Wall clock time and date at job start Sat Apr 11 2020 07:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.46927 * 2 1 4 4 C 1.46895 * 111.00076 * 295.01400 * 3 2 1 5 5 C 1.50704 * 109.47106 * 288.24833 * 4 3 2 6 6 O 1.21280 * 120.00247 * 354.31504 * 5 4 3 7 7 N 1.34780 * 119.99851 * 174.30757 * 5 4 3 8 8 C 1.46499 * 119.99765 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.01343 * 34.30927 * 8 7 5 10 10 C 1.53872 * 110.03189 * 272.92394 * 8 7 5 11 11 C 1.54199 * 108.69007 * 193.57399 * 10 8 7 12 12 S 1.82917 * 105.11041 * 27.83877 * 11 10 8 13 13 O 1.42095 * 109.35259 * 244.51829 * 12 11 10 14 14 O 1.42095 * 109.35388 * 111.30808 * 12 11 10 15 15 C 1.55056 * 110.02323 * 155.68317 * 8 7 5 16 16 C 1.46897 * 111.00186 * 58.97143 * 3 2 1 17 17 C 1.52999 * 109.47346 * 66.04378 * 16 3 2 18 18 H 1.09008 * 109.46712 * 305.00324 * 17 16 3 19 19 C 1.52994 * 109.47099 * 64.99917 * 17 16 3 20 20 C 1.52997 * 109.47224 * 185.00345 * 17 16 3 21 21 C 1.50703 * 109.47306 * 175.00040 * 20 17 16 22 22 H 1.08000 * 119.99810 * 359.97438 * 21 20 17 23 23 C 1.37874 * 120.00080 * 180.02562 * 21 20 17 24 24 N 1.31519 * 120.00191 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99972 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47402 * 59.99252 * 25 23 21 27 27 H 1.48501 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46883 * 299.99042 * 25 23 21 29 29 H 1.08995 * 109.46899 * 59.72134 * 1 2 3 30 30 H 1.08998 * 109.46865 * 179.72955 * 1 2 3 31 31 H 1.09006 * 109.46942 * 299.72766 * 1 2 3 32 32 H 1.08997 * 109.47110 * 240.00303 * 2 1 3 33 33 H 1.08997 * 109.47642 * 120.00061 * 2 1 3 34 34 H 1.09002 * 109.47457 * 48.25141 * 4 3 2 35 35 H 1.09004 * 109.47530 * 168.25352 * 4 3 2 36 36 H 0.97002 * 120.00133 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.64683 * 313.38117 * 10 8 7 38 38 H 1.09006 * 109.64396 * 73.67810 * 10 8 7 39 39 H 1.08996 * 110.27472 * 268.94356 * 11 10 8 40 40 H 1.08999 * 110.41902 * 146.80849 * 11 10 8 41 41 H 1.09003 * 110.78721 * 279.99280 * 15 8 7 42 42 H 1.08997 * 110.78812 * 43.46125 * 15 8 7 43 43 H 1.09010 * 109.46575 * 306.04399 * 16 3 2 44 44 H 1.09003 * 109.47422 * 186.04494 * 16 3 2 45 45 H 1.08996 * 109.47832 * 300.00292 * 19 17 16 46 46 H 1.08998 * 109.47078 * 60.00502 * 19 17 16 47 47 H 1.09001 * 109.47066 * 180.02562 * 19 17 16 48 48 H 1.08996 * 109.47313 * 295.00176 * 20 17 16 49 49 H 1.09002 * 109.47342 * 54.99904 * 20 17 16 50 50 H 0.96997 * 120.00071 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6484 2.0747 -1.2427 5 6 2.4723 1.5338 -2.3828 6 8 3.3588 0.7352 -2.1650 7 7 2.2240 1.9374 -3.6446 8 6 3.0253 1.4120 -4.7527 9 1 3.3017 0.3763 -4.5550 10 6 4.2899 2.2682 -4.9410 11 6 4.9276 1.9155 -6.2999 12 16 3.5372 1.3548 -7.3480 13 8 3.7191 -0.0152 -7.6782 14 8 3.3080 2.3086 -8.3760 15 6 2.2246 1.5042 -6.0773 16 6 1.5286 2.1170 1.1752 17 6 2.1389 1.5152 2.4426 18 1 1.9264 0.4466 2.4760 19 6 3.6531 1.7340 2.4330 20 6 1.5331 2.1944 3.6724 21 6 2.0413 1.5196 4.9204 22 1 2.7274 0.6890 4.8439 23 6 1.6296 1.9618 6.1597 24 7 0.7937 2.9730 6.2528 25 14 2.2601 1.1258 7.7066 26 1 3.7401 1.2349 7.7601 27 1 1.6721 1.7850 8.9003 28 1 1.8697 -0.3069 7.6891 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3633 -1.0277 -0.0049 31 1 -0.3633 0.5096 0.8925 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5908 1.9091 -1.4482 35 1 1.8346 3.1433 -1.1350 36 1 1.5152 2.5763 -3.8188 37 1 4.0227 3.3248 -4.9254 38 1 4.9970 2.0590 -4.1382 39 1 5.6569 1.1147 -6.1784 40 1 5.4009 2.7945 -6.7375 41 1 1.5133 0.6822 -6.1574 42 1 1.7172 2.4656 -6.1565 43 1 0.4423 2.0403 1.2231 44 1 1.8157 3.1656 1.0962 45 1 4.0847 1.2502 1.5569 46 1 3.8656 2.8026 2.3995 47 1 4.0879 1.3049 3.3357 48 1 1.8203 3.2458 3.6853 49 1 0.4467 2.1151 3.6332 50 1 0.5044 3.2843 7.1247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602431173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:49 Heat of formation + Delta-G solvation = -136.468384 kcal Electronic energy + Delta-G solvation = -28772.884067 eV Core-core repulsion = 24733.156341 eV Total energy + Delta-G solvation = -4039.727725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.09905 -39.30116 -38.13638 -37.62395 -37.06562 -36.13205 -34.11548 -33.96214 -31.45541 -30.58182 -29.26876 -28.14350 -26.63183 -25.64697 -24.90193 -23.12704 -21.99287 -21.28146 -20.09247 -19.80476 -18.51238 -18.18867 -17.97398 -17.46374 -17.09447 -16.99477 -16.58864 -16.36029 -16.33579 -15.58122 -15.40572 -15.17728 -15.04924 -14.79370 -14.49494 -14.40267 -13.91156 -13.64875 -13.53804 -13.35195 -13.27411 -13.21841 -13.15499 -13.07422 -13.04452 -12.81959 -12.74172 -12.51407 -12.45512 -12.18270 -12.10772 -11.99029 -11.88812 -11.75158 -11.41831 -11.24822 -11.04415 -11.00448 -10.66072 -10.49779 -10.15208 -9.08019 -8.15567 -6.23469 -0.96834 1.40661 1.42754 1.48603 1.50426 1.69539 2.09944 2.43338 2.59559 3.01890 3.12003 3.17758 3.30814 3.60641 3.70611 3.89051 3.97393 4.00553 4.02085 4.18146 4.31070 4.37923 4.41746 4.52323 4.53500 4.57625 4.62155 4.64009 4.82883 4.83617 4.91948 4.92931 4.99233 5.04671 5.06591 5.18892 5.30432 5.37382 5.41925 5.51230 5.53493 5.59914 5.84145 5.92929 6.11503 6.17091 6.35927 6.61676 6.91944 7.33223 7.44111 8.95834 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.031828 B = 0.001766 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.529793 B =15849.060945 C =16033.955414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.027 3.973 5 C 0.518 3.482 6 O -0.556 6.556 7 N -0.707 5.707 8 C 0.143 3.857 9 H 0.096 0.904 10 C -0.131 4.131 11 C -0.572 4.572 12 S 2.405 3.595 13 O -0.978 6.978 14 O -0.971 6.971 15 C -0.584 4.584 16 C 0.071 3.929 17 C -0.071 4.071 18 H 0.049 0.951 19 C -0.112 4.112 20 C 0.036 3.964 21 C -0.528 4.528 22 H 0.056 0.944 23 C -0.001 4.001 24 N -0.932 5.932 25 Si 0.956 3.044 26 H -0.270 1.270 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.422 0.578 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.032 0.968 48 H -0.007 1.007 49 H -0.011 1.011 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 0.796 -28.750 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.076 4.076 3 N -0.250 5.250 4 C -0.103 4.103 5 C 0.305 3.695 6 O -0.432 6.432 7 N -0.363 5.363 8 C 0.036 3.964 9 H 0.114 0.886 10 C -0.171 4.171 11 C -0.704 4.704 12 S 2.592 3.408 13 O -0.976 6.976 14 O -0.968 6.968 15 C -0.715 4.715 16 C -0.056 4.056 17 C -0.090 4.090 18 H 0.067 0.933 19 C -0.169 4.169 20 C -0.001 4.001 21 C -0.566 4.566 22 H 0.074 0.926 23 C -0.198 4.198 24 N -0.573 5.573 25 Si 0.782 3.218 26 H -0.195 1.195 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.140 0.860 36 H 0.260 0.740 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.175 0.825 42 H 0.193 0.807 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.011 0.989 49 H 0.007 0.993 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.580 0.013 -29.431 29.544 hybrid contribution -0.919 0.174 1.913 2.129 sum 1.661 0.187 -27.518 27.568 Atomic orbital electron populations 1.22375 0.97341 1.02909 1.01977 1.22108 0.93246 0.89935 1.02283 1.61785 1.60026 1.02279 1.00931 1.22139 0.98797 1.00828 0.88580 1.20886 0.83774 0.80690 0.84200 1.90717 1.33227 1.34824 1.84456 1.45694 1.38037 1.47885 1.04638 1.21539 0.89956 1.00013 0.84893 0.88562 1.22381 0.96357 1.02768 0.95581 1.30354 1.16599 1.14243 1.09181 1.08370 0.80578 0.74085 0.77806 1.93593 1.85443 1.34758 1.83762 1.93588 1.84897 1.63391 1.54930 1.30913 1.15456 1.14925 1.10205 1.22119 0.97084 0.97452 0.88963 1.20999 0.95927 0.98782 0.93317 0.93259 1.21458 0.95465 1.00120 0.99902 1.18979 0.94124 0.94618 0.92418 1.21601 1.26745 1.16075 0.92209 0.92624 1.25886 0.95500 0.95855 1.02553 1.70075 1.34625 1.27577 1.25028 0.85633 0.78795 0.78807 0.78608 1.19497 1.20925 1.19461 0.91086 0.91452 0.93289 0.90696 0.92151 0.89269 0.86009 0.73961 0.87151 0.89602 0.83630 0.82046 0.82456 0.80715 0.94333 0.90772 0.92375 0.94268 0.94844 0.98899 0.99254 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.23 9.26 71.98 0.67 -3.57 16 2 C 0.05 1.40 5.52 86.30 0.48 1.87 16 3 N -0.53 -14.07 3.76 -900.78 -3.39 -17.46 16 4 C 0.03 0.48 5.34 85.56 0.46 0.94 16 5 C 0.52 9.38 7.40 87.66 0.65 10.03 16 6 O -0.56 -15.32 14.79 -3.03 -0.04 -15.36 16 7 N -0.71 -6.34 5.13 -437.80 -2.24 -8.58 16 8 C 0.14 1.21 2.90 45.99 0.13 1.34 16 9 H 0.10 1.21 7.59 -2.38 -0.02 1.19 16 10 C -0.13 -0.91 6.03 31.29 0.19 -0.72 16 11 C -0.57 -2.89 7.26 72.39 0.53 -2.37 16 12 S 2.40 22.03 6.11 -56.49 -0.34 21.68 16 13 O -0.98 -18.05 18.14 -127.49 -2.31 -20.36 16 14 O -0.97 -15.64 18.14 -127.49 -2.31 -17.95 16 15 C -0.58 -1.94 6.85 72.69 0.50 -1.44 16 16 C 0.07 2.23 4.08 86.30 0.35 2.58 16 17 C -0.07 -2.88 2.26 -10.80 -0.02 -2.90 16 18 H 0.05 2.06 6.36 -2.38 -0.02 2.05 16 19 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 20 C 0.04 1.86 4.45 29.85 0.13 1.99 16 21 C -0.53 -29.79 8.41 25.60 0.22 -29.58 16 22 H 0.06 3.07 7.06 -2.91 -0.02 3.05 16 23 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 24 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 25 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 29 H 0.07 1.25 6.29 -2.39 -0.02 1.24 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.30 6.27 -2.38 -0.01 1.29 16 32 H 0.07 2.01 6.54 -2.39 -0.02 2.00 16 33 H 0.06 1.89 6.42 -2.39 -0.02 1.87 16 34 H 0.09 1.17 5.98 -2.39 -0.01 1.16 16 35 H 0.12 1.72 7.81 -2.38 -0.02 1.70 16 36 H 0.42 0.76 8.59 -92.71 -0.80 -0.04 16 37 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.18 -0.43 8.10 -2.39 -0.02 -0.45 16 43 H 0.04 1.20 5.98 -2.38 -0.01 1.19 16 44 H 0.07 2.23 7.86 -2.39 -0.02 2.21 16 45 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.03 1.41 6.95 -2.39 -0.02 1.39 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 50 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -84.57 401.45 -2.82 -87.39 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.14 Total: 5.15 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 5.37 Total: -25.15 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -5.35 Total: -82.01 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -4.67 Total: -53.67 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 22.03 SS G_CDS: -0.34 Total: 21.68 kcal Total: -84.57 -2.82 -87.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.075 kcal (2) G-P(sol) polarization free energy of solvation -84.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds