Wall clock time and date at job start Sat Apr 11 2020 07:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35961 * 116.99983 * 2 1 4 4 C 1.38078 * 119.99921 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83580 * 180.22511 * 4 3 2 6 6 C 1.46965 * 120.07679 * 179.72130 * 5 4 3 7 7 C 1.35027 * 119.99738 * 179.97438 * 6 5 4 8 8 C 1.46257 * 119.99703 * 180.02562 * 7 6 5 9 9 O 1.21721 * 120.00181 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99771 * 180.02562 * 8 7 6 11 11 N 1.36599 * 119.99812 * 180.02562 * 10 8 7 12 12 C 1.46840 * 111.00460 * 244.21277 * 11 10 8 13 13 C 1.53027 * 109.52997 * 174.16184 * 12 11 10 14 14 C 1.53127 * 109.27907 * 59.17440 * 13 12 11 15 15 C 1.53114 * 109.16170 * 302.35263 * 14 13 12 16 16 C 1.46849 * 110.99660 * 120.00028 * 11 10 8 17 17 C 1.40030 * 119.84273 * 359.50073 * 5 4 3 18 18 C 1.37646 * 120.00085 * 0.49870 * 17 5 4 19 19 C 1.39060 * 120.16109 * 359.74949 * 18 17 5 20 20 O 1.35611 * 119.92277 * 180.02562 * 19 18 17 21 21 C 1.34762 * 117.00146 * 354.38265 * 20 19 18 22 22 H 1.08007 * 119.99651 * 5.06926 * 21 20 19 23 23 C 1.38700 * 120.00555 * 185.06097 * 21 20 19 24 24 N 1.31523 * 119.99880 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00386 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47328 * 60.00403 * 25 23 21 27 27 H 1.48498 * 109.47309 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47368 * 300.00425 * 25 23 21 29 29 H 1.08995 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47177 * 299.99720 * 1 2 3 31 31 H 1.09004 * 109.47615 * 59.99218 * 1 2 3 32 32 H 1.07992 * 120.08388 * 359.95115 * 4 3 2 33 33 H 1.07998 * 120.00271 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.99990 * 0.02562 * 7 6 5 35 35 H 0.96996 * 119.99816 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.45884 * 294.17971 * 12 11 10 37 37 H 1.09003 * 109.46293 * 54.14251 * 12 11 10 38 38 H 1.09007 * 109.50582 * 299.24139 * 13 12 11 39 39 H 1.08999 * 109.51046 * 179.12221 * 13 12 11 40 40 H 1.08992 * 109.52336 * 182.44003 * 14 13 12 41 41 H 1.08998 * 109.51364 * 62.25279 * 14 13 12 42 42 H 1.09005 * 109.50139 * 297.70939 * 15 14 13 43 43 H 1.08997 * 109.50774 * 177.59111 * 15 14 13 44 44 H 1.09003 * 109.46627 * 305.85548 * 16 11 10 45 45 H 1.08999 * 109.45941 * 65.82517 * 16 11 10 46 46 H 1.07998 * 120.00424 * 180.25299 * 17 5 4 47 47 H 1.07997 * 119.91962 * 179.72644 * 18 17 5 48 48 H 0.97001 * 120.00296 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 0.0005 5 6 1.9332 3.6148 -0.0042 6 6 1.1379 4.8507 -0.0099 7 6 1.7560 6.0512 -0.0140 8 6 0.9645 7.2811 -0.0190 9 8 -0.2513 7.2225 -0.0191 10 7 1.5815 8.4795 -0.0236 11 7 0.8423 9.6282 -0.0278 12 6 1.0588 10.3889 -1.2650 13 6 0.1103 11.5892 -1.3001 14 6 0.3729 12.4770 -0.0804 15 6 0.1879 11.6482 1.1937 16 6 1.1343 10.4460 1.1564 17 6 3.3319 3.6803 0.0011 18 6 4.0752 2.5218 0.0005 19 6 3.4405 1.2845 0.0000 20 8 4.1775 0.1461 0.0001 21 6 5.5131 0.2820 -0.1169 22 1 5.9573 1.2665 -0.1228 23 6 6.3174 -0.8423 -0.2296 24 7 5.7766 -2.0412 -0.2228 25 14 8.1689 -0.6540 -0.3911 26 1 8.7010 0.0493 0.8037 27 1 8.7957 -1.9961 -0.4960 28 1 8.4818 0.1347 -1.6099 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 0.2156 2.3145 0.0002 33 1 0.0592 4.7987 -0.0099 34 1 2.8347 6.1032 -0.0135 35 1 2.5503 8.5261 -0.0239 36 1 2.0902 10.7398 -1.2997 37 1 0.8646 9.7472 -2.1245 38 1 -0.9216 11.2384 -1.2793 39 1 0.2820 12.1623 -2.2112 40 1 -0.3297 13.3102 -0.0783 41 1 1.3928 12.8594 -0.1213 42 1 -0.8428 11.2982 1.2536 43 1 0.4151 12.2633 2.0643 44 1 0.9947 9.8460 2.0557 45 1 2.1652 10.7968 1.1103 46 1 3.8276 4.6398 0.0015 47 1 5.1539 2.5738 0.0002 48 1 6.3390 -2.8275 -0.3020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008138058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:32 Heat of formation + Delta-G solvation = -48.335001 kcal Electronic energy + Delta-G solvation = -28957.985478 eV Core-core repulsion = 24786.635551 eV Total energy + Delta-G solvation = -4171.349926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34242 -41.10011 -39.33921 -39.28716 -38.03590 -35.80805 -34.61802 -33.89960 -31.86234 -31.57853 -31.19625 -29.88324 -27.87256 -27.36941 -25.60227 -24.09499 -24.09139 -23.30829 -22.16712 -21.18601 -20.32281 -19.93502 -19.32468 -18.70966 -18.07756 -17.51670 -16.95119 -16.67520 -16.51909 -16.33197 -15.86739 -15.58462 -15.55677 -15.28110 -15.20438 -15.16226 -15.03534 -14.57554 -14.39550 -14.33669 -13.91109 -13.65182 -13.31955 -13.25878 -13.22307 -12.87407 -12.65091 -12.49560 -12.23231 -12.20037 -12.12245 -12.01383 -11.71761 -11.63002 -11.50959 -11.33226 -10.97729 -10.91313 -10.51855 -10.24263 -9.74131 -9.47372 -8.53144 -8.46567 -6.11116 -0.30547 0.55256 1.12372 1.37296 1.49578 1.54034 1.72328 2.17729 2.37875 2.55775 2.87052 3.14956 3.34706 3.38048 3.69527 3.89096 3.92959 3.96664 4.01836 4.14581 4.19890 4.24862 4.32651 4.33099 4.39695 4.42638 4.52169 4.53639 4.56349 4.63187 4.71626 4.82828 4.83217 4.90702 4.91268 5.07300 5.08728 5.10790 5.18755 5.25157 5.30026 5.43806 5.45724 5.51801 5.77359 5.85037 5.92379 5.98342 6.28419 6.51886 6.60044 6.95785 7.59583 7.76078 8.74945 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.001902 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.409725 B =14720.984402 C =16214.303463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.037 3.963 4 C -0.134 4.134 5 C -0.132 4.132 6 C 0.017 3.983 7 C -0.234 4.234 8 C 0.568 3.432 9 O -0.573 6.573 10 N -0.572 5.572 11 N -0.322 5.322 12 C 0.038 3.962 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.113 4.113 16 C 0.039 3.961 17 C -0.065 4.065 18 C -0.218 4.218 19 C 0.101 3.899 20 O -0.212 6.212 21 C -0.416 4.416 22 H 0.110 0.890 23 C -0.023 4.023 24 N -0.914 5.914 25 Si 1.021 2.979 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.255 1.255 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.159 0.841 47 H 0.138 0.862 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 27.290 0.123 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.008 4.008 4 C -0.152 4.152 5 C -0.134 4.134 6 C -0.003 4.003 7 C -0.256 4.256 8 C 0.360 3.640 9 O -0.452 6.452 10 N -0.316 5.316 11 N -0.140 5.140 12 C -0.089 4.089 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.151 4.151 16 C -0.089 4.089 17 C -0.082 4.082 18 C -0.238 4.238 19 C 0.049 3.951 20 O -0.117 6.117 21 C -0.491 4.491 22 H 0.128 0.872 23 C -0.221 4.221 24 N -0.551 5.551 25 Si 0.840 3.160 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.179 1.179 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.237 0.763 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.176 0.824 47 H 0.155 0.845 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.964 26.448 0.148 27.622 hybrid contribution 1.671 -0.278 -0.084 1.696 sum -6.293 26.170 0.064 26.916 Atomic orbital electron populations 1.23274 0.77109 1.04974 1.02084 1.86190 1.22939 1.26870 1.89890 1.18384 0.89145 0.85802 1.07423 1.21259 1.00116 0.90063 1.03800 1.18509 0.93016 0.91924 1.09905 1.22104 0.99313 0.90302 0.88604 1.22655 1.01126 0.90395 1.11375 1.18444 0.87261 0.83314 0.75009 1.90763 1.15902 1.87686 1.50893 1.45071 1.07894 1.01880 1.76719 1.62743 1.47790 0.99664 1.03816 1.22642 0.99503 0.95535 0.91224 1.21581 0.99165 0.94725 0.99686 1.21612 1.02722 0.97914 0.93458 1.21582 0.99318 0.94922 0.99326 1.22646 0.99232 0.94844 0.92157 1.21299 0.92542 0.97944 0.96454 1.21041 1.01140 0.90784 1.10797 1.19592 0.89543 0.88172 0.97780 1.83977 1.20240 1.27842 1.79680 1.21948 0.78820 0.95919 1.52428 0.87236 1.26693 1.06207 0.93546 0.95669 1.70203 1.38610 0.98812 1.47463 0.84612 0.73017 0.78294 0.80078 1.17819 1.19976 1.17892 0.87248 0.91585 0.91658 0.82759 0.85536 0.82789 0.76281 0.92685 0.91501 0.92286 0.89269 0.90269 0.90958 0.92258 0.89181 0.91249 0.92615 0.82375 0.84465 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.21 10.28 -79.14 -0.81 -16.02 16 3 C 0.04 1.63 6.70 22.57 0.15 1.78 16 4 C -0.13 -4.56 8.77 22.65 0.20 -4.36 16 5 C -0.13 -4.11 5.87 -20.13 -0.12 -4.23 16 6 C 0.02 0.44 9.45 23.82 0.23 0.66 16 7 C -0.23 -5.23 9.41 23.62 0.22 -5.01 16 8 C 0.57 14.51 7.84 86.33 0.68 15.18 16 9 O -0.57 -19.72 16.56 -4.41 -0.07 -19.80 16 10 N -0.57 -10.90 4.77 -176.68 -0.84 -11.74 16 11 N -0.32 -6.18 4.50 -514.02 -2.31 -8.49 16 12 C 0.04 0.57 5.83 86.32 0.50 1.08 16 13 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 14 C -0.12 -1.09 6.00 30.68 0.18 -0.91 16 15 C -0.11 -1.31 6.09 30.65 0.19 -1.12 16 16 C 0.04 0.56 5.83 86.33 0.50 1.06 16 17 C -0.06 -2.04 9.40 22.56 0.21 -1.82 16 18 C -0.22 -8.89 9.14 22.33 0.20 -8.68 16 19 C 0.10 5.01 6.67 22.80 0.15 5.16 16 20 O -0.21 -12.76 9.52 -6.54 -0.06 -12.83 16 21 C -0.42 -23.58 9.48 67.93 0.64 -22.94 16 22 H 0.11 5.51 5.18 -2.91 -0.02 5.49 16 23 C -0.02 -1.27 5.49 84.85 0.47 -0.80 16 24 N -0.91 -55.89 13.67 21.62 0.30 -55.60 16 25 Si 1.02 41.50 29.55 68.60 2.03 43.52 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 29 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 31 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 32 H 0.15 4.23 6.28 -2.91 -0.02 4.22 16 33 H 0.13 3.36 7.52 -2.91 -0.02 3.34 16 34 H 0.15 2.54 6.06 -2.91 -0.02 2.53 16 35 H 0.40 4.99 8.81 -215.50 -1.90 3.10 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.16 3.58 6.15 -2.91 -0.02 3.56 16 47 H 0.14 5.46 5.61 -2.91 -0.02 5.44 16 48 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.44 396.87 3.02 -77.42 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.91 Total: 27.94 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 5.71 Total: -24.40 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -2.86 Total: -75.83 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.95 Total: -48.65 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -80.44 3.02 -77.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008138058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.081 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds