Wall clock time and date at job start Sat Apr 11 2020 07:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46498 * 119.99594 * 85.00153 * 3 2 1 5 5 C 1.50695 * 109.47417 * 85.00087 * 4 3 2 6 6 H 1.08000 * 119.99673 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00350 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00306 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46887 * 90.00019 * 9 7 5 11 11 H 1.48502 * 109.47322 * 209.99761 * 9 7 5 12 12 H 1.48503 * 109.47117 * 330.00055 * 9 7 5 13 13 S 1.65591 * 119.99950 * 265.00044 * 3 2 1 14 14 O 1.42104 * 106.40084 * 203.54145 * 13 3 2 15 15 O 1.42103 * 106.40538 * 336.45791 * 13 3 2 16 16 N 1.65597 * 107.22042 * 90.00082 * 13 3 2 17 17 C 1.43740 * 120.39208 * 269.72263 * 16 13 3 18 18 C 1.53960 * 115.59077 * 268.26123 * 17 16 13 19 19 O 1.45192 * 110.63748 * 318.83501 * 18 17 16 20 20 C 1.39301 * 115.20912 * 320.69449 * 19 18 17 21 21 C 1.53155 * 106.70602 * 98.38739 * 20 19 18 22 22 C 1.54929 * 107.73871 * 35.30794 * 21 20 19 23 23 C 1.54747 * 104.30534 * 91.02752 * 22 21 20 24 24 C 1.54840 * 102.64581 * 38.63492 * 23 22 21 25 25 C 1.54079 * 104.20279 * 321.69925 * 24 23 22 26 26 C 1.47236 * 113.10438 * 272.46588 * 21 20 19 27 27 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.08999 * 109.46835 * 205.00119 * 4 3 2 33 33 H 1.09001 * 109.47298 * 324.99692 * 4 3 2 34 34 H 0.96998 * 119.99922 * 179.97438 * 8 7 5 35 35 H 1.09001 * 108.32560 * 29.64851 * 17 16 13 36 36 H 1.09004 * 108.32336 * 146.64104 * 17 16 13 37 37 H 1.08995 * 109.32265 * 198.50295 * 18 17 16 38 38 H 1.08997 * 109.21036 * 79.09170 * 18 17 16 39 39 H 1.08996 * 110.00399 * 339.08663 * 20 19 18 40 40 H 1.09000 * 110.00279 * 217.68346 * 20 19 18 41 41 H 1.09004 * 110.46760 * 209.73555 * 22 21 20 42 42 H 1.08999 * 110.46694 * 332.32009 * 22 21 20 43 43 H 1.09004 * 110.77167 * 280.34908 * 23 22 21 44 44 H 1.08996 * 110.94190 * 157.00319 * 23 22 21 45 45 H 1.09007 * 110.48210 * 203.01713 * 24 23 22 46 46 H 1.09000 * 110.48282 * 80.38422 * 24 23 22 47 47 H 1.09001 * 109.98846 * 264.20074 * 25 24 23 48 48 H 1.08995 * 110.01795 * 142.90909 * 25 24 23 49 49 H 1.08999 * 109.80805 * 297.77053 * 26 21 20 50 50 H 1.08999 * 109.80379 * 176.88639 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4947 1.7887 1.8824 6 1 4.1720 1.1110 1.3839 7 6 3.8529 2.3612 3.0844 8 7 3.0284 3.1869 3.6911 9 14 5.5093 1.9642 3.8513 10 1 6.5234 2.9364 3.3700 11 1 5.4036 2.0504 5.3301 12 1 5.9177 0.5901 3.4636 13 16 2.4122 2.1202 -1.4286 14 8 3.3284 3.1570 -1.1048 15 8 2.7096 1.0799 -2.3499 16 7 1.0432 2.8642 -1.9894 17 6 0.1380 2.1626 -2.8580 18 6 0.3973 2.3327 -4.3661 19 8 0.7398 3.7095 -4.6743 20 6 0.0185 4.6720 -3.9715 21 6 0.9012 5.1162 -2.8014 22 6 2.3722 5.1005 -3.2873 23 6 2.6124 6.5313 -3.8257 24 6 1.8410 7.4095 -2.8102 25 6 0.5726 6.5945 -2.4924 26 6 0.7368 4.2773 -1.6026 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1802 1.0757 33 1 1.3617 1.8097 1.9453 34 1 3.2802 3.5894 4.5370 35 1 0.1927 1.0995 -2.6234 36 1 -0.8751 2.5041 -2.6453 37 1 -0.4989 2.0531 -4.9199 38 1 1.2200 1.6828 -4.6641 39 1 -0.9098 4.2417 -3.5960 40 1 -0.1982 5.5218 -4.6187 41 1 3.0456 4.8877 -2.4570 42 1 2.5030 4.3670 -4.0828 43 1 2.1966 6.6424 -4.8271 44 1 3.6745 6.7764 -3.8204 45 1 1.5766 8.3676 -3.2580 46 1 2.4340 7.5598 -1.9080 47 1 -0.2534 6.9313 -3.1188 48 1 0.3114 6.7060 -1.4401 49 1 -0.2890 4.3471 -1.2408 50 1 1.4266 4.6052 -0.8250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619713460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:56:29 Heat of formation + Delta-G solvation = -117.667972 kcal Electronic energy + Delta-G solvation = -32225.432560 eV Core-core repulsion = 28186.520082 eV Total energy + Delta-G solvation = -4038.912478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 4.96 seconds Orbital eigenvalues (eV) -40.41947 -37.18200 -36.51313 -36.06063 -35.32145 -35.12034 -32.68168 -31.54091 -30.01336 -28.84066 -27.87977 -26.65676 -26.54281 -23.92547 -23.15132 -22.00585 -21.69116 -20.52113 -18.92672 -18.42118 -17.52914 -16.84862 -16.54850 -16.32977 -15.99841 -15.70377 -15.39710 -15.18327 -14.49644 -14.30365 -14.08289 -13.92863 -13.61419 -13.35068 -13.04667 -12.93628 -12.66129 -12.49571 -12.11061 -12.02938 -11.80377 -11.70954 -11.66497 -11.39366 -11.29585 -11.20109 -11.00409 -10.96937 -10.91700 -10.84972 -10.61858 -10.52237 -10.45318 -10.37188 -10.26495 -10.20557 -9.97954 -9.77184 -9.42991 -8.83605 -8.44482 -8.07970 -6.07341 -4.10972 1.17656 3.32227 3.38216 3.39123 3.42510 3.84074 4.07528 4.44156 4.58390 4.67026 4.71120 4.78378 4.92374 4.95476 5.22548 5.25702 5.28150 5.30709 5.39050 5.40137 5.43873 5.55572 5.57872 5.63751 5.69254 5.69781 5.71704 5.84142 5.88819 5.93229 5.95162 5.97683 6.08003 6.15143 6.23615 6.26904 6.29537 6.42593 6.55703 6.58513 6.64423 6.72295 6.82827 7.22529 7.33711 7.41085 7.61614 7.90488 8.20033 8.91321 9.54350 11.01197 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.004724 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.520616 B = 5925.825251 C = 7133.751655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.778 3.222 14 O -0.956 6.956 15 O -0.996 6.996 16 N -1.000 6.000 17 C 0.095 3.905 18 C 0.036 3.964 19 O -0.373 6.373 20 C 0.079 3.921 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.113 4.113 26 C 0.142 3.858 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 2.362 -13.799 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.787 3.213 14 O -0.940 6.940 15 O -0.980 6.980 16 N -0.837 5.837 17 C -0.033 4.033 18 C -0.042 4.042 19 O -0.291 6.291 20 C 0.002 3.998 21 C -0.112 4.112 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.152 4.152 26 C 0.018 3.982 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.913 2.497 -14.154 17.459 hybrid contribution 0.176 -0.223 0.978 1.018 sum -9.737 2.275 -13.176 16.540 Atomic orbital electron populations 1.22302 0.97306 1.01427 1.02054 1.21149 0.93038 0.83404 1.03509 1.57816 1.80931 1.21290 1.23292 1.19004 0.97320 0.90984 0.78942 1.21478 1.02046 1.27628 1.05531 0.92275 1.24909 0.97310 0.94826 0.96845 1.69915 1.36045 1.30281 1.17268 0.86541 0.84132 0.78965 0.78088 1.20393 1.21157 1.19807 1.02145 0.73347 0.73095 0.72704 1.93601 1.59068 1.57282 1.84036 1.93505 1.83227 1.57903 1.63387 1.58279 1.43496 1.22433 1.59463 1.21188 0.94342 0.97476 0.90299 1.23857 1.01717 0.83701 0.94933 1.87598 1.62267 1.14304 1.64949 1.22141 0.93283 0.91492 0.92914 1.21413 0.98373 0.95347 0.96076 1.22838 0.94362 0.97172 1.02446 1.22394 0.99725 0.95510 0.98144 1.22312 0.96493 0.97760 0.99585 1.22327 0.97991 0.93286 1.01576 1.20938 1.02110 0.78755 0.96440 0.91874 0.93409 0.92195 0.90730 0.89690 0.94668 0.94796 0.92723 0.90010 0.91037 0.91803 0.88596 0.93008 0.90054 0.89539 0.89799 0.92090 0.91938 0.92184 0.91366 0.91782 0.91472 0.91007 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.12 1.99 6.40 -4.04 -0.03 1.96 16 3 N -0.99 -20.33 2.82 -115.66 -0.33 -20.66 16 4 C 0.26 6.36 5.10 -5.20 -0.03 6.33 16 5 C -0.53 -14.67 9.38 -34.44 -0.32 -15.00 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 S 2.78 55.40 6.00 -107.50 -0.64 54.75 16 14 O -0.96 -22.44 13.80 -57.17 -0.79 -23.23 16 15 O -1.00 -20.70 15.73 -57.17 -0.90 -21.60 16 16 N -1.00 -15.20 2.71 -116.38 -0.31 -15.52 16 17 C 0.10 1.15 4.33 -5.01 -0.02 1.13 16 18 C 0.04 0.42 7.28 37.66 0.27 0.69 16 19 O -0.37 -4.85 7.97 -30.90 -0.25 -5.10 16 20 C 0.08 0.88 5.42 37.24 0.20 1.08 16 21 C -0.11 -1.40 0.59 -155.37 -0.09 -1.49 16 22 C -0.13 -1.98 5.24 -24.79 -0.13 -2.11 16 23 C -0.12 -1.51 6.87 -24.84 -0.17 -1.68 16 24 C -0.12 -1.41 6.81 -25.20 -0.17 -1.58 16 25 C -0.11 -1.23 5.99 -25.35 -0.15 -1.38 16 26 C 0.14 1.99 4.39 -5.04 -0.02 1.97 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.58 5.96 -51.93 -0.31 0.27 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 31 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 32 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.03 0.85 8.11 -51.93 -0.42 0.42 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 0.97 6.10 -51.93 -0.32 0.65 16 36 H 0.07 0.69 7.09 -51.93 -0.37 0.32 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.50 6.34 -51.93 -0.33 0.17 16 40 H 0.08 0.81 7.43 -51.93 -0.39 0.42 16 41 H 0.09 1.57 5.70 -51.93 -0.30 1.28 16 42 H 0.08 1.36 6.00 -51.93 -0.31 1.05 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.58 7.23 -51.93 -0.38 0.20 16 48 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.10 1.65 7.18 -51.93 -0.37 1.27 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -32.33 383.57 -10.51 -42.85 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.41 Total: 1.37 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.38 Total: -10.35 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.09 Total: -61.22 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -1.93 Total: -49.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.64 Total: 54.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.33 -10.51 -42.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619713460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.819 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.96 seconds