Wall clock time and date at job start Sat Apr 11 2020 07:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47257 * 82.08869 * 3 2 1 5 5 O 1.42905 * 109.47199 * 180.02562 * 4 3 2 6 6 C 1.35708 * 116.99764 * 180.02562 * 5 4 3 7 7 C 1.38998 * 119.90977 * 179.97438 * 6 5 4 8 8 C 1.37705 * 120.08783 * 179.97438 * 7 6 5 9 9 C 1.39730 * 119.91244 * 0.02562 * 8 7 6 10 10 C 1.47598 * 120.08773 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00377 * 20.69911 * 10 9 8 12 12 N 1.34785 * 120.00008 * 200.70675 * 10 9 8 13 13 C 1.46497 * 119.99647 * 6.91974 * 12 10 9 14 14 C 1.46501 * 119.99993 * 186.92338 * 12 10 9 15 15 C 1.52996 * 109.47200 * 269.99769 * 14 12 10 16 16 H 1.09010 * 109.46752 * 305.00368 * 15 14 12 17 17 O 1.42895 * 109.47357 * 64.99726 * 15 14 12 18 18 C 1.52997 * 109.47236 * 185.00209 * 15 14 12 19 19 N 1.46502 * 109.46994 * 179.97438 * 18 15 14 20 20 C 1.36939 * 119.99719 * 179.97438 * 19 18 15 21 21 H 1.08001 * 120.00225 * 359.73039 * 20 19 18 22 22 C 1.38817 * 119.99621 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00188 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99729 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47351 * 90.00177 * 24 22 20 26 26 H 1.48501 * 109.47256 * 210.00243 * 24 22 20 27 27 H 1.48501 * 109.47241 * 330.00170 * 24 22 20 28 28 C 1.39740 * 119.82335 * 0.27560 * 9 8 7 29 29 C 1.37698 * 119.90943 * 359.46539 * 28 9 8 30 30 H 4.44643 * 5.63312 * 179.97438 * 4 1 2 31 31 H 1.09005 * 109.47533 * 322.08458 * 3 2 1 32 32 H 1.08999 * 109.47296 * 202.08720 * 3 2 1 33 33 H 1.08999 * 109.47260 * 59.99817 * 4 3 2 34 34 H 1.09004 * 109.46770 * 299.99397 * 4 3 2 35 35 H 1.07997 * 119.95739 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.04301 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47221 * 266.28485 * 13 12 10 38 38 H 1.08996 * 109.47486 * 26.28898 * 13 12 10 39 39 H 1.09000 * 109.47036 * 146.28867 * 13 12 10 40 40 H 1.08998 * 109.47189 * 149.99685 * 14 12 10 41 41 H 1.09003 * 109.46877 * 29.99984 * 14 12 10 42 42 H 0.96706 * 113.99463 * 60.00195 * 17 15 14 43 43 H 1.08997 * 109.47419 * 60.00013 * 18 15 14 44 44 H 1.08993 * 109.47061 * 299.99904 * 18 15 14 45 45 H 0.96999 * 120.00225 * 0.02562 * 19 18 15 46 46 H 0.96998 * 120.00139 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.04176 * 179.70030 * 28 9 8 48 48 H 1.07997 * 119.95626 * 180.25155 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1977 -1.4288 5 8 4.5852 -0.1976 -1.4287 6 6 5.2013 -0.3633 -2.6264 7 6 6.5895 -0.3724 -2.6964 8 6 7.2185 -0.5408 -3.9097 9 6 6.4594 -0.7021 -5.0717 10 6 7.1296 -0.8835 -6.3742 11 8 8.2831 -1.2655 -6.4164 12 7 6.4629 -0.6255 -7.5168 13 6 5.1288 -0.0224 -7.4662 14 6 7.0724 -0.9482 -8.8093 15 6 7.8769 0.2538 -9.3081 16 1 7.2343 1.1339 -9.3381 17 8 8.9726 0.4941 -8.4230 18 6 8.4099 -0.0366 -10.7125 19 7 9.1798 1.1146 -11.1904 20 6 9.7579 1.0842 -12.4314 21 1 9.6501 0.2098 -13.0561 22 6 10.4869 2.1752 -12.8843 23 7 10.6228 3.2387 -12.1209 24 14 11.2750 2.1340 -14.5774 25 1 10.3206 2.6700 -15.5809 26 1 12.5054 2.9654 -14.5711 27 1 11.6255 0.7338 -14.9263 28 6 5.0640 -0.6861 -4.9980 29 6 4.4426 -0.5225 -3.7801 30 1 -1.0499 -0.0002 0.0000 31 1 3.0098 -0.8099 0.6315 32 1 3.0089 0.9530 0.3864 33 1 2.7924 0.6129 -2.0603 34 1 2.7933 -1.1502 -1.8152 35 1 7.1756 -0.2473 -1.7979 36 1 8.2972 -0.5474 -3.9633 37 1 4.3738 -0.8083 -7.4854 38 1 5.0266 0.5572 -6.5488 39 1 4.9933 0.6327 -8.3268 40 1 6.2905 -1.1865 -9.5304 41 1 7.7346 -1.8063 -8.6946 42 1 9.5870 -0.2488 -8.3470 43 1 7.5742 -0.2198 -11.3878 44 1 9.0524 -0.9166 -10.6825 45 1 9.2806 1.8981 -10.6274 46 1 11.1325 4.0009 -12.4372 47 1 4.4738 -0.8056 -5.8945 48 1 3.3642 -0.5141 -3.7218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734517282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:43 Heat of formation + Delta-G solvation = -4.581033 kcal Electronic energy + Delta-G solvation = -28959.520681 eV Core-core repulsion = 24790.068069 eV Total energy + Delta-G solvation = -4169.452612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.91848 -39.89084 -37.82053 -36.96571 -35.48000 -35.06579 -33.91198 -31.90023 -31.19209 -31.08692 -30.29625 -28.93387 -27.23180 -25.66984 -24.89626 -23.34441 -22.76785 -22.01524 -21.06598 -19.87202 -19.07810 -18.15677 -17.50239 -17.10792 -16.81444 -16.79446 -16.34154 -15.64693 -15.27452 -15.06161 -14.81954 -14.53417 -14.40899 -14.34046 -14.21013 -14.05905 -13.77265 -13.56645 -13.16970 -12.91868 -12.82296 -12.65501 -12.50731 -12.39440 -12.13447 -11.98495 -11.45645 -11.37477 -11.01179 -10.89079 -10.85561 -10.78766 -10.69091 -10.58966 -10.11245 -9.88336 -9.72243 -9.55999 -9.35483 -8.85265 -8.61493 -8.42954 -6.86999 -5.70334 -2.99642 0.69516 1.00526 2.02130 2.24887 2.73359 2.74648 2.93519 3.46494 3.51188 3.53559 3.61801 3.89671 4.24161 4.33308 4.40065 4.42164 4.51256 4.61438 4.66890 4.82008 4.91207 4.95168 5.02777 5.07575 5.17250 5.18945 5.20256 5.30822 5.36244 5.42416 5.49865 5.57933 5.63126 5.69711 5.78102 5.79993 5.89381 6.04351 6.11088 6.28750 6.32899 6.49584 6.57445 6.79984 6.90930 7.00377 7.33991 7.72743 8.19474 8.32152 8.48173 9.59181 10.18047 10.53913 11.52026 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.001609 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.347738 B =17397.678230 C =17643.873391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C -0.009 4.009 4 C 0.063 3.937 5 O -0.312 6.312 6 C 0.152 3.848 7 C -0.160 4.160 8 C -0.018 4.018 9 C -0.167 4.167 10 C 0.564 3.436 11 O -0.526 6.526 12 N -0.607 5.607 13 C 0.064 3.936 14 C 0.087 3.913 15 C 0.086 3.914 16 H 0.094 0.906 17 O -0.544 6.544 18 C 0.125 3.875 19 N -0.725 5.725 20 C -0.243 4.243 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.069 4.069 29 C -0.221 4.221 30 H 0.221 0.779 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.374 0.626 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.389 0.611 46 H 0.255 0.745 47 H 0.153 0.847 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.889 -9.624 24.802 34.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.046 4.046 4 C -0.012 4.012 5 O -0.225 6.225 6 C 0.106 3.894 7 C -0.179 4.179 8 C -0.037 4.037 9 C -0.170 4.170 10 C 0.354 3.646 11 O -0.403 6.403 12 N -0.339 5.339 13 C -0.078 4.078 14 C -0.036 4.036 15 C 0.025 3.975 16 H 0.111 0.889 17 O -0.349 6.349 18 C -0.004 4.004 19 N -0.370 5.370 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.087 4.087 29 C -0.239 4.239 30 H 0.237 0.763 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.222 0.778 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.223 0.777 46 H 0.065 0.935 47 H 0.171 0.829 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.425 -9.278 24.867 34.110 hybrid contribution 0.137 -0.199 -1.080 1.106 sum -21.288 -9.477 23.788 33.299 Atomic orbital electron populations 1.25004 0.95992 1.00612 0.98993 1.22584 0.93940 1.01020 1.01861 1.18430 0.84902 1.05041 0.96183 1.22714 0.78455 1.02370 0.97665 1.85968 1.20971 1.87036 1.28537 1.19228 0.92312 0.93845 0.84038 1.20403 0.91120 1.07378 0.98966 1.21111 1.00803 0.91885 0.89921 1.19870 0.93682 1.09363 0.94096 1.18110 0.85645 0.77482 0.83406 1.90752 1.16166 1.46386 1.86984 1.47540 1.17889 1.62422 1.06069 1.22416 0.83424 0.97871 1.04124 1.22285 0.98393 0.99328 0.83610 1.22460 0.88425 0.97000 0.89568 0.88861 1.86552 1.38056 1.44371 1.65944 1.21240 0.94828 0.92258 0.92039 1.42242 1.61341 1.15669 1.17715 1.19229 1.25444 1.00129 0.92575 0.91299 1.24758 1.01156 0.96536 0.98478 1.69685 1.45596 1.05843 1.36641 0.86189 0.78718 0.77170 0.84087 1.21766 1.21753 1.20794 1.22094 0.93988 0.94130 0.98452 1.21199 1.00177 1.10188 0.92384 0.76266 0.88267 0.88220 0.91203 0.91280 0.84452 0.83896 0.92157 0.89668 0.90774 0.89613 0.89492 0.77842 0.95877 0.96201 0.77651 0.93536 0.82946 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.95 19.25 29.55 0.57 -0.38 16 2 C -0.19 -1.14 13.34 -37.13 -0.50 -1.63 16 3 C -0.01 -0.04 6.07 -29.52 -0.18 -0.22 16 4 C 0.06 0.34 4.69 37.16 0.17 0.52 16 5 O -0.31 -2.47 10.12 -18.83 -0.19 -2.67 16 6 C 0.15 1.35 6.70 -39.02 -0.26 1.09 16 7 C -0.16 -1.52 9.97 -39.49 -0.39 -1.91 16 8 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 9 C -0.17 -1.94 5.57 -104.96 -0.58 -2.52 16 10 C 0.56 7.99 7.22 -12.44 -0.09 7.90 16 11 O -0.53 -9.13 14.72 -9.10 -0.13 -9.26 16 12 N -0.61 -7.44 2.86 -182.79 -0.52 -7.97 16 13 C 0.06 0.54 8.65 59.85 0.52 1.06 16 14 C 0.09 1.15 5.11 -4.04 -0.02 1.13 16 15 C 0.09 1.48 3.29 -26.73 -0.09 1.39 16 16 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 17 O -0.54 -10.73 11.76 -49.63 -0.58 -11.31 16 18 C 0.13 2.55 5.92 -4.04 -0.02 2.52 16 19 N -0.72 -19.18 5.49 -59.91 -0.33 -19.51 16 20 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 24 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 C -0.07 -0.60 7.60 -39.22 -0.30 -0.90 16 29 C -0.22 -1.74 9.01 -39.50 -0.36 -2.10 16 30 H 0.22 0.40 7.80 -54.10 -0.42 -0.03 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.34 7.65 -51.93 -0.40 -0.05 16 34 H 0.07 0.33 7.65 -51.93 -0.40 -0.06 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.62 7.79 -52.49 -0.41 1.21 16 37 H 0.06 0.35 7.00 -51.93 -0.36 -0.01 16 38 H 0.09 0.67 5.25 -51.93 -0.27 0.40 16 39 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.09 1.21 7.53 -51.93 -0.39 0.82 16 42 H 0.37 6.93 8.59 45.56 0.39 7.32 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.39 11.14 7.54 -40.82 -0.31 10.83 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.15 1.01 4.03 -52.49 -0.21 0.80 16 48 H 0.13 0.73 6.28 -52.49 -0.33 0.40 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -36.60 404.53 -8.15 -44.75 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.03 Total: 12.68 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.15 Total: -2.27 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.13 Total: -55.88 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.91 Total: -23.24 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.60 -8.15 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734517282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.164 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds