Wall clock time and date at job start Sat Apr 11 2020 07:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 C 1.50701 * 119.93158 * 179.77035 * 6 5 4 8 8 C 1.53003 * 109.47173 * 270.02640 * 7 6 5 9 9 C 1.50692 * 109.47175 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00262 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00273 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00597 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47033 * 89.99459 * 12 11 9 14 14 H 1.07993 * 120.00143 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99679 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99893 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00376 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47138 * 90.00004 * 17 15 13 19 19 H 1.48504 * 109.47482 * 210.00200 * 17 15 13 20 20 H 1.48503 * 109.47308 * 330.00298 * 17 15 13 21 21 C 1.46504 * 119.99888 * 359.97438 * 11 9 8 22 22 C 1.53004 * 109.46925 * 90.00066 * 21 11 9 23 23 C 1.47198 * 109.46930 * 180.02562 * 22 21 11 24 24 N 9.04198 * 99.21611 * 312.49732 * 2 1 3 25 25 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 26 26 C 1.38563 * 119.99940 * 359.97369 * 25 6 5 27 27 O 1.35997 * 120.07546 * 180.02562 * 26 25 6 28 28 C 1.42902 * 116.99582 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 31 31 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 34 34 H 1.09000 * 109.46763 * 30.02282 * 7 6 5 35 35 H 1.08993 * 109.47638 * 150.02455 * 7 6 5 36 36 H 1.08995 * 109.46896 * 300.00239 * 8 7 6 37 37 H 1.09001 * 109.46846 * 59.99702 * 8 7 6 38 38 H 1.08998 * 109.47136 * 209.99801 * 12 11 9 39 39 H 1.09003 * 109.46746 * 329.99847 * 12 11 9 40 40 H 0.97000 * 119.99804 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47426 * 210.00062 * 21 11 9 42 42 H 1.09005 * 109.47370 * 330.00537 * 21 11 9 43 43 H 1.09000 * 109.47506 * 300.00382 * 22 21 11 44 44 H 1.08997 * 109.46975 * 60.00049 * 22 21 11 45 45 H 1.08004 * 120.00331 * 179.97438 * 25 6 5 46 46 H 1.09007 * 109.46665 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47287 * 299.99772 * 28 27 26 48 48 H 1.09001 * 109.47198 * 60.00379 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9836 5.0244 -0.0015 8 6 4.2140 5.4788 -1.4442 9 6 4.8942 6.8235 -1.4448 10 8 5.1674 7.3654 -0.3947 11 7 5.1981 7.4246 -2.6122 12 6 5.8599 8.7316 -2.6128 13 6 7.3544 8.5379 -2.6133 14 1 7.7697 7.5410 -2.6137 15 6 8.1915 9.6335 -2.6134 16 7 9.4958 9.4645 -2.6144 17 14 7.4731 11.3578 -2.6122 18 1 7.2838 11.8141 -1.2118 19 1 8.4015 12.2814 -3.3125 20 1 6.1630 11.3489 -3.3112 21 6 4.8677 6.7703 -3.8807 22 6 3.4652 7.1933 -4.3224 23 6 3.1329 6.5355 -5.5966 24 7 2.8772 6.0295 -6.5807 25 6 4.0602 2.5235 -0.0005 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 0.0010 28 6 5.6003 0.3008 0.0009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2146 2.3197 -0.0099 33 1 1.3341 4.5115 -0.0026 34 1 3.3537 5.7508 0.5120 35 1 4.9417 4.9468 0.5123 36 1 4.8438 4.7524 -1.9577 37 1 3.2559 5.5565 -1.9581 38 1 5.5652 9.2876 -3.5028 39 1 5.5660 9.2880 -1.7228 40 1 10.0846 10.2353 -2.6149 41 1 5.5919 7.0640 -4.6405 42 1 4.8966 5.6885 -3.7500 43 1 2.7409 6.8996 -3.5626 44 1 3.4362 8.2750 -4.4531 45 1 5.1386 2.5841 -0.0005 46 1 6.0716 -0.6821 0.0022 47 1 5.9066 0.8498 -0.8896 48 1 5.9065 0.8513 0.8904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057027422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:42 Heat of formation + Delta-G solvation = -59.461691 kcal Electronic energy + Delta-G solvation = -29710.240685 eV Core-core repulsion = 25538.408269 eV Total energy + Delta-G solvation = -4171.832416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76900 -39.47637 -38.62293 -37.48103 -36.91461 -35.37541 -33.48042 -32.71498 -31.03467 -30.51534 -29.86097 -28.17788 -27.45354 -27.14105 -24.56720 -23.97126 -22.37587 -22.17556 -21.00261 -18.60861 -18.50023 -17.75194 -17.27552 -16.96404 -16.84929 -16.48580 -16.26446 -15.67620 -15.43829 -15.15387 -14.94519 -14.73267 -14.65864 -14.34426 -14.09341 -13.79131 -13.55739 -13.28958 -12.96025 -12.69580 -12.63040 -12.50000 -12.39240 -12.31397 -12.22138 -11.96833 -11.78585 -11.59020 -11.40828 -11.38794 -11.21036 -11.11838 -10.98640 -10.91020 -10.73677 -10.57320 -10.23480 -9.61652 -9.16248 -8.85278 -8.64283 -7.92826 -7.91599 -6.13890 -4.13458 1.10257 1.25492 2.67172 2.75987 3.05221 3.09908 3.21520 3.24798 3.30141 3.32674 3.46183 3.60577 4.11819 4.34291 4.55750 4.61407 4.74325 4.87660 4.88047 4.92367 4.95500 5.02012 5.02626 5.09119 5.12031 5.16393 5.18836 5.23639 5.24190 5.31815 5.35959 5.38244 5.51062 5.62925 5.76195 5.90060 5.98601 6.03036 6.09644 6.21265 6.49228 6.54871 6.58378 6.84513 6.85247 7.18043 7.38760 7.51751 7.54175 8.07248 8.39906 8.81874 8.90374 9.45769 10.99374 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.002531 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.811999 B =11061.303339 C =12092.081819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.089 3.911 4 C -0.170 4.170 5 C -0.114 4.114 6 C -0.071 4.071 7 C -0.063 4.063 8 C -0.136 4.136 9 C 0.509 3.491 10 O -0.533 6.533 11 N -0.593 5.593 12 C 0.214 3.786 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.265 1.265 21 C 0.117 3.883 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.442 5.442 25 C -0.168 4.168 26 C 0.101 3.899 27 O -0.309 6.309 28 C 0.025 3.975 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.099 0.901 47 H 0.057 0.943 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 -15.325 4.339 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.044 3.956 4 C -0.189 4.189 5 C -0.132 4.132 6 C -0.072 4.072 7 C -0.101 4.101 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.409 6.409 11 N -0.325 5.325 12 C 0.094 3.906 13 C -0.569 4.569 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.103 4.103 24 N -0.120 5.120 25 C -0.186 4.186 26 C 0.055 3.945 27 O -0.223 6.223 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.117 0.883 47 H 0.076 0.924 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.356 -16.061 3.434 23.895 hybrid contribution -0.074 1.429 0.239 1.451 sum -17.430 -14.632 3.673 23.051 Atomic orbital electron populations 1.23039 0.78792 1.03806 1.01166 1.86161 1.20819 1.26084 1.89251 1.18237 0.89139 0.85168 1.03064 1.21035 0.99792 0.91510 1.06571 1.20787 0.93902 0.97049 1.01472 1.19690 0.93290 0.94830 0.99348 1.20317 1.01615 0.92175 0.95990 1.21739 1.01709 0.95737 0.98473 1.20419 0.79262 0.86825 0.83879 1.90692 1.53604 1.65819 1.30804 1.47898 1.58500 1.22070 1.03996 1.19720 0.93610 0.79753 0.97567 1.21301 0.88667 0.95327 1.51619 0.90703 1.24865 0.94698 0.99028 0.94417 1.69894 1.02468 1.30816 1.50247 0.86866 0.79284 0.84737 0.78864 1.19910 1.21136 1.18989 1.21328 0.93344 0.97959 0.88275 1.19893 1.00208 1.01548 0.87562 1.29047 0.93203 0.93420 0.94583 1.81204 1.08992 1.09880 1.11896 1.21044 1.00608 0.90498 1.06482 1.18244 0.88210 0.86119 1.01881 1.86152 1.18781 1.28301 1.89048 1.23094 0.78463 1.03854 1.01615 0.92802 0.92770 0.88383 0.84919 0.85403 0.89950 0.89986 0.89111 0.89331 0.95065 0.94268 0.92517 0.88617 0.90201 0.87458 0.86722 0.84513 0.88261 0.92441 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.51 10.28 -34.23 -0.35 -3.86 16 3 C 0.09 1.04 6.70 -39.12 -0.26 0.77 16 4 C -0.17 -1.64 9.04 -39.46 -0.36 -2.00 16 5 C -0.11 -1.11 9.69 -39.58 -0.38 -1.49 16 6 C -0.07 -0.77 5.13 -104.62 -0.54 -1.31 16 7 C -0.06 -0.74 4.63 -27.88 -0.13 -0.87 16 8 C -0.14 -1.61 4.23 -27.89 -0.12 -1.73 16 9 C 0.51 8.66 7.67 -10.99 -0.08 8.58 16 10 O -0.53 -11.49 15.56 5.55 0.09 -11.40 16 11 N -0.59 -10.14 2.46 -175.05 -0.43 -10.57 16 12 C 0.21 4.62 4.23 -5.19 -0.02 4.60 16 13 C -0.53 -14.17 9.94 -34.44 -0.34 -14.52 16 14 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 17 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 21 C 0.12 1.47 5.17 -4.04 -0.02 1.45 16 22 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 23 C 0.22 2.47 15.43 -20.77 -0.32 2.15 16 24 N -0.44 -6.32 18.54 42.14 0.78 -5.54 16 25 C -0.17 -1.86 8.69 -39.46 -0.34 -2.21 16 26 C 0.10 1.22 6.70 -39.12 -0.26 0.96 16 27 O -0.31 -3.74 10.28 -34.24 -0.35 -4.09 16 28 C 0.02 0.21 9.81 101.05 0.99 1.20 16 29 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 30 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 35 H 0.08 1.07 8.04 -51.93 -0.42 0.66 16 36 H 0.09 1.00 7.40 -51.93 -0.38 0.61 16 37 H 0.09 0.81 7.18 -51.93 -0.37 0.44 16 38 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 39 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 42 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 43 H 0.11 0.78 7.22 -51.93 -0.37 0.41 16 44 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.14 1.36 6.30 -52.48 -0.33 1.03 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 48 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -35.87 406.15 -6.49 -42.36 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.98 Total: -0.92 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.47 Total: -1.98 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 1.12 Total: -42.00 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.62 Total: -19.35 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.87 -6.49 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.097 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds