Wall clock time and date at job start Sat Apr 11 2020 07:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99822 * 2 1 4 4 C 1.53007 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46965 * 54.99515 * 4 3 2 6 6 O 1.42900 * 109.46848 * 295.00137 * 4 3 2 7 7 C 1.52997 * 109.47414 * 175.00050 * 4 3 2 8 8 N 1.46892 * 109.47165 * 186.63703 * 7 4 3 9 9 C 1.46903 * 111.00029 * 287.18973 * 8 7 4 10 10 C 1.46901 * 111.00359 * 163.23439 * 8 7 4 11 11 H 1.08998 * 109.49675 * 60.00072 * 10 8 7 12 12 C 1.53045 * 109.50083 * 180.02562 * 10 8 7 13 13 C 1.53037 * 109.53747 * 181.35230 * 12 10 8 14 14 C 1.53194 * 109.30929 * 298.63079 * 13 12 10 15 15 N 1.46923 * 108.77710 * 54.63588 * 14 13 12 16 16 C 1.34780 * 120.62775 * 126.40895 * 15 14 13 17 17 O 1.21286 * 119.99774 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00351 * 0.02562 * 16 15 14 19 19 S 1.81000 * 109.47321 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99916 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99634 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99863 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00137 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00058 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47128 * 59.99488 * 24 22 20 26 26 H 1.48501 * 109.47343 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46797 * 299.99836 * 24 22 20 28 28 C 1.46924 * 118.74060 * 306.39401 * 15 14 13 29 29 H 1.08994 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47713 * 300.00423 * 1 2 3 31 31 H 1.09010 * 109.47235 * 60.00497 * 1 2 3 32 32 H 1.08995 * 109.47864 * 59.99792 * 3 2 1 33 33 H 1.09008 * 109.47416 * 299.99369 * 3 2 1 34 34 H 0.96705 * 113.99761 * 300.00049 * 6 4 3 35 35 H 1.09001 * 109.47310 * 66.63297 * 7 4 3 36 36 H 1.09001 * 109.47000 * 306.63577 * 7 4 3 37 37 H 1.09004 * 109.46729 * 303.26092 * 9 8 7 38 38 H 1.09003 * 109.47213 * 63.26333 * 9 8 7 39 39 H 1.08999 * 109.47458 * 183.26555 * 9 8 7 40 40 H 1.09005 * 109.45802 * 301.37102 * 12 10 8 41 41 H 1.08994 * 109.45980 * 61.34014 * 12 10 8 42 42 H 1.08995 * 109.49806 * 58.58289 * 13 12 10 43 43 H 1.08999 * 109.49320 * 178.68517 * 13 12 10 44 44 H 1.08999 * 109.58555 * 174.42756 * 14 13 12 45 45 H 1.09004 * 109.58831 * 294.84774 * 14 13 12 46 46 H 1.09007 * 109.46583 * 299.99749 * 18 16 15 47 47 H 1.08998 * 109.47340 * 59.99422 * 18 16 15 48 48 H 0.96997 * 120.00459 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58614 * 293.82038 * 28 15 14 50 50 H 1.08998 * 109.58735 * 173.39527 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5685 -0.8426 6 8 3.9658 0.5793 1.2201 7 6 4.1572 2.5770 -0.1264 8 7 5.6119 2.4509 -0.2867 9 6 6.2483 2.0536 0.9763 10 6 6.1950 3.6974 -0.8007 11 1 5.9896 4.5097 -0.1035 12 6 7.7082 3.5281 -0.9549 13 6 8.3210 4.8369 -1.4583 14 6 7.7304 5.1781 -2.8301 15 7 6.2653 5.2001 -2.7220 16 6 5.5630 6.2770 -3.1264 17 8 4.3538 6.2827 -3.0324 18 6 6.2800 7.4736 -3.6965 19 16 5.0714 8.7445 -4.1440 20 6 6.1526 9.9903 -4.7636 21 1 7.2193 9.8215 -4.7770 22 6 5.6334 11.1883 -5.2344 23 7 4.3333 11.3936 -5.2185 24 14 6.7796 12.5087 -5.8918 25 1 7.5440 11.9709 -7.0457 26 1 5.9826 13.6824 -6.3305 27 1 7.7233 12.9223 -4.8224 28 6 5.5803 4.0257 -2.1649 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.7190 1.0746 2.0132 35 1 3.9394 3.1547 0.7719 36 1 3.7386 3.0847 -0.9953 37 1 5.9966 2.7759 1.7529 38 1 5.8906 1.0663 1.2687 39 1 7.3299 2.0239 0.8447 40 1 8.1449 3.2701 0.0099 41 1 7.9134 2.7322 -1.6708 42 1 8.0949 5.6386 -0.7553 43 1 9.4015 4.7228 -1.5457 44 1 8.0880 6.1573 -3.1486 45 1 8.0319 4.4229 -3.5559 46 1 6.9690 7.8729 -2.9521 47 1 6.8375 7.1743 -4.5840 48 1 3.9704 12.2307 -5.5478 49 1 5.7065 3.1765 -2.8364 50 1 4.5193 4.2445 -2.0446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752987609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:56 Heat of formation + Delta-G solvation = -118.844846 kcal Electronic energy + Delta-G solvation = -28818.099253 eV Core-core repulsion = 24779.135742 eV Total energy + Delta-G solvation = -4038.963511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.30678 -39.16261 -38.04763 -36.94106 -35.52436 -32.58341 -32.44263 -31.18414 -30.82434 -28.71112 -27.78374 -26.30387 -25.54047 -24.78960 -24.19536 -22.55142 -21.55546 -20.44763 -19.12149 -17.76251 -17.27187 -16.98179 -16.84377 -16.41339 -15.92821 -15.85520 -15.21781 -15.14451 -14.97512 -14.82164 -14.77852 -14.40307 -14.04514 -13.78105 -13.69202 -13.53298 -13.16654 -12.85355 -12.74996 -12.55680 -12.44249 -12.08456 -12.01331 -11.92316 -11.85198 -11.59455 -11.16494 -11.09323 -11.06515 -11.05589 -10.97585 -10.78170 -10.55324 -10.13425 -10.01480 -9.82971 -9.39780 -9.07831 -8.61981 -8.52611 -8.25391 -6.52490 -6.23393 -3.94313 2.83033 3.01650 3.13400 3.21901 3.24904 3.27765 3.55065 3.82006 4.06333 4.18464 4.44161 4.60573 4.65714 4.69008 4.70362 4.80970 4.87145 4.92257 4.96823 4.99652 5.03724 5.11621 5.11931 5.13051 5.18130 5.31036 5.33615 5.34998 5.39612 5.45506 5.57188 5.67171 5.68850 5.73377 5.74480 5.81635 5.85836 5.89149 5.99218 6.09313 6.11102 6.51805 6.71902 6.79407 6.85173 7.30969 7.53283 7.57501 8.33049 8.52421 9.21720 10.83975 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.002204 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.944498 B =12699.934935 C =14291.274826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.028 3.972 4 C 0.118 3.882 5 H 0.116 0.884 6 O -0.547 6.547 7 C 0.018 3.982 8 N -0.526 5.526 9 C 0.008 3.992 10 C 0.069 3.931 11 H 0.045 0.955 12 C -0.113 4.113 13 C -0.135 4.135 14 C 0.106 3.894 15 N -0.619 5.619 16 C 0.536 3.464 17 O -0.519 6.519 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.120 3.880 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.368 0.632 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.019 0.981 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.269 0.731 49 H 0.073 0.927 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -21.575 12.938 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C -0.049 4.049 4 C 0.058 3.942 5 H 0.134 0.866 6 O -0.352 6.352 7 C -0.110 4.110 8 N -0.250 5.250 9 C -0.139 4.139 10 C -0.040 4.040 11 H 0.063 0.937 12 C -0.150 4.150 13 C -0.173 4.173 14 C -0.017 4.017 15 N -0.355 5.355 16 C 0.324 3.676 17 O -0.394 6.394 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.004 4.004 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.215 0.785 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.038 0.962 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.322 -22.405 12.264 25.576 hybrid contribution 1.528 2.288 0.445 2.787 sum 2.850 -20.117 12.709 23.966 Atomic orbital electron populations 1.22777 0.80993 1.02851 1.00074 1.87935 1.19616 1.27063 1.95395 1.23274 0.94973 0.85489 1.01209 1.21920 0.89590 0.93928 0.88714 0.86620 1.86636 1.80061 1.53213 1.15292 1.22842 0.89312 0.96630 1.02260 1.61864 1.02690 1.31419 1.29077 1.22822 0.99976 1.02266 0.88846 1.22016 0.95210 0.90458 0.96291 0.93709 1.21646 0.93567 0.97903 1.01929 1.21937 1.00294 0.97850 0.97266 1.21754 0.79648 1.03227 0.97062 1.48063 1.07010 1.16332 1.64101 1.20348 0.87570 0.82855 0.76821 1.90679 1.13912 1.80737 1.54023 1.23550 1.04886 0.98424 1.03181 1.85390 1.08115 1.09171 1.80815 1.22814 0.94718 1.02481 1.48342 0.90979 1.24991 0.95562 0.97766 0.95252 1.70006 1.10972 1.25463 1.43863 0.86226 0.80025 0.80033 0.79231 1.19909 1.20807 1.19937 1.21521 0.97867 0.87843 0.93129 0.89521 0.94133 0.93897 0.93056 0.91974 0.78503 0.94013 0.88997 0.96241 0.88385 0.91347 0.91405 0.90747 0.91402 0.90298 0.89119 0.91282 0.89277 0.89195 0.92121 0.90852 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.80 10.67 -40.08 -0.43 -4.23 16 3 C 0.03 0.23 5.57 37.16 0.21 0.44 16 4 C 0.12 1.00 3.44 -26.73 -0.09 0.91 16 5 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 6 O -0.55 -4.67 10.34 -40.08 -0.41 -5.09 16 7 C 0.02 0.16 4.65 -3.83 -0.02 0.14 16 8 N -0.53 -4.91 4.58 -234.74 -1.08 -5.98 16 9 C 0.01 0.07 8.82 60.07 0.53 0.60 16 10 C 0.07 0.72 2.09 -67.59 -0.14 0.58 16 11 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 12 C -0.11 -0.98 4.87 -26.69 -0.13 -1.11 16 13 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 14 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 15 N -0.62 -8.78 2.97 -172.77 -0.51 -9.29 16 16 C 0.54 10.14 7.72 -10.98 -0.08 10.06 16 17 O -0.52 -11.72 15.28 5.55 0.08 -11.63 16 18 C -0.15 -3.02 4.50 36.00 0.16 -2.86 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 24 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 C 0.12 1.49 5.37 -3.71 -0.02 1.47 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.37 1.99 9.05 45.56 0.41 2.41 16 35 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 36 H 0.09 0.88 5.72 -51.93 -0.30 0.58 16 37 H 0.02 0.15 8.04 -51.93 -0.42 -0.26 16 38 H 0.10 0.82 5.57 -51.93 -0.29 0.53 16 39 H 0.07 0.53 5.81 -51.93 -0.30 0.22 16 40 H 0.07 0.53 6.12 -51.93 -0.32 0.22 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 47 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.28 5.25 -51.93 -0.27 1.01 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -34.95 402.88 -8.87 -43.82 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.64 Total: 0.83 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 1.54 Total: -1.54 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: -0.86 Total: -40.59 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.76 Total: -20.95 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.95 -8.87 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752987609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.023 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds