Wall clock time and date at job start Sat Apr 11 2020 07:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 C 1.50701 * 119.93158 * 179.77035 * 6 5 4 8 8 C 1.53003 * 109.47173 * 270.02640 * 7 6 5 9 9 C 1.50692 * 109.47175 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00262 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00273 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00597 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47033 * 89.99459 * 12 11 9 14 14 H 1.07993 * 120.00143 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99679 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99893 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00376 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47138 * 90.00004 * 17 15 13 19 19 H 1.48504 * 109.47482 * 210.00200 * 17 15 13 20 20 H 1.48503 * 109.47308 * 330.00298 * 17 15 13 21 21 C 1.46504 * 119.99888 * 359.97438 * 11 9 8 22 22 C 1.53004 * 109.46925 * 90.00066 * 21 11 9 23 23 C 1.47198 * 109.46930 * 180.02562 * 22 21 11 24 24 N 9.04198 * 99.21611 * 312.49732 * 2 1 3 25 25 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 26 26 C 1.38563 * 119.99940 * 359.97369 * 25 6 5 27 27 O 1.35997 * 120.07546 * 180.02562 * 26 25 6 28 28 C 1.42902 * 116.99582 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 31 31 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 34 34 H 1.09000 * 109.46763 * 30.02282 * 7 6 5 35 35 H 1.08993 * 109.47638 * 150.02455 * 7 6 5 36 36 H 1.08995 * 109.46896 * 300.00239 * 8 7 6 37 37 H 1.09001 * 109.46846 * 59.99702 * 8 7 6 38 38 H 1.08998 * 109.47136 * 209.99801 * 12 11 9 39 39 H 1.09003 * 109.46746 * 329.99847 * 12 11 9 40 40 H 0.97000 * 119.99804 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47426 * 210.00062 * 21 11 9 42 42 H 1.09005 * 109.47370 * 330.00537 * 21 11 9 43 43 H 1.09000 * 109.47506 * 300.00382 * 22 21 11 44 44 H 1.08997 * 109.46975 * 60.00049 * 22 21 11 45 45 H 1.08004 * 120.00331 * 179.97438 * 25 6 5 46 46 H 1.09007 * 109.46665 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47287 * 299.99772 * 28 27 26 48 48 H 1.09001 * 109.47198 * 60.00379 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9836 5.0244 -0.0015 8 6 4.2140 5.4788 -1.4442 9 6 4.8942 6.8235 -1.4448 10 8 5.1674 7.3654 -0.3947 11 7 5.1981 7.4246 -2.6122 12 6 5.8599 8.7316 -2.6128 13 6 7.3544 8.5379 -2.6133 14 1 7.7697 7.5410 -2.6137 15 6 8.1915 9.6335 -2.6134 16 7 9.4958 9.4645 -2.6144 17 14 7.4731 11.3578 -2.6122 18 1 7.2838 11.8141 -1.2118 19 1 8.4015 12.2814 -3.3125 20 1 6.1630 11.3489 -3.3112 21 6 4.8677 6.7703 -3.8807 22 6 3.4652 7.1933 -4.3224 23 6 3.1329 6.5355 -5.5966 24 7 2.8772 6.0295 -6.5807 25 6 4.0602 2.5235 -0.0005 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 0.0010 28 6 5.6003 0.3008 0.0009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2146 2.3197 -0.0099 33 1 1.3341 4.5115 -0.0026 34 1 3.3537 5.7508 0.5120 35 1 4.9417 4.9468 0.5123 36 1 4.8438 4.7524 -1.9577 37 1 3.2559 5.5565 -1.9581 38 1 5.5652 9.2876 -3.5028 39 1 5.5660 9.2880 -1.7228 40 1 10.0846 10.2353 -2.6149 41 1 5.5919 7.0640 -4.6405 42 1 4.8966 5.6885 -3.7500 43 1 2.7409 6.8996 -3.5626 44 1 3.4362 8.2750 -4.4531 45 1 5.1386 2.5841 -0.0005 46 1 6.0716 -0.6821 0.0022 47 1 5.9066 0.8498 -0.8896 48 1 5.9065 0.8513 0.8904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057027422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:41 Heat of formation + Delta-G solvation = -82.128972 kcal Electronic energy + Delta-G solvation = -29711.223612 eV Core-core repulsion = 25538.408269 eV Total energy + Delta-G solvation = -4172.815343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54708 -40.77699 -39.36979 -38.31234 -37.94256 -36.69306 -34.87774 -34.22111 -32.29831 -31.26526 -30.84047 -29.56104 -28.07094 -28.02655 -25.64765 -25.18605 -23.66309 -23.09483 -21.91999 -19.79069 -19.35943 -19.14172 -18.45671 -18.12064 -17.78448 -17.54966 -17.10005 -16.95603 -16.36925 -16.11362 -15.94023 -15.67637 -15.65998 -15.34937 -15.18115 -14.80111 -14.68790 -14.46820 -14.15899 -13.79300 -13.71498 -13.66549 -13.52215 -13.34509 -13.02950 -12.95812 -12.91989 -12.78584 -12.60354 -12.36536 -12.13964 -12.05044 -11.97878 -11.96505 -11.91343 -11.69630 -11.66987 -11.62337 -10.75610 -10.56533 -9.64234 -9.41295 -8.71310 -8.26464 -6.30814 0.32539 0.45935 1.39923 1.43882 1.51248 1.71875 1.88027 1.91620 2.32862 2.37950 2.38660 2.41506 2.74590 3.08667 3.18264 3.67179 3.85580 4.00952 4.07590 4.11674 4.13930 4.19409 4.26069 4.34764 4.38615 4.42778 4.45189 4.49919 4.50184 4.60737 4.70931 4.73413 4.77647 4.78878 4.85066 4.90765 5.02707 5.08459 5.14547 5.21785 5.29296 5.34811 5.55113 5.67667 5.69988 5.78289 6.13840 6.31167 6.64106 6.65158 6.72170 6.75302 7.29985 7.50899 8.90452 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.002531 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.811999 B =11061.303339 C =12092.081819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.074 3.926 4 C -0.166 4.166 5 C -0.109 4.109 6 C -0.077 4.077 7 C -0.056 4.056 8 C -0.124 4.124 9 C 0.504 3.496 10 O -0.586 6.586 11 N -0.596 5.596 12 C 0.221 3.779 13 C -0.531 4.531 14 H 0.028 0.972 15 C 0.006 3.994 16 N -0.951 5.951 17 Si 0.944 3.056 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.226 1.226 21 C 0.112 3.888 22 C -0.037 4.037 23 C 0.245 3.755 24 N -0.493 5.493 25 C -0.173 4.173 26 C 0.077 3.923 27 O -0.331 6.331 28 C 0.019 3.981 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.142 0.858 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.117 0.883 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 -14.856 3.790 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.029 3.971 4 C -0.184 4.184 5 C -0.127 4.127 6 C -0.077 4.077 7 C -0.094 4.094 8 C -0.164 4.164 9 C 0.294 3.706 10 O -0.466 6.466 11 N -0.326 5.326 12 C 0.098 3.902 13 C -0.570 4.570 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.591 5.591 17 Si 0.767 3.233 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.149 1.149 21 C -0.013 4.013 22 C -0.078 4.078 23 C -0.073 4.073 24 N -0.171 5.171 25 C -0.192 4.192 26 C 0.032 3.968 27 O -0.246 6.246 28 C -0.075 4.075 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.159 0.841 44 H 0.147 0.853 45 H 0.157 0.843 46 H 0.135 0.865 47 H 0.079 0.921 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.915 -15.632 2.844 26.266 hybrid contribution 1.066 1.143 0.460 1.630 sum -19.849 -14.489 3.304 24.795 Atomic orbital electron populations 1.23330 0.76614 1.05348 1.02322 1.86125 1.23208 1.26367 1.89290 1.18560 0.89308 0.86023 1.03207 1.21334 1.01078 0.90679 1.05353 1.21066 0.93437 0.98073 1.00123 1.19604 0.93914 0.93840 1.00362 1.20190 1.00626 0.92824 0.95755 1.21750 1.03133 0.92306 0.99177 1.21322 0.78456 0.88016 0.82856 1.90669 1.55838 1.67440 1.32696 1.47872 1.57908 1.20960 1.05897 1.19405 0.90403 0.82434 0.97916 1.21634 0.91830 0.93241 1.50303 0.95326 1.25877 0.94919 1.04107 0.94185 1.70070 1.04344 1.32181 1.52519 0.85764 0.80140 0.78466 0.78882 1.20388 1.21101 1.14875 1.21516 0.94972 0.98957 0.85848 1.19877 0.98619 1.02127 0.87208 1.29223 0.91749 0.92106 0.94182 1.81252 1.10705 1.11619 1.13524 1.21119 1.00909 0.90568 1.06614 1.18532 0.88914 0.86342 1.03010 1.86112 1.20254 1.28888 1.89300 1.23284 0.77140 1.05142 1.01944 0.91548 0.91547 0.86860 0.82227 0.82945 0.89920 0.92300 0.88019 0.85332 0.92337 0.95588 0.92596 0.90084 0.88044 0.84057 0.85348 0.84346 0.86490 0.92116 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.25 10.28 -79.62 -0.82 -8.07 16 3 C 0.07 1.63 6.70 22.57 0.15 1.78 16 4 C -0.17 -2.73 9.04 22.35 0.20 -2.53 16 5 C -0.11 -1.77 9.69 22.27 0.22 -1.56 16 6 C -0.08 -1.52 5.13 -19.86 -0.10 -1.62 16 7 C -0.06 -1.24 4.63 29.85 0.14 -1.10 16 8 C -0.12 -2.61 4.23 29.85 0.13 -2.48 16 9 C 0.50 16.47 7.67 87.65 0.67 17.14 16 10 O -0.59 -25.38 15.56 -3.04 -0.05 -25.43 16 11 N -0.60 -19.32 2.46 -826.14 -2.03 -21.35 16 12 C 0.22 9.25 4.23 85.63 0.36 9.61 16 13 C -0.53 -28.96 9.94 25.60 0.25 -28.71 16 14 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 15 C 0.01 0.36 5.47 84.65 0.46 0.83 16 16 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 17 Si 0.94 41.79 27.47 68.60 1.88 43.67 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16 21 C 0.11 2.48 5.17 86.38 0.45 2.93 16 22 C -0.04 -0.54 6.03 28.79 0.17 -0.37 16 23 C 0.24 4.80 15.43 89.45 1.38 6.19 16 24 N -0.49 -13.03 18.54 20.00 0.37 -12.66 16 25 C -0.17 -3.75 8.69 22.35 0.19 -3.56 16 26 C 0.08 1.85 6.70 22.57 0.15 2.00 16 27 O -0.33 -8.07 10.28 -79.65 -0.82 -8.89 16 28 C 0.02 0.32 9.81 113.37 1.11 1.44 16 29 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 30 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.16 1.65 6.30 -2.91 -0.02 1.63 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.08 1.82 8.04 -2.39 -0.02 1.80 16 35 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 36 H 0.10 1.98 7.40 -2.39 -0.02 1.96 16 37 H 0.13 1.70 7.18 -2.39 -0.02 1.68 16 38 H 0.06 2.16 7.13 -2.39 -0.02 2.14 16 39 H 0.03 1.18 6.85 -2.39 -0.02 1.16 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 42 H 0.10 1.83 6.44 -2.38 -0.02 1.81 16 43 H 0.14 1.20 7.22 -2.39 -0.02 1.19 16 44 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.14 2.78 6.30 -2.91 -0.02 2.77 16 46 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.06 0.94 7.66 -2.39 -0.02 0.93 16 48 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 Total: -1.00 -83.38 406.15 6.82 -76.56 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.92 Total: 13.14 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 7.05 Total: 1.30 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -1.36 Total: -92.29 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.69 Total: -42.39 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.67 kcal Total: -83.38 6.82 -76.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -83.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds