5.576 8 C 0.515 3.485 9 O -0.543 6.543 10 C 0.501 3.499 11 O -0.508 6.508 12 N -0.630 5.630 13 C 0.135 3.865 14 C -0.222 4.222 15 C -0.086 4.086 16 C -0.231 4.231 17 C 0.089 3.911 18 C -0.497 4.497 19 H 0.078 0.922 20 C 0.031 3.969 21 N -0.836 5.836 22 Si 0.984 3.016 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.186 4.186 27 C 0.073 3.927 28 C -0.127 4.127 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.419 0.581 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.285 0.715 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.096 0.904 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -19.993 -1.921 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.324 6.324 4 C 0.035 3.965 5 C -0.186 4.186 6 C -0.013 4.013 7 N -0.309 5.309 8 C 0.298 3.702 9 O -0.421 6.421 10 C 0.284 3.716 11 O -0.385 6.385 12 N -0.274 5.274 13 C 0.042 3.958 14 C -0.243 4.243 15 C -0.105 4.105 16 C -0.251 4.251 17 C 0.086 3.914 18 C -0.528 4.528 19 H 0.096 0.904 20 C -0.182 4.182 21 N -0.463 5.463 22 Si 0.805 3.195 23 H -0.182 1.182 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.207 4.207 27 C -0.047 4.047 28 C -0.165 4.165 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.256 0.744 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.143 0.857 47 H 0.114 0.886 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.523 -19.985 -1.881 23.660 hybrid contribution 0.323 0.757 1.049 1.333 sum -12.200 -19.228 -0.832 22.787 Atomic orbital electron populations 1.21774 0.93404 1.03260 1.02451 1.22715 0.96019 0.82952 1.01053 1.87937 1.21208 1.28124 1.95146 1.22111 0.81043 0.98435 0.94958 1.22362 0.94317 1.03765 0.98146 1.21919 0.94869 0.87437 0.97029 1.48077 1.44440 1.22338 1.16082 1.19806 0.80651 0.82747 0.87036 1.90742 1.60563 1.74464 1.16317 1.20405 0.79648 0.83067 0.88524 1.90489 1.57113 1.75470 1.15454 1.43184 1.50741 1.20742 1.12771 1.17719 0.99460 0.86772 0.91820 1.20667 1.10237 0.99360 0.94011 1.20808 0.98435 0.92376 0.98887 1.21364 1.09533 0.96395 0.97811 1.17778 0.88349 0.93711 0.91580 1.19798 1.45599 0.92947 0.94445 0.90414 1.26704 0.91567 1.03272 0.96650 1.69830 1.34954 1.35105 1.06446 0.85119 0.78742 0.77009 0.78590 1.18179 1.19270 1.19256 1.21101 1.07511 0.90526 1.01609 1.22874 0.93039 1.08007 0.80823 1.21979 0.94721 0.97474 1.02372 0.89181 0.92507 0.92685 0.92341 0.92200 0.89719 0.92587 0.88171 0.87886 0.89248 0.74407 0.86388 0.85395 0.87591 0.90412 0.87263 0.88709 0.85665 0.88586 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.58 6.47 71.98 0.47 1.05 16 3 O -0.40 -7.39 9.99 -148.98 -1.49 -8.88 16 4 C 0.09 1.46 2.57 30.62 0.08 1.54 16 5 C -0.15 -2.36 5.69 30.67 0.17 -2.19 16 6 C 0.11 1.93 6.44 86.36 0.56 2.49 16 7 N -0.58 -13.88 2.97 -820.60 -2.44 -16.32 16 8 C 0.52 16.16 7.73 87.24 0.67 16.84 16 9 O -0.54 -18.99 15.92 -3.27 -0.05 -19.04 16 10 C 0.50 18.00 7.57 87.24 0.66 18.66 16 11 O -0.51 -18.79 10.69 -3.34 -0.04 -18.83 16 12 N -0.63 -25.19 5.32 -304.98 -1.62 -26.81 16 13 C 0.13 6.29 6.26 38.16 0.24 6.52 16 14 C -0.22 -9.95 8.69 22.59 0.20 -9.76 16 15 C -0.09 -3.79 10.02 22.20 0.22 -3.57 16 16 C -0.23 -11.20 9.79 22.76 0.22 -10.98 16 17 C 0.09 4.76 5.53 -21.31 -0.12 4.64 16 18 C -0.50 -26.64 9.06 23.46 0.21 -26.42 16 19 H 0.08 4.01 7.86 -2.91 -0.02 3.99 16 20 C 0.03 1.56 5.29 85.25 0.45 2.02 16 21 N -0.84 -43.55 10.86 21.82 0.24 -43.31 16 22 Si 0.98 38.56 29.57 68.60 2.03 40.59 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 26 C -0.19 -9.70 8.55 22.86 0.20 -9.50 16 27 C 0.07 1.57 5.98 86.36 0.52 2.08 16 28 C -0.13 -2.43 5.73 30.67 0.18 -2.25 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.56 7.84 -2.39 -0.02 0.54 16 33 H 0.06 0.57 8.09 -2.39 -0.02 0.55 16 34 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.16 7.84 -2.39 -0.02 1.14 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.82 7.00 -2.39 -0.02 1.81 16 39 H 0.42 15.98 8.30 -92.71 -0.77 15.21 16 40 H 0.12 5.00 6.31 -2.91 -0.02 4.98 16 41 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 44 H 0.11 5.96 6.31 -2.91 -0.02 5.94 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.13 3.43 4.32 -47.39 -0.20 3.22 16 47 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -63.45 389.49 2.32 -61.13 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: 0.02 Total: 41.19 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.66 Total: -9.72 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.82 Total: -86.44 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -1.58 Total: -46.75 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -63.45 2.32 -61.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593664870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.503 kcal (2) G-P(sol) polarization free energy of solvation -63.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds