Wall clock time and date at job start Sat Apr 11 2020 07:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47283 * 2 1 4 4 C 1.35960 * 117.00033 * 179.97438 * 3 2 1 5 5 C 1.38546 * 120.08575 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.02011 * 179.97438 * 5 4 3 7 7 C 1.38299 * 120.19326 * 359.97438 * 6 5 4 8 8 C 1.38174 * 120.17296 * 359.71925 * 7 6 5 9 9 C 1.38788 * 119.97769 * 0.58257 * 8 7 6 10 10 N 1.39882 * 120.09943 * 179.69803 * 9 8 7 11 11 C 1.34772 * 119.99801 * 24.75978 * 10 9 8 12 12 O 1.21388 * 120.00074 * 5.70350 * 11 10 9 13 13 C 1.49336 * 120.00277 * 185.70376 * 11 10 9 14 14 O 1.21367 * 119.99384 * 6.08442 * 13 11 10 15 15 N 1.34773 * 120.00281 * 186.09056 * 13 11 10 16 16 C 1.46926 * 120.62858 * 355.15906 * 15 13 11 17 17 C 1.53196 * 108.77031 * 126.37384 * 16 15 13 18 18 C 1.53036 * 109.31522 * 54.63737 * 17 16 15 19 19 C 1.53049 * 109.53712 * 298.63289 * 18 17 16 20 20 H 1.09000 * 109.49620 * 301.41696 * 19 18 17 21 21 C 1.50694 * 109.49619 * 181.31642 * 19 18 17 22 22 H 1.07996 * 120.00259 * 359.97438 * 21 19 18 23 23 C 1.37877 * 119.99716 * 180.02562 * 21 19 18 24 24 N 1.31517 * 120.00390 * 359.97438 * 23 21 19 25 25 Si 1.86807 * 120.00111 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47100 * 59.99707 * 25 23 21 27 27 H 1.48491 * 109.47165 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46727 * 299.99992 * 25 23 21 29 29 C 1.46923 * 120.62938 * 174.88619 * 15 13 11 30 30 H 1.09011 * 109.47205 * 300.00029 * 1 2 3 31 31 H 1.08998 * 109.47263 * 59.99557 * 1 2 3 32 32 H 1.08999 * 109.47483 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47275 * 239.99491 * 2 1 3 34 34 H 1.09004 * 109.46691 * 119.99762 * 2 1 3 35 35 H 1.07997 * 119.99152 * 359.97438 * 5 4 3 36 36 H 1.08001 * 119.90052 * 179.97438 * 6 5 4 37 37 H 1.07994 * 119.91434 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.00833 * 180.27803 * 8 7 6 39 39 H 0.97001 * 119.99799 * 204.76311 * 10 9 8 40 40 H 1.08997 * 109.58711 * 246.15751 * 16 15 13 41 41 H 1.09002 * 109.58945 * 6.44943 * 16 15 13 42 42 H 1.09003 * 109.49726 * 174.58684 * 17 16 15 43 43 H 1.09004 * 109.49804 * 294.68375 * 17 16 15 44 44 H 1.09001 * 109.45907 * 58.65267 * 18 17 16 45 45 H 1.09002 * 109.46287 * 178.62614 * 18 17 16 46 46 H 0.96995 * 120.00611 * 179.97438 * 24 23 21 47 47 H 1.08997 * 109.58694 * 353.41826 * 29 15 13 48 48 H 1.09004 * 109.58553 * 113.84148 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.1998 0.4279 0.0005 6 6 5.5701 0.6105 0.0005 7 6 6.1016 1.8873 0.0000 8 6 5.2657 2.9875 -0.0063 9 6 3.8889 2.8124 0.0000 10 7 3.0404 3.9245 -0.0001 11 6 3.4721 5.1015 -0.4945 12 8 4.5576 5.1720 -1.0333 13 6 2.6152 6.3192 -0.3796 14 8 1.5813 6.2758 0.2545 15 7 2.9900 7.4661 -0.9799 16 6 4.2880 7.5649 -1.6613 17 6 4.0565 8.0555 -3.0940 18 6 3.2637 9.3640 -3.0592 19 6 1.9012 9.1198 -2.4062 20 1 1.3598 8.3587 -2.9681 21 6 1.1087 10.4015 -2.4015 22 1 1.5340 11.3009 -2.8217 23 6 -0.1589 10.4262 -1.8598 24 7 -0.6767 9.3311 -1.3477 25 14 -1.1417 12.0148 -1.8546 26 1 -1.3392 12.4793 -3.2512 27 1 -2.4629 11.7774 -1.2198 28 1 -0.4037 13.0508 -1.0881 29 6 2.1059 8.6395 -0.9706 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.7883 -0.5707 0.0005 36 1 6.2275 -0.2464 0.0009 37 1 7.1728 2.0248 0.0005 38 1 5.6836 3.9834 -0.0113 39 1 2.1412 3.8484 0.3558 40 1 4.9259 8.2723 -1.1315 41 1 4.7659 6.5855 -1.6810 42 1 5.0173 8.2251 -3.5802 43 1 3.4947 7.3044 -3.6495 44 1 3.8147 10.1071 -2.4826 45 1 3.1187 9.7280 -4.0763 46 1 -1.5683 9.3485 -0.9663 47 1 1.1434 8.3684 -0.5367 48 1 2.5623 9.4363 -0.3832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595084730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:05 Heat of formation + Delta-G solvation = -79.295658 kcal Electronic energy + Delta-G solvation = -30744.110428 eV Core-core repulsion = 26571.417947 eV Total energy + Delta-G solvation = -4172.692481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.44440 -41.18197 -39.92354 -38.60835 -38.34713 -36.23025 -35.14418 -33.49534 -32.73280 -31.62007 -31.25662 -30.19689 -27.68939 -26.86972 -25.33475 -24.72129 -23.55530 -22.96712 -22.72406 -21.48270 -20.58285 -19.51147 -18.85032 -18.39633 -18.25347 -17.48277 -17.25893 -16.98843 -16.82290 -16.51206 -16.12950 -15.84939 -15.58610 -15.41464 -15.05926 -14.84315 -14.68803 -14.46962 -14.32848 -14.30496 -13.89129 -13.53754 -13.39993 -13.26758 -13.09260 -12.85918 -12.75270 -12.58281 -12.46798 -12.30379 -12.18135 -12.01376 -11.74001 -11.68959 -11.65269 -11.61869 -11.16823 -10.99579 -10.55372 -10.01021 -9.64360 -9.57296 -8.88693 -8.12913 -6.29856 -0.13784 0.40148 0.62143 1.17576 1.41725 1.43427 1.51378 2.03629 2.14322 2.40041 2.48439 2.80404 3.11984 3.17673 3.81563 3.94929 4.06726 4.07755 4.16961 4.19877 4.22215 4.32507 4.37174 4.42202 4.48564 4.55236 4.59290 4.72792 4.80183 4.85661 4.93207 4.99134 5.04687 5.06067 5.15827 5.21982 5.23566 5.25924 5.32169 5.39721 5.51315 5.55298 5.59881 5.81854 5.82706 5.89208 5.93315 6.26976 6.36481 6.38114 6.63442 6.80324 6.89173 7.40142 8.90875 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.002749 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.256422 B =10182.213336 C =11679.301930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.340 6.340 4 C 0.096 3.904 5 C -0.188 4.188 6 C -0.087 4.087 7 C -0.137 4.137 8 C -0.108 4.108 9 C 0.083 3.917 10 N -0.624 5.624 11 C 0.522 3.478 12 O -0.495 6.495 13 C 0.489 3.511 14 O -0.557 6.557 15 N -0.569 5.569 16 C 0.044 3.956 17 C -0.123 4.123 18 C -0.107 4.107 19 C 0.039 3.961 20 H -0.012 1.012 21 C -0.536 4.536 22 H 0.064 0.936 23 C 0.011 3.989 24 N -0.915 5.915 25 Si 0.960 3.040 26 H -0.269 1.269 27 H -0.288 1.288 28 H -0.267 1.267 29 C 0.120 3.880 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.425 0.575 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.262 0.738 47 H 0.085 0.915 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.862 -22.033 3.209 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.255 6.255 4 C 0.049 3.951 5 C -0.207 4.207 6 C -0.105 4.105 7 C -0.155 4.155 8 C -0.128 4.128 9 C -0.011 4.011 10 N -0.269 5.269 11 C 0.306 3.694 12 O -0.373 6.373 13 C 0.271 3.729 14 O -0.436 6.436 15 N -0.300 5.300 16 C -0.076 4.076 17 C -0.160 4.160 18 C -0.145 4.145 19 C 0.020 3.980 20 H 0.006 0.994 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.189 4.189 24 N -0.554 5.554 25 Si 0.785 3.215 26 H -0.194 1.194 27 H -0.213 1.213 28 H -0.192 1.192 29 C -0.001 4.001 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.263 0.737 40 H 0.093 0.907 41 H 0.176 0.824 42 H 0.119 0.881 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.103 0.897 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.726 -21.863 3.259 25.506 hybrid contribution -1.683 1.053 0.229 1.998 sum 11.043 -20.810 3.488 23.815 Atomic orbital electron populations 1.21839 0.92307 1.04195 1.02787 1.23079 0.96288 0.80279 1.02822 1.86048 1.18472 1.32081 1.88896 1.18865 0.83506 0.92453 1.00255 1.21413 0.94379 0.97845 1.07073 1.21405 0.94353 0.98121 0.96643 1.21306 1.00943 0.91553 1.01707 1.21391 0.90175 1.01849 0.99351 1.17495 0.90682 0.83633 1.09286 1.42977 1.18181 1.07576 1.58120 1.20092 0.86513 0.84400 0.78432 1.90195 1.22164 1.83127 1.41781 1.20149 0.86086 0.85049 0.81614 1.90754 1.25999 1.84691 1.42183 1.48476 1.20078 1.11156 1.50292 1.23491 0.83102 1.08482 0.92552 1.21866 1.01113 0.96891 0.96179 1.21566 0.95801 0.96983 1.00124 1.18829 0.93065 0.94951 0.91136 0.99355 1.21452 1.00215 0.96322 1.39484 0.91815 1.25899 0.98806 0.99484 0.94680 1.70043 1.16714 1.28917 1.39687 0.85578 0.77566 0.79768 0.78576 1.19385 1.21324 1.19218 1.21911 0.93660 0.83935 1.00593 0.92244 0.92727 0.87704 0.90582 0.90123 0.82301 0.82063 0.82961 0.84094 0.73717 0.90682 0.82379 0.88149 0.93615 0.92312 0.92745 0.92935 0.89708 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.70 5.46 71.98 0.39 1.09 16 3 O -0.34 -7.83 9.55 -93.10 -0.89 -8.72 16 4 C 0.10 2.21 6.70 22.62 0.15 2.36 16 5 C -0.19 -3.01 9.04 22.35 0.20 -2.80 16 6 C -0.09 -1.20 10.04 22.29 0.22 -0.97 16 7 C -0.14 -2.34 10.04 22.27 0.22 -2.12 16 8 C -0.11 -2.60 8.72 22.39 0.20 -2.40 16 9 C 0.08 2.24 6.44 38.26 0.25 2.49 16 10 N -0.62 -19.51 5.26 -304.49 -1.60 -21.11 16 11 C 0.52 18.28 7.61 87.23 0.66 18.94 16 12 O -0.49 -16.40 10.18 -3.36 -0.03 -16.43 16 13 C 0.49 20.98 7.75 87.23 0.68 21.66 16 14 O -0.56 -27.52 15.94 -3.30 -0.05 -27.57 16 15 N -0.57 -24.59 2.98 -821.44 -2.45 -27.04 16 16 C 0.04 1.51 6.28 86.36 0.54 2.05 16 17 C -0.12 -4.18 6.08 30.67 0.19 -4.00 16 18 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 19 C 0.04 2.04 2.24 -11.60 -0.03 2.01 16 20 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 21 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 22 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 23 C 0.01 0.61 5.30 84.65 0.45 1.06 16 24 N -0.92 -55.28 11.39 21.45 0.24 -55.03 16 25 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 C 0.12 6.15 5.36 86.22 0.46 6.61 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.85 7.66 -2.39 -0.02 0.83 16 34 H 0.08 0.83 7.66 -2.39 -0.02 0.81 16 35 H 0.16 1.56 6.30 -2.91 -0.02 1.54 16 36 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.14 3.68 5.79 -2.91 -0.02 3.67 16 39 H 0.42 13.45 7.86 -92.71 -0.73 12.73 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.16 5.20 3.70 -86.29 -0.32 4.88 16 42 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.08 5.05 5.15 -2.39 -0.01 5.04 16 48 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -71.20 384.88 2.91 -68.30 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.04 Total: 30.44 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 5.71 Total: 10.88 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -3.80 Total: -103.18 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.98 Total: -52.72 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.20 2.91 -68.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595084730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.999 kcal (2) G-P(sol) polarization free energy of solvation -71.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds