Wall clock time and date at job start Sat Apr 11 2020 07:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.46927 * 2 1 4 4 C 1.46895 * 111.00076 * 295.01400 * 3 2 1 5 5 C 1.50704 * 109.47106 * 288.24833 * 4 3 2 6 6 O 1.21280 * 120.00247 * 354.31504 * 5 4 3 7 7 N 1.34780 * 119.99851 * 174.30757 * 5 4 3 8 8 C 1.46499 * 119.99765 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.01343 * 34.30927 * 8 7 5 10 10 C 1.53872 * 110.03189 * 272.92394 * 8 7 5 11 11 C 1.54199 * 108.69007 * 193.57399 * 10 8 7 12 12 S 1.82917 * 105.11041 * 27.83877 * 11 10 8 13 13 O 1.42095 * 109.35259 * 244.51829 * 12 11 10 14 14 O 1.42095 * 109.35388 * 111.30808 * 12 11 10 15 15 C 1.55056 * 110.02323 * 155.68317 * 8 7 5 16 16 C 1.46897 * 111.00186 * 58.97143 * 3 2 1 17 17 C 1.52999 * 109.47346 * 66.04378 * 16 3 2 18 18 H 1.09008 * 109.46712 * 305.00324 * 17 16 3 19 19 C 1.52994 * 109.47099 * 64.99917 * 17 16 3 20 20 C 1.52997 * 109.47224 * 185.00345 * 17 16 3 21 21 C 1.50703 * 109.47306 * 175.00040 * 20 17 16 22 22 H 1.08000 * 119.99810 * 359.97438 * 21 20 17 23 23 C 1.37874 * 120.00080 * 180.02562 * 21 20 17 24 24 N 1.31519 * 120.00191 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99972 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47402 * 59.99252 * 25 23 21 27 27 H 1.48501 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46883 * 299.99042 * 25 23 21 29 29 H 1.08995 * 109.46899 * 59.72134 * 1 2 3 30 30 H 1.08998 * 109.46865 * 179.72955 * 1 2 3 31 31 H 1.09006 * 109.46942 * 299.72766 * 1 2 3 32 32 H 1.08997 * 109.47110 * 240.00303 * 2 1 3 33 33 H 1.08997 * 109.47642 * 120.00061 * 2 1 3 34 34 H 1.09002 * 109.47457 * 48.25141 * 4 3 2 35 35 H 1.09004 * 109.47530 * 168.25352 * 4 3 2 36 36 H 0.97002 * 120.00133 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.64683 * 313.38117 * 10 8 7 38 38 H 1.09006 * 109.64396 * 73.67810 * 10 8 7 39 39 H 1.08996 * 110.27472 * 268.94356 * 11 10 8 40 40 H 1.08999 * 110.41902 * 146.80849 * 11 10 8 41 41 H 1.09003 * 110.78721 * 279.99280 * 15 8 7 42 42 H 1.08997 * 110.78812 * 43.46125 * 15 8 7 43 43 H 1.09010 * 109.46575 * 306.04399 * 16 3 2 44 44 H 1.09003 * 109.47422 * 186.04494 * 16 3 2 45 45 H 1.08996 * 109.47832 * 300.00292 * 19 17 16 46 46 H 1.08998 * 109.47078 * 60.00502 * 19 17 16 47 47 H 1.09001 * 109.47066 * 180.02562 * 19 17 16 48 48 H 1.08996 * 109.47313 * 295.00176 * 20 17 16 49 49 H 1.09002 * 109.47342 * 54.99904 * 20 17 16 50 50 H 0.96997 * 120.00071 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6484 2.0747 -1.2427 5 6 2.4723 1.5338 -2.3828 6 8 3.3588 0.7352 -2.1650 7 7 2.2240 1.9374 -3.6446 8 6 3.0253 1.4120 -4.7527 9 1 3.3017 0.3763 -4.5550 10 6 4.2899 2.2682 -4.9410 11 6 4.9276 1.9155 -6.2999 12 16 3.5372 1.3548 -7.3480 13 8 3.7191 -0.0152 -7.6782 14 8 3.3080 2.3086 -8.3760 15 6 2.2246 1.5042 -6.0773 16 6 1.5286 2.1170 1.1752 17 6 2.1389 1.5152 2.4426 18 1 1.9264 0.4466 2.4760 19 6 3.6531 1.7340 2.4330 20 6 1.5331 2.1944 3.6724 21 6 2.0413 1.5196 4.9204 22 1 2.7274 0.6890 4.8439 23 6 1.6296 1.9618 6.1597 24 7 0.7937 2.9730 6.2528 25 14 2.2601 1.1258 7.7066 26 1 3.7401 1.2349 7.7601 27 1 1.6721 1.7850 8.9003 28 1 1.8697 -0.3069 7.6891 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3633 -1.0277 -0.0049 31 1 -0.3633 0.5096 0.8925 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5908 1.9091 -1.4482 35 1 1.8346 3.1433 -1.1350 36 1 1.5152 2.5763 -3.8188 37 1 4.0227 3.3248 -4.9254 38 1 4.9970 2.0590 -4.1382 39 1 5.6569 1.1147 -6.1784 40 1 5.4009 2.7945 -6.7375 41 1 1.5133 0.6822 -6.1574 42 1 1.7172 2.4656 -6.1565 43 1 0.4423 2.0403 1.2231 44 1 1.8157 3.1656 1.0962 45 1 4.0847 1.2502 1.5569 46 1 3.8656 2.8026 2.3995 47 1 4.0879 1.3049 3.3357 48 1 1.8203 3.2458 3.6853 49 1 0.4467 2.1151 3.6332 50 1 0.5044 3.2843 7.1247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602431173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:51 Heat of formation + Delta-G solvation = -106.591086 kcal Electronic energy + Delta-G solvation = -28771.588490 eV Core-core repulsion = 24733.156341 eV Total energy + Delta-G solvation = -4038.432149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.32034 -38.28073 -37.58385 -36.91431 -36.50843 -34.46103 -33.46127 -32.05096 -30.64697 -29.98326 -27.83722 -26.57800 -25.54669 -24.99568 -23.20826 -22.27384 -21.23770 -20.31896 -19.35124 -18.60012 -17.60915 -17.49879 -16.93944 -16.44709 -16.24383 -16.07370 -15.82348 -15.39989 -15.02392 -14.65862 -14.51934 -14.39110 -14.13880 -13.78076 -13.30449 -13.12585 -12.85295 -12.81830 -12.74488 -12.64735 -12.54735 -12.38601 -12.18386 -12.06274 -11.75748 -11.64487 -11.42867 -11.33000 -11.22043 -10.99223 -10.85465 -10.82921 -10.55445 -10.33272 -10.26254 -9.92895 -9.58230 -9.54205 -9.12592 -8.96235 -8.32188 -8.01059 -5.97611 -3.98319 -0.56735 1.88685 2.43626 2.69179 2.99158 3.34826 3.38970 3.41430 3.41985 3.68098 3.98987 4.05599 4.16625 4.19350 4.31184 4.48825 4.62649 4.84331 4.89529 5.04017 5.09345 5.10421 5.24932 5.31136 5.38375 5.41822 5.42454 5.53551 5.65074 5.78080 5.92305 6.00053 6.09370 6.23436 6.35996 6.42237 6.58323 6.73152 6.96002 7.07527 7.16334 7.22685 7.33720 7.40157 7.69079 7.85319 8.01113 8.02690 8.47253 9.07778 9.64986 11.13837 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.031828 B = 0.001766 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.529793 B =15849.060945 C =16033.955414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.048 3.952 3 N -0.513 5.513 4 C 0.030 3.970 5 C 0.516 3.484 6 O -0.508 6.508 7 N -0.727 5.727 8 C 0.152 3.848 9 H 0.113 0.887 10 C -0.131 4.131 11 C -0.587 4.587 12 S 2.397 3.603 13 O -0.931 6.931 14 O -0.935 6.935 15 C -0.607 4.607 16 C 0.057 3.943 17 C -0.079 4.079 18 H 0.057 0.943 19 C -0.124 4.124 20 C 0.028 3.972 21 C -0.511 4.511 22 H 0.056 0.944 23 C 0.055 3.945 24 N -0.898 5.898 25 Si 0.890 3.110 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.052 0.948 48 H 0.015 0.985 49 H 0.011 0.989 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 0.191 -27.723 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.080 4.080 3 N -0.237 5.237 4 C -0.101 4.101 5 C 0.302 3.698 6 O -0.381 6.381 7 N -0.383 5.383 8 C 0.045 3.955 9 H 0.131 0.869 10 C -0.171 4.171 11 C -0.717 4.717 12 S 2.579 3.421 13 O -0.928 6.928 14 O -0.932 6.932 15 C -0.736 4.736 16 C -0.070 4.070 17 C -0.098 4.098 18 H 0.076 0.924 19 C -0.181 4.181 20 C -0.009 4.009 21 C -0.550 4.550 22 H 0.074 0.926 23 C -0.146 4.146 24 N -0.538 5.538 25 Si 0.718 3.282 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.033 0.967 49 H 0.030 0.970 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.910 -0.601 -28.326 28.481 hybrid contribution -1.010 0.331 1.610 1.929 sum 1.899 -0.270 -26.716 26.785 Atomic orbital electron populations 1.22461 0.98785 1.02278 1.01878 1.22214 0.92129 0.90109 1.03505 1.61949 1.59449 1.02178 1.00080 1.22014 0.97470 1.00248 0.90403 1.20929 0.84485 0.81273 0.83142 1.90722 1.31196 1.32561 1.83626 1.45930 1.38040 1.48469 1.05818 1.21456 0.89159 1.00551 0.84362 0.86932 1.22380 0.97110 1.01713 0.95859 1.30463 1.17487 1.13302 1.10493 1.08875 0.79897 0.75751 0.77614 1.93654 1.84443 1.32339 1.82345 1.93636 1.84046 1.63013 1.52481 1.31060 1.16466 1.12589 1.13447 1.22440 0.97381 0.97423 0.89718 1.21203 0.95751 0.99622 0.93228 0.92441 1.21587 0.95917 1.00189 1.00401 1.19114 0.95436 0.95709 0.90647 1.21196 1.26885 1.16013 0.90868 0.92621 1.25016 0.95269 0.95181 0.99110 1.69952 1.33421 1.26188 1.24196 0.86693 0.79162 0.79654 0.82692 1.20274 1.21419 1.20325 0.93397 0.92218 0.91399 0.90779 0.89668 0.91673 0.87877 0.76127 0.89266 0.87941 0.84090 0.84002 0.83686 0.83773 0.94491 0.91387 0.93649 0.94353 0.92846 0.96658 0.97021 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 9.26 37.16 0.34 -2.01 16 2 C 0.05 0.66 5.52 -3.82 -0.02 0.64 16 3 N -0.51 -7.21 3.76 -236.07 -0.89 -8.10 16 4 C 0.03 0.31 5.34 -4.98 -0.03 0.28 16 5 C 0.52 5.26 7.40 -10.98 -0.08 5.18 16 6 O -0.51 -7.26 14.79 5.56 0.08 -7.18 16 7 N -0.73 -4.42 5.13 -52.31 -0.27 -4.69 16 8 C 0.15 0.82 2.90 -66.39 -0.19 0.63 16 9 H 0.11 0.76 7.59 -51.93 -0.39 0.37 16 10 C -0.13 -0.60 6.03 -25.65 -0.15 -0.76 16 11 C -0.59 -2.01 7.26 37.78 0.27 -1.74 16 12 S 2.40 12.29 6.11 -107.50 -0.66 11.63 16 13 O -0.93 -8.53 18.14 -57.71 -1.05 -9.57 16 14 O -0.93 -7.98 18.14 -57.71 -1.05 -9.03 16 15 C -0.61 -1.88 6.85 38.24 0.26 -1.62 16 16 C 0.06 0.92 4.08 -3.83 -0.02 0.90 16 17 C -0.08 -1.58 2.26 -90.62 -0.20 -1.78 16 18 H 0.06 1.18 6.36 -51.92 -0.33 0.85 16 19 C -0.12 -2.42 8.89 37.15 0.33 -2.09 16 20 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 21 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 22 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 23 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 24 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 25 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 29 H 0.05 0.50 6.29 -51.93 -0.33 0.17 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.93 6.27 -51.93 -0.33 0.61 16 32 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 33 H 0.09 1.32 6.42 -51.93 -0.33 0.98 16 34 H 0.07 0.56 5.98 -51.93 -0.31 0.25 16 35 H 0.10 0.91 7.81 -51.93 -0.41 0.50 16 36 H 0.40 1.25 8.59 -40.82 -0.35 0.90 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.14 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.14 0.14 8.10 -51.93 -0.42 -0.28 16 43 H 0.04 0.59 5.98 -51.92 -0.31 0.28 16 44 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 45 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -38.08 401.45 -10.38 -48.46 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.33 Total: -3.47 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 0.00 Total: -14.78 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.42 Total: -38.74 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -2.01 Total: -25.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 12.29 SS G_CDS: -0.66 Total: 11.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.08 -10.38 -48.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.129 kcal (2) G-P(sol) polarization free energy of solvation -38.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds