Wall clock time and date at job start Sat Apr 11 2020 07:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 119.99893 * 2 1 4 4 H 1.07999 * 119.99567 * 202.32973 * 3 2 1 5 5 C 1.38806 * 120.00108 * 22.33242 * 3 2 1 6 6 N 1.31617 * 120.00184 * 11.37072 * 5 3 2 7 7 Si 1.86796 * 120.00017 * 191.37391 * 5 3 2 8 8 H 1.48498 * 109.47439 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47066 * 119.99781 * 7 5 3 10 10 H 1.48500 * 109.47101 * 239.99810 * 7 5 3 11 11 C 1.46503 * 120.00256 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47070 * 270.00072 * 11 2 1 13 13 H 1.08997 * 109.47087 * 59.99222 * 12 11 2 14 14 O 1.42907 * 109.46714 * 299.99486 * 12 11 2 15 15 C 1.53003 * 109.47113 * 179.97438 * 12 11 2 16 16 N 1.46497 * 109.46887 * 184.99757 * 15 12 11 17 17 C 1.46504 * 120.00122 * 89.99837 * 16 15 12 18 18 C 1.34776 * 120.00023 * 269.72082 * 16 15 12 19 19 O 1.21283 * 119.99976 * 0.27596 * 18 16 15 20 20 C 1.50700 * 119.99913 * 180.27899 * 18 16 15 21 21 C 1.50703 * 109.46783 * 179.97438 * 20 18 16 22 22 C 1.33990 * 126.90966 * 265.02113 * 21 20 18 23 23 O 1.34450 * 110.15715 * 179.97438 * 22 21 20 24 24 C 1.34806 * 110.88903 * 0.02562 * 23 22 21 25 25 C 1.38937 * 133.49092 * 179.97438 * 24 23 22 26 26 C 1.37854 * 119.81623 * 179.97438 * 25 24 23 27 27 C 1.38740 * 120.68279 * 0.02562 * 26 25 24 28 28 C 1.36743 * 120.41947 * 359.97234 * 27 26 25 29 29 C 1.39401 * 119.71410 * 359.76547 * 28 27 26 30 30 H 1.09007 * 109.47153 * 274.20911 * 1 2 3 31 31 H 1.09001 * 109.47231 * 34.20581 * 1 2 3 32 32 H 1.08997 * 109.47370 * 154.20805 * 1 2 3 33 33 H 0.97000 * 120.00678 * 180.02562 * 6 5 3 34 34 H 1.08992 * 109.47192 * 149.99372 * 11 2 1 35 35 H 1.09000 * 109.46888 * 29.99476 * 11 2 1 36 36 H 0.96693 * 113.99903 * 300.00511 * 14 12 11 37 37 H 1.08998 * 109.47064 * 64.99330 * 15 12 11 38 38 H 1.09005 * 109.46584 * 304.99561 * 15 12 11 39 39 H 1.08998 * 109.46781 * 269.72420 * 17 16 15 40 40 H 1.09000 * 109.46713 * 29.72037 * 17 16 15 41 41 H 1.08996 * 109.47083 * 149.72202 * 17 16 15 42 42 H 1.08997 * 109.46936 * 299.99534 * 20 18 16 43 43 H 1.08993 * 109.47124 * 60.00169 * 20 18 16 44 44 H 1.08000 * 124.92197 * 359.95949 * 22 21 20 45 45 H 1.08004 * 120.09374 * 359.97438 * 25 24 23 46 46 H 1.07992 * 119.65930 * 179.97438 * 26 25 24 47 47 H 1.08003 * 119.78860 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.14126 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2210 -0.3554 5 6 1.5337 2.3430 0.4568 6 7 0.3841 2.2692 1.0935 7 14 2.3362 4.0048 0.1677 8 1 3.6138 3.8168 -0.5654 9 1 1.4260 4.8612 -0.6346 10 1 2.6069 4.6576 1.4737 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 1.5001 -1.8415 1.9555 14 8 3.2249 -0.7153 2.1158 15 6 3.2170 -3.0364 1.4412 16 7 3.3569 -3.5199 2.8169 17 6 2.3320 -4.3932 3.3942 18 6 4.4313 -3.1660 3.5497 19 8 5.2798 -2.4431 3.0718 20 6 4.5783 -3.6686 4.9628 21 6 5.8555 -3.1321 5.5563 22 6 7.0457 -3.7464 5.5935 23 8 7.9530 -2.9621 6.2012 24 6 7.3975 -1.7972 6.5907 25 6 7.8899 -0.6742 7.2439 26 6 7.0514 0.3875 7.5086 27 6 5.7174 0.3476 7.1297 28 6 5.2130 -0.7482 6.4858 29 6 6.0470 -1.8292 6.2048 30 1 -0.3634 0.0754 1.0250 31 1 -0.3634 0.8499 -0.5777 32 1 -0.3634 -0.9252 -0.4471 33 1 -0.0465 3.0777 1.4124 34 1 3.1498 -1.1382 -0.5144 35 1 1.6084 -2.0282 -0.5147 36 1 4.0873 -0.5467 1.7122 37 1 4.2052 -2.8856 1.0067 38 1 2.6692 -3.7715 0.8515 39 1 1.5705 -3.7857 3.8832 40 1 1.8718 -4.9854 2.6033 41 1 2.7913 -5.0582 4.1256 42 1 3.7304 -3.3307 5.5586 43 1 4.6092 -4.7580 4.9595 44 1 7.2470 -4.7292 5.1935 45 1 8.9268 -0.6331 7.5435 46 1 7.4368 1.2590 8.0168 47 1 5.0732 1.1874 7.3447 48 1 4.1739 -0.7743 6.1926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755806245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:00 Heat of formation + Delta-G solvation = -18.848707 kcal Electronic energy + Delta-G solvation = -30898.108257 eV Core-core repulsion = 26728.036953 eV Total energy + Delta-G solvation = -4170.071305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48744 -39.74539 -37.84437 -37.11029 -35.25424 -34.37757 -33.92340 -31.28310 -30.67709 -30.13630 -29.45817 -27.91117 -26.91605 -25.83801 -24.99106 -23.33295 -22.32466 -22.07606 -20.48055 -20.32194 -18.98110 -17.42021 -17.20525 -16.97853 -16.68718 -16.08592 -16.00269 -15.77725 -15.67619 -14.84888 -14.64274 -14.30441 -14.16930 -13.90153 -13.79029 -13.44943 -13.22359 -13.11315 -12.90902 -12.79292 -12.54550 -12.45269 -12.27188 -12.10618 -11.76096 -11.65041 -11.37056 -11.04922 -10.89438 -10.79383 -10.57794 -10.38534 -10.23843 -10.11199 -9.90556 -9.79693 -9.59814 -9.34561 -8.62764 -8.45259 -8.28216 -8.17229 -6.62347 -5.59929 -3.03251 0.91003 1.37561 2.22383 2.75221 2.82541 3.18897 3.46281 3.53299 3.55028 3.74148 4.38074 4.47262 4.60659 4.65867 4.75583 4.93765 4.96974 5.05629 5.18997 5.22939 5.26617 5.33693 5.37740 5.40701 5.44262 5.56414 5.58710 5.60641 5.65746 5.79585 5.88345 5.97969 6.09010 6.16400 6.19654 6.24931 6.38689 6.48902 6.52037 6.62055 6.65514 6.77258 6.88882 7.13237 7.42862 7.50546 7.78348 7.91274 8.38640 8.49631 8.70630 9.35177 9.97458 10.45388 11.46518 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003356 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.234906 B = 8341.569400 C =10311.713474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.592 5.592 3 C -0.237 4.237 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.910 5.910 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.123 3.877 12 C 0.074 3.926 13 H 0.082 0.918 14 O -0.530 6.530 15 C 0.081 3.919 16 N -0.612 5.612 17 C 0.077 3.923 18 C 0.517 3.483 19 O -0.521 6.521 20 C -0.067 4.067 21 C -0.152 4.152 22 C 0.012 3.988 23 O -0.194 6.194 24 C 0.049 3.951 25 C -0.112 4.112 26 C -0.095 4.095 27 C -0.135 4.135 28 C -0.060 4.060 29 C -0.111 4.111 30 H 0.027 0.973 31 H 0.045 0.955 32 H -0.006 1.006 33 H 0.249 0.751 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.364 0.636 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.204 0.796 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.129 0.871 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 -16.605 11.523 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.314 5.314 3 C -0.367 4.367 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.205 1.205 9 H -0.219 1.219 10 H -0.219 1.219 11 C -0.006 4.006 12 C 0.009 3.991 13 H 0.100 0.900 14 O -0.333 6.333 15 C -0.042 4.042 16 N -0.346 5.346 17 C -0.066 4.066 18 C 0.304 3.696 19 O -0.396 6.396 20 C -0.107 4.107 21 C -0.154 4.154 22 C -0.053 4.053 23 O -0.096 6.096 24 C 0.002 3.998 25 C -0.130 4.130 26 C -0.113 4.113 27 C -0.153 4.153 28 C -0.078 4.078 29 C -0.112 4.112 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.012 0.988 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.210 0.790 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.221 0.779 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.866 -16.107 11.734 21.811 hybrid contribution 0.433 0.797 -0.478 1.025 sum 9.299 -15.310 11.256 21.156 Atomic orbital electron populations 1.20794 0.82561 0.95394 0.99219 1.43870 1.01739 1.00429 1.85328 1.19120 0.97663 0.85033 1.34899 0.91628 1.24948 0.97741 0.98315 0.98470 1.70065 1.18001 1.26558 1.40935 0.86218 0.78572 0.84652 0.77306 1.20461 1.21895 1.21850 1.21479 0.96434 0.89319 0.93388 1.23092 0.93733 0.85216 0.97011 0.89986 1.86615 1.32357 1.59049 1.55233 1.22480 1.02287 0.97883 0.81593 1.47754 1.22287 1.49983 1.14582 1.21803 0.91722 0.93773 0.99314 1.20326 0.81263 0.80785 0.87205 1.90699 1.41371 1.35540 1.71989 1.20006 0.95770 1.01222 0.93726 1.20422 0.95709 0.94323 1.04960 1.23584 0.86596 0.96705 0.98431 1.83975 1.38118 1.24516 1.62964 1.19582 0.91739 0.87566 1.00902 1.19879 1.00594 0.90593 1.01972 1.20917 0.93437 0.97385 0.99527 1.20810 0.95775 0.98470 1.00262 1.20345 0.99707 0.91588 0.96162 1.19694 0.94019 0.95459 1.02035 0.95495 0.93586 0.98794 0.94115 0.93628 0.94006 0.79010 0.90100 0.90549 0.92433 0.91052 0.91364 0.87967 0.88206 0.77940 0.85312 0.84935 0.85290 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 9.01 59.84 0.54 4.67 16 2 N -0.59 -15.08 2.87 -181.12 -0.52 -15.60 16 3 C -0.24 -6.69 9.02 -15.06 -0.14 -6.82 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -27.45 10.59 55.49 0.59 -26.86 16 7 Si 0.90 22.90 29.57 -169.99 -5.03 17.88 16 8 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 10 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 11 C 0.12 2.47 5.43 -4.04 -0.02 2.45 16 12 C 0.07 1.38 3.48 -26.73 -0.09 1.28 16 13 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 14 O -0.53 -11.94 11.50 -42.53 -0.49 -12.43 16 15 C 0.08 1.16 5.16 -4.04 -0.02 1.14 16 16 N -0.61 -7.94 2.86 -181.57 -0.52 -8.46 16 17 C 0.08 0.68 10.29 59.85 0.62 1.30 16 18 C 0.52 7.51 7.30 -10.99 -0.08 7.43 16 19 O -0.52 -9.75 14.61 -1.74 -0.03 -9.78 16 20 C -0.07 -0.73 4.80 -29.03 -0.14 -0.87 16 21 C -0.15 -1.96 4.85 -102.66 -0.50 -2.46 16 22 C 0.01 0.13 11.89 29.24 0.35 0.48 16 23 O -0.19 -2.59 10.58 3.92 0.04 -2.55 16 24 C 0.05 0.69 7.42 -38.48 -0.29 0.40 16 25 C -0.11 -1.34 10.07 -39.46 -0.40 -1.74 16 26 C -0.09 -1.06 10.01 -39.54 -0.40 -1.46 16 27 C -0.14 -1.70 9.98 -39.94 -0.40 -2.10 16 28 C -0.06 -0.86 10.05 -39.69 -0.40 -1.26 16 29 C -0.11 -1.63 6.38 -105.16 -0.67 -2.30 16 30 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 31 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 32 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 35 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 36 H 0.36 7.95 8.76 45.56 0.40 8.34 16 37 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 41 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 42 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 43 H 0.10 0.71 7.40 -51.93 -0.38 0.32 16 44 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 48 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -36.94 399.13 -8.50 -45.44 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.44 Total: 6.19 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.12 Total: 0.15 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.45 Total: -50.92 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.47 Total: -24.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.03 Total: 17.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.94 -8.50 -45.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.594 kcal (2) G-P(sol) polarization free energy of solvation -36.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds