Wall clock time and date at job start Sat Apr 11 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46498 * 119.99594 * 85.00153 * 3 2 1 5 5 C 1.50695 * 109.47417 * 85.00087 * 4 3 2 6 6 H 1.08000 * 119.99673 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00350 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00306 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46887 * 90.00019 * 9 7 5 11 11 H 1.48502 * 109.47322 * 209.99761 * 9 7 5 12 12 H 1.48503 * 109.47117 * 330.00055 * 9 7 5 13 13 S 1.65591 * 119.99950 * 265.00044 * 3 2 1 14 14 O 1.42104 * 106.40084 * 203.54145 * 13 3 2 15 15 O 1.42103 * 106.40538 * 336.45791 * 13 3 2 16 16 N 1.65597 * 107.22042 * 90.00082 * 13 3 2 17 17 C 1.43740 * 120.39208 * 269.72263 * 16 13 3 18 18 C 1.53960 * 115.59077 * 268.26123 * 17 16 13 19 19 O 1.45192 * 110.63748 * 318.83501 * 18 17 16 20 20 C 1.39301 * 115.20912 * 320.69449 * 19 18 17 21 21 C 1.53155 * 106.70602 * 98.38739 * 20 19 18 22 22 C 1.54929 * 107.73871 * 35.30794 * 21 20 19 23 23 C 1.54747 * 104.30534 * 91.02752 * 22 21 20 24 24 C 1.54840 * 102.64581 * 38.63492 * 23 22 21 25 25 C 1.54079 * 104.20279 * 321.69925 * 24 23 22 26 26 C 1.47236 * 113.10438 * 272.46588 * 21 20 19 27 27 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.08999 * 109.46835 * 205.00119 * 4 3 2 33 33 H 1.09001 * 109.47298 * 324.99692 * 4 3 2 34 34 H 0.96998 * 119.99922 * 179.97438 * 8 7 5 35 35 H 1.09001 * 108.32560 * 29.64851 * 17 16 13 36 36 H 1.09004 * 108.32336 * 146.64104 * 17 16 13 37 37 H 1.08995 * 109.32265 * 198.50295 * 18 17 16 38 38 H 1.08997 * 109.21036 * 79.09170 * 18 17 16 39 39 H 1.08996 * 110.00399 * 339.08663 * 20 19 18 40 40 H 1.09000 * 110.00279 * 217.68346 * 20 19 18 41 41 H 1.09004 * 110.46760 * 209.73555 * 22 21 20 42 42 H 1.08999 * 110.46694 * 332.32009 * 22 21 20 43 43 H 1.09004 * 110.77167 * 280.34908 * 23 22 21 44 44 H 1.08996 * 110.94190 * 157.00319 * 23 22 21 45 45 H 1.09007 * 110.48210 * 203.01713 * 24 23 22 46 46 H 1.09000 * 110.48282 * 80.38422 * 24 23 22 47 47 H 1.09001 * 109.98846 * 264.20074 * 25 24 23 48 48 H 1.08995 * 110.01795 * 142.90909 * 25 24 23 49 49 H 1.08999 * 109.80805 * 297.77053 * 26 21 20 50 50 H 1.08999 * 109.80379 * 176.88639 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4947 1.7887 1.8824 6 1 4.1720 1.1110 1.3839 7 6 3.8529 2.3612 3.0844 8 7 3.0284 3.1869 3.6911 9 14 5.5093 1.9642 3.8513 10 1 6.5234 2.9364 3.3700 11 1 5.4036 2.0504 5.3301 12 1 5.9177 0.5901 3.4636 13 16 2.4122 2.1202 -1.4286 14 8 3.3284 3.1570 -1.1048 15 8 2.7096 1.0799 -2.3499 16 7 1.0432 2.8642 -1.9894 17 6 0.1380 2.1626 -2.8580 18 6 0.3973 2.3327 -4.3661 19 8 0.7398 3.7095 -4.6743 20 6 0.0185 4.6720 -3.9715 21 6 0.9012 5.1162 -2.8014 22 6 2.3722 5.1005 -3.2873 23 6 2.6124 6.5313 -3.8257 24 6 1.8410 7.4095 -2.8102 25 6 0.5726 6.5945 -2.4924 26 6 0.7368 4.2773 -1.6026 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1802 1.0757 33 1 1.3617 1.8097 1.9453 34 1 3.2802 3.5894 4.5370 35 1 0.1927 1.0995 -2.6234 36 1 -0.8751 2.5041 -2.6453 37 1 -0.4989 2.0531 -4.9199 38 1 1.2200 1.6828 -4.6641 39 1 -0.9098 4.2417 -3.5960 40 1 -0.1982 5.5218 -4.6187 41 1 3.0456 4.8877 -2.4570 42 1 2.5030 4.3670 -4.0828 43 1 2.1966 6.6424 -4.8271 44 1 3.6745 6.7764 -3.8204 45 1 1.5766 8.3676 -3.2580 46 1 2.4340 7.5598 -1.9080 47 1 -0.2534 6.9313 -3.1188 48 1 0.3114 6.7060 -1.4401 49 1 -0.2890 4.3471 -1.2408 50 1 1.4266 4.6052 -0.8250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619713460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:56:26 Heat of formation + Delta-G solvation = -139.288811 kcal Electronic energy + Delta-G solvation = -32226.370110 eV Core-core repulsion = 28186.520082 eV Total energy + Delta-G solvation = -4039.850028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.40525 -38.51169 -37.79393 -37.69833 -36.82806 -36.42727 -34.73517 -32.52797 -31.54495 -29.84670 -28.93884 -28.47615 -27.55098 -24.99236 -24.94134 -23.31490 -22.95527 -21.49561 -19.97075 -19.81627 -19.06824 -18.37699 -18.35746 -17.66337 -17.18519 -16.78144 -16.72136 -16.43101 -16.15403 -15.51284 -15.24847 -15.08452 -14.86111 -14.69467 -14.61650 -14.07800 -13.91334 -13.72143 -13.67386 -13.47212 -13.33534 -13.17731 -13.07485 -12.97435 -12.79976 -12.70866 -12.46360 -12.31574 -12.17589 -12.15484 -11.91587 -11.83579 -11.77714 -11.65954 -11.61872 -11.43731 -11.33186 -11.17570 -10.61811 -10.40003 -9.95497 -9.78395 -8.22341 -6.33620 -0.37223 1.35907 1.38957 1.47795 2.00492 2.37216 2.53624 3.01164 3.08608 3.33798 3.57162 3.68807 3.79266 3.82682 3.95012 4.01572 4.23324 4.38420 4.39025 4.43851 4.46073 4.47336 4.52676 4.58178 4.60549 4.68417 4.72568 4.78110 4.83589 4.91653 4.95705 5.00891 5.00907 5.11857 5.13734 5.15843 5.17674 5.23711 5.29535 5.39770 5.44619 5.49908 5.52533 5.57381 5.69176 5.71507 5.98828 6.10279 6.49270 6.73847 7.34959 8.85024 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.004724 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.520616 B = 5925.825251 C = 7133.751655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.998 5.998 4 C 0.279 3.721 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.267 1.267 13 S 2.786 3.214 14 O -1.002 7.002 15 O -1.010 7.010 16 N -0.991 5.991 17 C 0.081 3.919 18 C 0.034 3.966 19 O -0.393 6.393 20 C 0.081 3.919 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.109 4.109 26 C 0.139 3.861 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.015 0.985 33 H 0.028 0.972 34 H 0.268 0.732 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.105 0.895 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 2.507 -15.026 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.839 5.839 4 C 0.155 3.845 5 C -0.589 4.589 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.192 1.192 13 S 2.796 3.204 14 O -0.986 6.986 15 O -0.994 6.994 16 N -0.830 5.830 17 C -0.046 4.046 18 C -0.043 4.043 19 O -0.311 6.311 20 C 0.003 3.997 21 C -0.112 4.112 22 C -0.174 4.174 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.147 4.147 26 C 0.015 3.985 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.123 0.877 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.612 2.609 -15.386 20.065 hybrid contribution 1.025 -0.283 1.289 1.671 sum -11.587 2.326 -14.097 18.396 Atomic orbital electron populations 1.22220 0.94030 1.03492 1.02377 1.21400 0.95837 0.81566 1.03203 1.57726 1.81612 1.22579 1.21989 1.18513 0.95595 0.90158 0.80239 1.21805 1.03374 1.27619 1.06077 0.93554 1.25672 1.00640 0.94707 0.97344 1.69992 1.37538 1.30843 1.17681 0.85665 0.79962 0.78827 0.77942 1.20610 1.19573 1.19157 1.01609 0.73943 0.72410 0.72445 1.93545 1.61782 1.58598 1.84664 1.93472 1.84015 1.58509 1.63414 1.57851 1.42718 1.22821 1.59651 1.21581 0.95214 0.97589 0.90170 1.23942 1.02608 0.83078 0.94717 1.87585 1.63287 1.15049 1.65206 1.22285 0.93322 0.91877 0.92169 1.21431 0.96999 0.96535 0.96235 1.22765 0.95758 0.98356 1.00500 1.22388 0.99651 0.94151 0.99311 1.22316 0.96465 0.98835 0.98495 1.22337 0.98460 0.91578 1.02315 1.21091 1.02832 0.78035 0.96509 0.92923 0.91655 0.89236 0.90075 0.90987 0.96750 0.95404 0.92346 0.89623 0.87165 0.87951 0.90709 0.90487 0.88085 0.93789 0.91367 0.90317 0.92930 0.89685 0.93358 0.88618 0.91497 0.87659 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.39 16 2 C 0.11 3.63 6.40 86.38 0.55 4.19 16 3 N -1.00 -42.13 2.82 -519.85 -1.47 -43.60 16 4 C 0.28 14.23 5.10 85.63 0.44 14.67 16 5 C -0.55 -31.69 9.38 25.60 0.24 -31.45 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.92 5.46 84.65 0.46 1.39 16 8 N -0.92 -54.05 13.29 21.45 0.28 -53.76 16 9 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 S 2.79 115.16 6.00 -56.49 -0.34 114.82 16 14 O -1.00 -50.41 13.80 -128.00 -1.77 -52.18 16 15 O -1.01 -43.02 15.73 -128.00 -2.01 -45.04 16 16 N -0.99 -29.55 2.71 -522.12 -1.41 -30.96 16 17 C 0.08 1.74 4.33 87.21 0.38 2.12 16 18 C 0.03 0.71 7.28 72.31 0.53 1.23 16 19 O -0.39 -9.31 7.97 -133.49 -1.06 -10.38 16 20 C 0.08 1.49 5.42 72.03 0.39 1.88 16 21 C -0.11 -2.64 0.59 -52.74 -0.03 -2.67 16 22 C -0.14 -4.24 5.24 31.85 0.17 -4.07 16 23 C -0.12 -2.94 6.87 31.82 0.22 -2.72 16 24 C -0.12 -2.68 6.81 31.59 0.22 -2.46 16 25 C -0.11 -2.10 5.99 31.49 0.19 -1.91 16 26 C 0.14 3.82 4.39 83.97 0.37 4.19 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.41 5.96 -2.39 -0.01 1.40 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.66 6.91 -2.39 -0.02 2.64 16 31 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 32 H 0.01 0.80 7.61 -2.39 -0.02 0.78 16 33 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.09 1.80 6.10 -2.39 -0.01 1.78 16 36 H 0.11 1.58 7.09 -2.38 -0.02 1.56 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.06 6.34 -2.39 -0.02 1.04 16 40 H 0.10 1.51 7.43 -2.39 -0.02 1.50 16 41 H 0.04 1.73 5.70 -2.39 -0.01 1.72 16 42 H 0.07 2.29 6.00 -2.39 -0.01 2.28 16 43 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.10 1.28 7.23 -2.39 -0.02 1.27 16 48 H 0.07 1.31 7.71 -2.39 -0.02 1.29 16 49 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.06 2.24 7.18 -2.39 -0.02 2.22 16 Total: -1.00 -74.29 383.57 0.02 -74.27 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.92 Total: 18.51 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 4.85 Total: -19.00 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -2.60 Total: -128.32 kcal Atomic # 8 Polarization: -102.75 SS G_CDS: -4.84 Total: -107.59 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 115.16 SS G_CDS: -0.34 Total: 114.82 kcal Total: -74.29 0.02 -74.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619713460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.021 kcal (2) G-P(sol) polarization free energy of solvation -74.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds