Wall clock time and date at job start Sat Apr 11 2020 07:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00058 * 2 1 4 4 H 1.08000 * 120.00455 * 202.34021 * 3 2 1 5 5 C 1.38821 * 119.99785 * 22.34750 * 3 2 1 6 6 N 1.31615 * 119.99738 * 11.34358 * 5 3 2 7 7 Si 1.86798 * 119.99983 * 191.34707 * 5 3 2 8 8 H 1.48500 * 109.47232 * 59.99452 * 7 5 3 9 9 H 1.48499 * 109.47064 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46758 * 299.99684 * 7 5 3 11 11 C 1.46502 * 120.00522 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47569 * 270.00441 * 11 2 1 13 13 C 1.52998 * 109.47406 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47404 * 180.02562 * 13 12 11 15 15 C 1.46499 * 119.99826 * 270.00318 * 14 13 12 16 16 C 1.34773 * 120.00189 * 89.99592 * 14 13 12 17 17 O 1.21283 * 119.99883 * 0.02562 * 16 14 13 18 18 C 1.50698 * 119.99920 * 180.02562 * 16 14 13 19 19 C 1.53008 * 109.46990 * 180.02562 * 18 16 14 20 20 H 1.08999 * 109.38217 * 55.21298 * 19 18 16 21 21 C 1.52403 * 109.42209 * 295.46645 * 19 18 16 22 22 C 1.52581 * 110.74437 * 169.78489 * 21 19 18 23 23 C 1.53044 * 109.90336 * 70.05536 * 22 21 19 24 24 S 1.81665 * 108.99844 * 296.40776 * 23 22 21 25 25 O 1.42104 * 108.66202 * 168.62414 * 24 23 22 26 26 O 1.42102 * 108.66343 * 299.86606 * 24 23 22 27 27 C 1.53032 * 109.38603 * 175.00044 * 19 18 16 28 28 H 1.08998 * 109.47359 * 274.20540 * 1 2 3 29 29 H 1.08997 * 109.47286 * 34.21144 * 1 2 3 30 30 H 1.08996 * 109.46719 * 154.21053 * 1 2 3 31 31 H 0.97000 * 119.99633 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47484 * 149.99768 * 11 2 1 33 33 H 1.09006 * 109.46437 * 30.00665 * 11 2 1 34 34 H 1.09004 * 109.46843 * 59.99080 * 12 11 2 35 35 H 1.09002 * 109.47177 * 300.00059 * 12 11 2 36 36 H 1.08998 * 109.46887 * 60.00006 * 13 12 11 37 37 H 1.09006 * 109.46859 * 300.00383 * 13 12 11 38 38 H 1.08998 * 109.47117 * 269.99851 * 15 14 13 39 39 H 1.08998 * 109.47084 * 29.99700 * 15 14 13 40 40 H 1.08998 * 109.47163 * 149.99970 * 15 14 13 41 41 H 1.09000 * 109.47389 * 60.00592 * 18 16 14 42 42 H 1.08999 * 109.47388 * 300.00029 * 18 16 14 43 43 H 1.09000 * 109.08666 * 49.51834 * 21 19 18 44 44 H 1.09000 * 109.28990 * 290.17809 * 21 19 18 45 45 H 1.09007 * 109.38659 * 309.95624 * 22 21 19 46 46 H 1.09002 * 109.39148 * 190.16590 * 22 21 19 47 47 H 1.09000 * 109.54335 * 56.26052 * 23 22 21 48 48 H 1.09000 * 109.54864 * 176.54762 * 23 22 21 49 49 H 1.09000 * 109.54980 * 63.95174 * 27 19 18 50 50 H 1.09002 * 109.63087 * 303.71142 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3555 5 6 1.5337 2.3430 0.4571 6 7 0.3841 2.2690 1.0936 7 14 2.3365 4.0048 0.1688 8 1 2.4914 4.2332 -1.2903 9 1 1.4842 5.0736 0.7489 10 1 3.6719 4.0287 0.8181 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 6 3.2171 -3.0351 1.4437 14 7 3.4607 -3.4578 2.8251 15 6 4.6815 -3.0351 3.5159 16 6 2.5618 -4.2354 3.4604 17 8 1.5513 -4.5856 2.8883 18 6 2.8122 -4.6698 4.8815 19 6 1.6478 -5.5383 5.3620 20 1 1.5097 -6.3716 4.6730 21 6 0.3747 -4.7016 5.4033 22 6 -0.8467 -5.5868 5.6328 23 6 -0.8319 -6.1348 7.0617 24 16 0.6251 -7.1994 7.2718 25 8 0.7808 -7.4894 8.6541 26 8 0.5436 -8.2705 6.3414 27 6 1.9609 -6.0804 6.7584 28 1 -0.3634 0.0754 1.0249 29 1 -0.3634 0.8498 -0.5778 30 1 -0.3632 -0.9253 -0.4471 31 1 -0.0465 3.0775 1.4127 32 1 3.1500 -1.1386 -0.5133 33 1 1.6085 -2.0285 -0.5131 34 1 1.5001 -1.8399 1.9570 35 1 3.0416 -0.9499 1.9568 36 1 4.1695 -2.9053 0.9298 37 1 2.6277 -3.7948 0.9302 38 1 5.4685 -3.7695 3.3450 39 1 4.9994 -2.0659 3.1317 40 1 4.4849 -2.9554 4.5851 41 1 2.8980 -3.7908 5.5204 42 1 3.7372 -5.2445 4.9282 43 1 0.2636 -4.1747 4.4556 44 1 0.4481 -3.9741 6.2117 45 1 -0.8295 -6.4172 4.9268 46 1 -1.7526 -5.0004 5.4795 47 1 -0.7838 -5.3070 7.7692 48 1 -1.7369 -6.7159 7.2388 49 1 2.0340 -5.2522 7.4633 50 1 2.9049 -6.6251 6.7366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700194780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:04 Heat of formation + Delta-G solvation = -92.345913 kcal Electronic energy + Delta-G solvation = -29222.355948 eV Core-core repulsion = 25184.541517 eV Total energy + Delta-G solvation = -4037.814432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24815 -37.88612 -37.10902 -36.33106 -36.14672 -35.28849 -33.35070 -32.27241 -30.39058 -28.73795 -27.70700 -26.98681 -25.86028 -25.09904 -23.07761 -22.09954 -20.89195 -20.18143 -19.33873 -18.94045 -17.34262 -17.02419 -16.72293 -16.55279 -16.02144 -15.95010 -15.71523 -15.28218 -14.73839 -14.68458 -14.13222 -13.98895 -13.57252 -13.44364 -13.39129 -13.22966 -13.03346 -12.86843 -12.68968 -12.54415 -12.39648 -12.31528 -12.29781 -11.86042 -11.63234 -11.49727 -11.40873 -11.33545 -11.10886 -10.96504 -10.89092 -10.81691 -10.69484 -10.43960 -10.37889 -10.07814 -9.90021 -9.72174 -9.63304 -8.61568 -8.50975 -6.73119 -5.70952 -3.16473 -0.30553 2.31331 2.62617 3.00790 3.32078 3.36774 3.42665 3.43440 3.59610 4.06500 4.15745 4.30005 4.40719 4.49561 4.50191 4.64587 4.71868 4.92141 4.96324 5.08635 5.14835 5.19395 5.24354 5.31838 5.36739 5.42805 5.43332 5.52587 5.57830 5.62948 5.73739 5.85672 5.95468 6.04608 6.08959 6.12326 6.25358 6.49645 6.66071 6.82861 6.86880 7.13059 7.41015 7.42458 7.75566 7.82206 8.19398 8.41981 9.25714 9.89753 10.39353 11.34053 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002185 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.949445 B =12811.657388 C =13304.884972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.603 5.603 3 C -0.252 4.252 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.156 3.844 12 C -0.148 4.148 13 C 0.114 3.886 14 N -0.613 5.613 15 C 0.076 3.924 16 C 0.509 3.491 17 O -0.533 6.533 18 C -0.132 4.132 19 C -0.061 4.061 20 H 0.101 0.899 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.602 4.602 24 S 2.415 3.585 25 O -0.948 6.948 26 O -0.936 6.936 27 C -0.602 4.602 28 H 0.026 0.974 29 H 0.043 0.957 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.135 0.865 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 -16.879 12.600 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.008 4.008 14 N -0.346 5.346 15 C -0.068 4.068 16 C 0.297 3.703 17 O -0.410 6.410 18 C -0.172 4.172 19 C -0.080 4.080 20 H 0.119 0.881 21 C -0.183 4.183 22 C -0.144 4.144 23 C -0.731 4.731 24 S 2.598 3.402 25 O -0.945 6.945 26 O -0.933 6.933 27 C -0.731 4.731 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.150 0.850 48 H 0.151 0.849 49 H 0.153 0.847 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.249 -17.806 12.649 22.251 hybrid contribution 0.547 2.003 0.028 2.077 sum 4.796 -15.802 12.677 20.818 Atomic orbital electron populations 1.20773 0.82528 0.95502 0.99154 1.43968 1.01968 1.00707 1.85932 1.19164 0.97879 0.85512 1.35623 0.91536 1.25037 0.97758 0.98480 0.98597 1.70066 1.17852 1.27047 1.40475 0.86340 0.78414 0.83885 0.77894 1.21096 1.21664 1.21060 1.20732 0.95610 0.88201 0.92687 1.22597 0.99955 0.94432 1.01999 1.21661 1.00512 0.97913 0.80720 1.47975 1.21179 1.50361 1.15103 1.21814 0.86471 1.00921 0.97547 1.20525 0.83157 0.78241 0.88373 1.90688 1.26636 1.55960 1.67746 1.21732 0.99824 1.01368 0.94324 1.20625 0.95364 0.99619 0.92440 0.88087 1.21916 0.92111 0.98538 1.05776 1.21242 1.00574 1.01021 0.91607 1.30244 1.20256 1.15910 1.06737 1.08041 0.79366 0.77644 0.75100 1.93593 1.85428 1.83417 1.32070 1.93598 1.85628 1.49483 1.64613 1.30362 1.19043 1.16650 1.07061 0.95556 0.93778 0.98511 0.93785 0.94020 0.94452 0.92430 0.92089 0.91041 0.90248 0.92708 0.90480 0.91248 0.88408 0.88589 0.87325 0.91179 0.89548 0.89308 0.84958 0.84933 0.84685 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.19 9.01 59.84 0.54 4.73 16 2 N -0.60 -15.36 2.93 -181.12 -0.53 -15.89 16 3 C -0.25 -6.90 9.67 -15.05 -0.15 -7.05 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.00 -0.02 5.13 -17.43 -0.09 -0.11 16 6 N -0.91 -26.57 10.58 55.49 0.59 -25.98 16 7 Si 0.90 21.70 29.57 -169.99 -5.03 16.67 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 12 C -0.15 -2.72 5.86 -26.74 -0.16 -2.88 16 13 C 0.11 1.61 5.41 -4.04 -0.02 1.59 16 14 N -0.61 -7.44 2.87 -181.58 -0.52 -7.96 16 15 C 0.08 0.64 10.24 59.85 0.61 1.25 16 16 C 0.51 6.35 7.29 -10.99 -0.08 6.27 16 17 O -0.53 -8.48 13.57 5.56 0.08 -8.41 16 18 C -0.13 -1.06 3.72 -27.88 -0.10 -1.16 16 19 C -0.06 -0.49 1.68 -90.90 -0.15 -0.65 16 20 H 0.10 0.95 7.83 -51.93 -0.41 0.54 16 21 C -0.15 -1.28 4.71 -27.25 -0.13 -1.41 16 22 C -0.11 -0.83 5.74 -26.92 -0.15 -0.98 16 23 C -0.60 -3.66 6.35 37.18 0.24 -3.42 16 24 S 2.42 18.98 5.30 -107.50 -0.57 18.41 16 25 O -0.95 -10.48 18.10 -57.82 -1.05 -11.53 16 26 O -0.94 -10.85 17.95 -57.82 -1.04 -11.89 16 27 C -0.60 -3.40 5.62 37.17 0.21 -3.19 16 28 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 30 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.04 0.80 8.03 -51.93 -0.42 0.39 16 33 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.08 1.19 7.42 -51.93 -0.39 0.81 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 41 H 0.10 0.64 7.40 -51.93 -0.38 0.25 16 42 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 43 H 0.11 1.29 5.73 -51.93 -0.30 0.99 16 44 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 45 H 0.09 0.73 8.01 -51.93 -0.42 0.31 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -37.59 403.16 -10.28 -47.86 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.82 Total: -3.51 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 0.54 Total: -3.84 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.46 Total: -49.84 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -2.01 Total: -31.83 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 18.98 SS G_CDS: -0.57 Total: 18.41 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.59 -10.28 -47.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700194780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.483 kcal (2) G-P(sol) polarization free energy of solvation -37.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds