Wall clock time and date at job start Sat Apr 11 2020 07:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47283 * 2 1 4 4 C 1.35960 * 117.00033 * 179.97438 * 3 2 1 5 5 C 1.38546 * 120.08575 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.02011 * 179.97438 * 5 4 3 7 7 C 1.38299 * 120.19326 * 359.97438 * 6 5 4 8 8 C 1.38174 * 120.17296 * 359.71925 * 7 6 5 9 9 C 1.38788 * 119.97769 * 0.58257 * 8 7 6 10 10 N 1.39882 * 120.09943 * 179.69803 * 9 8 7 11 11 C 1.34772 * 119.99801 * 24.75978 * 10 9 8 12 12 O 1.21388 * 120.00074 * 5.70350 * 11 10 9 13 13 C 1.49336 * 120.00277 * 185.70376 * 11 10 9 14 14 O 1.21367 * 119.99384 * 6.08442 * 13 11 10 15 15 N 1.34773 * 120.00281 * 186.09056 * 13 11 10 16 16 C 1.46926 * 120.62858 * 355.15906 * 15 13 11 17 17 C 1.53196 * 108.77031 * 126.37384 * 16 15 13 18 18 C 1.53036 * 109.31522 * 54.63737 * 17 16 15 19 19 C 1.53049 * 109.53712 * 298.63289 * 18 17 16 20 20 H 1.09000 * 109.49620 * 301.41696 * 19 18 17 21 21 C 1.50694 * 109.49619 * 181.31642 * 19 18 17 22 22 H 1.07996 * 120.00259 * 359.97438 * 21 19 18 23 23 C 1.37877 * 119.99716 * 180.02562 * 21 19 18 24 24 N 1.31517 * 120.00390 * 359.97438 * 23 21 19 25 25 Si 1.86807 * 120.00111 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47100 * 59.99707 * 25 23 21 27 27 H 1.48491 * 109.47165 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46727 * 299.99992 * 25 23 21 29 29 C 1.46923 * 120.62938 * 174.88619 * 15 13 11 30 30 H 1.09011 * 109.47205 * 300.00029 * 1 2 3 31 31 H 1.08998 * 109.47263 * 59.99557 * 1 2 3 32 32 H 1.08999 * 109.47483 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47275 * 239.99491 * 2 1 3 34 34 H 1.09004 * 109.46691 * 119.99762 * 2 1 3 35 35 H 1.07997 * 119.99152 * 359.97438 * 5 4 3 36 36 H 1.08001 * 119.90052 * 179.97438 * 6 5 4 37 37 H 1.07994 * 119.91434 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.00833 * 180.27803 * 8 7 6 39 39 H 0.97001 * 119.99799 * 204.76311 * 10 9 8 40 40 H 1.08997 * 109.58711 * 246.15751 * 16 15 13 41 41 H 1.09002 * 109.58945 * 6.44943 * 16 15 13 42 42 H 1.09003 * 109.49726 * 174.58684 * 17 16 15 43 43 H 1.09004 * 109.49804 * 294.68375 * 17 16 15 44 44 H 1.09001 * 109.45907 * 58.65267 * 18 17 16 45 45 H 1.09002 * 109.46287 * 178.62614 * 18 17 16 46 46 H 0.96995 * 120.00611 * 179.97438 * 24 23 21 47 47 H 1.08997 * 109.58694 * 353.41826 * 29 15 13 48 48 H 1.09004 * 109.58553 * 113.84148 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.1998 0.4279 0.0005 6 6 5.5701 0.6105 0.0005 7 6 6.1016 1.8873 0.0000 8 6 5.2657 2.9875 -0.0063 9 6 3.8889 2.8124 0.0000 10 7 3.0404 3.9245 -0.0001 11 6 3.4721 5.1015 -0.4945 12 8 4.5576 5.1720 -1.0333 13 6 2.6152 6.3192 -0.3796 14 8 1.5813 6.2758 0.2545 15 7 2.9900 7.4661 -0.9799 16 6 4.2880 7.5649 -1.6613 17 6 4.0565 8.0555 -3.0940 18 6 3.2637 9.3640 -3.0592 19 6 1.9012 9.1198 -2.4062 20 1 1.3598 8.3587 -2.9681 21 6 1.1087 10.4015 -2.4015 22 1 1.5340 11.3009 -2.8217 23 6 -0.1589 10.4262 -1.8598 24 7 -0.6767 9.3311 -1.3477 25 14 -1.1417 12.0148 -1.8546 26 1 -1.3392 12.4793 -3.2512 27 1 -2.4629 11.7774 -1.2198 28 1 -0.4037 13.0508 -1.0881 29 6 2.1059 8.6395 -0.9706 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.7883 -0.5707 0.0005 36 1 6.2275 -0.2464 0.0009 37 1 7.1728 2.0248 0.0005 38 1 5.6836 3.9834 -0.0113 39 1 2.1412 3.8484 0.3558 40 1 4.9259 8.2723 -1.1315 41 1 4.7659 6.5855 -1.6810 42 1 5.0173 8.2251 -3.5802 43 1 3.4947 7.3044 -3.6495 44 1 3.8147 10.1071 -2.4826 45 1 3.1187 9.7280 -4.0763 46 1 -1.5683 9.3485 -0.9663 47 1 1.1434 8.3684 -0.5367 48 1 2.5623 9.4363 -0.3832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595084730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:07 Heat of formation + Delta-G solvation = -60.268995 kcal Electronic energy + Delta-G solvation = -30743.285370 eV Core-core repulsion = 26571.417947 eV Total energy + Delta-G solvation = -4171.867423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20813 -40.07947 -38.55571 -37.44187 -36.91007 -35.02578 -33.24635 -32.09170 -31.74082 -30.41359 -29.76245 -29.31335 -26.02641 -25.03752 -24.48906 -23.45074 -22.16407 -21.85041 -21.57762 -20.10263 -19.02926 -18.46919 -17.50104 -17.20062 -16.45391 -16.42650 -15.97396 -15.76058 -15.50132 -15.06149 -14.91123 -14.53871 -14.26149 -14.05072 -13.80466 -13.55532 -13.44069 -13.31130 -12.88985 -12.87065 -12.60953 -12.35086 -12.27344 -12.07561 -11.84692 -11.79660 -11.50707 -11.17432 -11.01728 -10.96234 -10.72031 -10.64689 -10.46969 -10.28317 -10.07431 -9.89464 -9.22581 -9.11691 -8.82670 -8.50571 -8.40396 -7.98826 -7.84048 -6.02297 -4.10732 0.94979 1.21399 1.83916 2.54427 2.89928 3.31455 3.37134 3.38712 3.46585 3.71508 3.87608 4.41254 4.52423 4.60139 4.62418 4.66796 4.81963 4.91361 4.98760 5.18392 5.26189 5.28133 5.34820 5.51520 5.56212 5.67721 5.68566 5.77796 5.88561 5.92632 6.04350 6.13795 6.25570 6.33879 6.38470 6.57033 6.60131 6.64647 6.74864 6.84665 6.98555 7.00808 7.12693 7.17684 7.21716 7.58296 7.81106 7.90797 7.94174 8.12066 8.33456 8.52750 8.93142 9.54876 11.03240 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.002749 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.256422 B =10182.213336 C =11679.301930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.058 3.942 3 O -0.316 6.316 4 C 0.104 3.896 5 C -0.191 4.191 6 C -0.100 4.100 7 C -0.135 4.135 8 C -0.095 4.095 9 C 0.121 3.879 10 N -0.634 5.634 11 C 0.513 3.487 12 O -0.498 6.498 13 C 0.496 3.504 14 O -0.520 6.520 15 N -0.563 5.563 16 C 0.045 3.955 17 C -0.130 4.130 18 C -0.113 4.113 19 C 0.041 3.959 20 H 0.029 0.971 21 C -0.520 4.520 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.883 5.883 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.108 3.892 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.427 0.573 40 H 0.058 0.942 41 H 0.148 0.852 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.265 0.735 47 H 0.124 0.876 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -20.176 3.560 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 O -0.230 6.230 4 C 0.057 3.943 5 C -0.210 4.210 6 C -0.119 4.119 7 C -0.154 4.154 8 C -0.115 4.115 9 C 0.026 3.974 10 N -0.279 5.279 11 C 0.298 3.702 12 O -0.375 6.375 13 C 0.277 3.723 14 O -0.397 6.397 15 N -0.295 5.295 16 C -0.077 4.077 17 C -0.168 4.168 18 C -0.151 4.151 19 C 0.022 3.978 20 H 0.047 0.953 21 C -0.558 4.558 22 H 0.077 0.923 23 C -0.140 4.140 24 N -0.520 5.520 25 Si 0.722 3.278 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.202 1.202 29 C -0.012 4.012 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.266 0.734 40 H 0.076 0.924 41 H 0.164 0.836 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.142 0.858 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.276 -19.974 3.624 22.753 hybrid contribution -0.956 0.643 0.099 1.157 sum 9.320 -19.331 3.723 21.781 Atomic orbital electron populations 1.21796 0.92516 1.02845 1.04007 1.22784 0.96042 0.81607 1.01269 1.86061 1.18351 1.29699 1.88874 1.18674 0.82932 0.92416 1.00290 1.21023 0.94189 0.97370 1.08399 1.20936 0.94162 0.97427 0.99365 1.20985 0.99951 0.91838 1.02615 1.21356 0.90271 1.01342 0.98550 1.17193 0.90330 0.83679 1.06170 1.43127 1.18094 1.07662 1.59061 1.21001 0.86959 0.84843 0.77361 1.90226 1.22719 1.83248 1.41323 1.19505 0.86130 0.84064 0.82610 1.90788 1.24236 1.83932 1.40731 1.48461 1.19388 1.11803 1.49827 1.23229 0.84639 1.07139 0.92687 1.21894 0.99855 0.99027 0.96020 1.21668 0.97953 0.95045 1.00447 1.18892 0.91064 0.96874 0.90995 0.95291 1.21048 0.99598 0.95411 1.39774 0.92271 1.25062 0.97591 0.96343 0.95052 1.69854 1.16643 1.26745 1.38764 0.86620 0.79246 0.83666 0.78264 1.20260 1.21242 1.20221 1.22441 0.94636 0.82776 1.01347 0.91282 0.91243 0.90371 0.92012 0.92034 0.85173 0.85741 0.85409 0.82845 0.73403 0.92359 0.83645 0.92182 0.92455 0.93191 0.93068 0.92543 0.85804 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.69 9.55 -19.61 -0.19 -3.88 16 4 C 0.10 1.25 6.70 -39.04 -0.26 0.99 16 5 C -0.19 -1.83 9.04 -39.46 -0.36 -2.18 16 6 C -0.10 -0.89 10.04 -39.56 -0.40 -1.29 16 7 C -0.14 -1.35 10.04 -39.58 -0.40 -1.75 16 8 C -0.10 -1.19 8.72 -39.40 -0.34 -1.54 16 9 C 0.12 1.65 6.44 -83.56 -0.54 1.11 16 10 N -0.63 -9.54 5.26 -10.19 -0.05 -9.59 16 11 C 0.51 8.72 7.61 -11.64 -0.09 8.63 16 12 O -0.50 -8.27 10.18 5.46 0.06 -8.22 16 13 C 0.50 10.13 7.75 -11.64 -0.09 10.04 16 14 O -0.52 -11.99 15.94 5.48 0.09 -11.90 16 15 N -0.56 -11.77 2.98 -173.58 -0.52 -12.29 16 16 C 0.04 0.79 6.28 -3.71 -0.02 0.77 16 17 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 18 C -0.11 -2.34 5.11 -26.69 -0.14 -2.48 16 19 C 0.04 1.02 2.24 -91.87 -0.21 0.81 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.52 -14.09 8.56 -34.44 -0.29 -14.38 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.45 11.39 55.43 0.63 -24.81 16 25 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.11 2.62 5.36 -3.93 -0.02 2.60 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 34 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 35 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.15 2.03 5.79 -52.49 -0.30 1.73 16 39 H 0.43 6.33 7.86 -40.82 -0.32 6.01 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.15 2.47 3.70 -57.23 -0.21 2.26 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.12 3.45 5.15 -51.93 -0.27 3.19 16 48 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -30.87 384.88 -8.87 -39.74 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.84 Total: 8.53 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.83 Total: 0.45 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.06 Total: -46.69 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.87 -8.87 -39.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595084730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.528 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds