Wall clock time and date at job start Sat Apr 11 2020 07:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 119.99893 * 2 1 4 4 H 1.07999 * 119.99567 * 202.32973 * 3 2 1 5 5 C 1.38806 * 120.00108 * 22.33242 * 3 2 1 6 6 N 1.31617 * 120.00184 * 11.37072 * 5 3 2 7 7 Si 1.86796 * 120.00017 * 191.37391 * 5 3 2 8 8 H 1.48498 * 109.47439 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47066 * 119.99781 * 7 5 3 10 10 H 1.48500 * 109.47101 * 239.99810 * 7 5 3 11 11 C 1.46503 * 120.00256 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47070 * 270.00072 * 11 2 1 13 13 H 1.08997 * 109.47087 * 59.99222 * 12 11 2 14 14 O 1.42907 * 109.46714 * 299.99486 * 12 11 2 15 15 C 1.53003 * 109.47113 * 179.97438 * 12 11 2 16 16 N 1.46497 * 109.46887 * 184.99757 * 15 12 11 17 17 C 1.46504 * 120.00122 * 89.99837 * 16 15 12 18 18 C 1.34776 * 120.00023 * 269.72082 * 16 15 12 19 19 O 1.21283 * 119.99976 * 0.27596 * 18 16 15 20 20 C 1.50700 * 119.99913 * 180.27899 * 18 16 15 21 21 C 1.50703 * 109.46783 * 179.97438 * 20 18 16 22 22 C 1.33990 * 126.90966 * 265.02113 * 21 20 18 23 23 O 1.34450 * 110.15715 * 179.97438 * 22 21 20 24 24 C 1.34806 * 110.88903 * 0.02562 * 23 22 21 25 25 C 1.38937 * 133.49092 * 179.97438 * 24 23 22 26 26 C 1.37854 * 119.81623 * 179.97438 * 25 24 23 27 27 C 1.38740 * 120.68279 * 0.02562 * 26 25 24 28 28 C 1.36743 * 120.41947 * 359.97234 * 27 26 25 29 29 C 1.39401 * 119.71410 * 359.76547 * 28 27 26 30 30 H 1.09007 * 109.47153 * 274.20911 * 1 2 3 31 31 H 1.09001 * 109.47231 * 34.20581 * 1 2 3 32 32 H 1.08997 * 109.47370 * 154.20805 * 1 2 3 33 33 H 0.97000 * 120.00678 * 180.02562 * 6 5 3 34 34 H 1.08992 * 109.47192 * 149.99372 * 11 2 1 35 35 H 1.09000 * 109.46888 * 29.99476 * 11 2 1 36 36 H 0.96693 * 113.99903 * 300.00511 * 14 12 11 37 37 H 1.08998 * 109.47064 * 64.99330 * 15 12 11 38 38 H 1.09005 * 109.46584 * 304.99561 * 15 12 11 39 39 H 1.08998 * 109.46781 * 269.72420 * 17 16 15 40 40 H 1.09000 * 109.46713 * 29.72037 * 17 16 15 41 41 H 1.08996 * 109.47083 * 149.72202 * 17 16 15 42 42 H 1.08997 * 109.46936 * 299.99534 * 20 18 16 43 43 H 1.08993 * 109.47124 * 60.00169 * 20 18 16 44 44 H 1.08000 * 124.92197 * 359.95949 * 22 21 20 45 45 H 1.08004 * 120.09374 * 359.97438 * 25 24 23 46 46 H 1.07992 * 119.65930 * 179.97438 * 26 25 24 47 47 H 1.08003 * 119.78860 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.14126 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2210 -0.3554 5 6 1.5337 2.3430 0.4568 6 7 0.3841 2.2692 1.0935 7 14 2.3362 4.0048 0.1677 8 1 3.6138 3.8168 -0.5654 9 1 1.4260 4.8612 -0.6346 10 1 2.6069 4.6576 1.4737 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 1.5001 -1.8415 1.9555 14 8 3.2249 -0.7153 2.1158 15 6 3.2170 -3.0364 1.4412 16 7 3.3569 -3.5199 2.8169 17 6 2.3320 -4.3932 3.3942 18 6 4.4313 -3.1660 3.5497 19 8 5.2798 -2.4431 3.0718 20 6 4.5783 -3.6686 4.9628 21 6 5.8555 -3.1321 5.5563 22 6 7.0457 -3.7464 5.5935 23 8 7.9530 -2.9621 6.2012 24 6 7.3975 -1.7972 6.5907 25 6 7.8899 -0.6742 7.2439 26 6 7.0514 0.3875 7.5086 27 6 5.7174 0.3476 7.1297 28 6 5.2130 -0.7482 6.4858 29 6 6.0470 -1.8292 6.2048 30 1 -0.3634 0.0754 1.0250 31 1 -0.3634 0.8499 -0.5777 32 1 -0.3634 -0.9252 -0.4471 33 1 -0.0465 3.0777 1.4124 34 1 3.1498 -1.1382 -0.5144 35 1 1.6084 -2.0282 -0.5147 36 1 4.0873 -0.5467 1.7122 37 1 4.2052 -2.8856 1.0067 38 1 2.6692 -3.7715 0.8515 39 1 1.5705 -3.7857 3.8832 40 1 1.8718 -4.9854 2.6033 41 1 2.7913 -5.0582 4.1256 42 1 3.7304 -3.3307 5.5586 43 1 4.6092 -4.7580 4.9595 44 1 7.2470 -4.7292 5.1935 45 1 8.9268 -0.6331 7.5435 46 1 7.4368 1.2590 8.0168 47 1 5.0732 1.1874 7.3447 48 1 4.1739 -0.7743 6.1926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755806245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:59 Heat of formation + Delta-G solvation = -43.721296 kcal Electronic energy + Delta-G solvation = -30899.186814 eV Core-core repulsion = 26728.036953 eV Total energy + Delta-G solvation = -4171.149861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.41682 -40.86083 -38.78425 -38.70938 -36.74103 -35.95821 -34.89212 -33.27770 -31.73785 -31.28410 -30.65501 -28.99271 -28.03116 -27.80286 -26.38362 -24.29141 -23.74858 -23.24676 -22.11392 -21.47899 -20.00940 -18.81374 -18.31131 -18.14685 -17.94844 -17.52859 -17.02389 -16.85787 -16.66085 -16.54088 -16.21960 -15.90503 -15.38181 -15.17272 -15.06249 -14.76717 -14.68140 -14.25276 -14.16351 -13.77253 -13.69844 -13.59779 -13.24702 -13.17399 -13.06149 -13.01727 -12.83363 -12.59206 -12.52284 -12.45971 -12.16951 -12.03225 -11.85991 -11.82635 -11.80070 -11.12912 -11.02410 -10.65329 -10.55586 -9.61149 -9.50615 -9.10121 -8.67726 -7.78613 -5.22646 -0.02317 0.38231 1.30293 1.42288 1.44520 1.53434 1.76259 1.87453 2.23005 2.52839 2.75888 3.37053 3.50284 3.58366 3.59529 3.75424 3.88157 3.92732 4.09241 4.12250 4.15153 4.30956 4.36819 4.39672 4.44367 4.53843 4.55708 4.57633 4.61882 4.65723 4.73021 4.79882 4.85506 4.94651 4.97916 5.00013 5.24904 5.31061 5.33842 5.34516 5.46493 5.52140 5.59489 5.65728 5.68658 5.74710 6.18909 6.36598 6.50625 7.01843 7.21082 7.33737 7.91941 8.33165 9.26189 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003356 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.234906 B = 8341.569400 C =10311.713474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.236 4.236 4 H 0.064 0.936 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.959 3.041 8 H -0.269 1.269 9 H -0.289 1.289 10 H -0.299 1.299 11 C 0.120 3.880 12 C 0.080 3.920 13 H 0.065 0.935 14 O -0.558 6.558 15 C 0.094 3.906 16 N -0.613 5.613 17 C 0.069 3.931 18 C 0.508 3.492 19 O -0.572 6.572 20 C -0.058 4.058 21 C -0.179 4.179 22 C 0.021 3.979 23 O -0.203 6.203 24 C 0.023 3.977 25 C -0.113 4.113 26 C -0.095 4.095 27 C -0.142 4.142 28 C -0.090 4.090 29 C -0.137 4.137 30 H -0.004 1.004 31 H 0.017 0.983 32 H 0.035 0.965 33 H 0.243 0.757 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.362 0.638 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.145 0.855 44 H 0.247 0.753 45 H 0.155 0.845 46 H 0.167 0.833 47 H 0.141 0.859 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 -19.019 11.568 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.333 5.333 3 C -0.367 4.367 4 H 0.082 0.918 5 C -0.249 4.249 6 N -0.589 5.589 7 Si 0.789 3.211 8 H -0.193 1.193 9 H -0.216 1.216 10 H -0.227 1.227 11 C -0.008 4.008 12 C 0.017 3.983 13 H 0.083 0.917 14 O -0.362 6.362 15 C -0.030 4.030 16 N -0.345 5.345 17 C -0.072 4.072 18 C 0.297 3.703 19 O -0.451 6.451 20 C -0.097 4.097 21 C -0.181 4.181 22 C -0.043 4.043 23 O -0.104 6.104 24 C -0.024 4.024 25 C -0.132 4.132 26 C -0.113 4.113 27 C -0.160 4.160 28 C -0.108 4.108 29 C -0.138 4.138 30 H 0.015 0.985 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.208 0.792 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.163 0.837 44 H 0.263 0.737 45 H 0.173 0.827 46 H 0.184 0.816 47 H 0.159 0.841 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.877 -18.583 11.777 24.116 hybrid contribution 0.121 1.462 -0.507 1.553 sum 9.998 -17.121 11.269 22.805 Atomic orbital electron populations 1.20534 0.82684 0.96177 0.97231 1.44092 1.02068 1.01588 1.85508 1.19375 0.97496 0.86395 1.33446 0.91790 1.25637 0.98578 1.01430 0.99209 1.70231 1.19361 1.26738 1.42557 0.85305 0.78138 0.80956 0.76698 1.19324 1.21610 1.22700 1.21677 0.96551 0.87936 0.94590 1.22974 0.93319 0.86864 0.95165 0.91650 1.86585 1.32533 1.60800 1.56270 1.22189 1.01348 0.96241 0.83261 1.47866 1.22731 1.49920 1.14004 1.22107 0.90812 0.93564 1.00745 1.21038 0.80868 0.79933 0.88417 1.90673 1.43369 1.37811 1.73250 1.20047 0.95083 1.03679 0.90907 1.20743 0.97271 0.94052 1.06010 1.24415 0.85700 0.97561 0.96624 1.83969 1.38745 1.24507 1.63208 1.19985 0.91888 0.88532 1.02016 1.20318 1.01966 0.89953 1.00923 1.21304 0.92636 0.98308 0.99048 1.21106 0.96933 0.98263 0.99707 1.20423 0.99423 0.92919 0.98084 1.20088 0.94628 0.96456 1.02615 0.98543 0.96431 0.94632 0.94812 0.93352 0.90561 0.79192 0.91187 0.86741 0.93382 0.88843 0.88051 0.87519 0.83691 0.73745 0.82741 0.81595 0.84075 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 9.01 127.77 1.15 10.13 16 2 N -0.61 -31.02 2.87 -726.95 -2.09 -33.11 16 3 C -0.24 -13.46 9.02 84.03 0.76 -12.71 16 4 H 0.06 3.60 7.84 -2.91 -0.02 3.57 16 5 C -0.05 -3.21 5.13 84.86 0.44 -2.78 16 6 N -0.94 -58.44 10.59 21.65 0.23 -58.21 16 7 Si 0.96 48.04 29.57 68.60 2.03 50.07 16 8 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 9 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 10 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 11 C 0.12 4.65 5.43 86.38 0.47 5.11 16 12 C 0.08 2.94 3.48 30.60 0.11 3.04 16 13 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 14 O -0.56 -25.85 11.50 -142.00 -1.63 -27.49 16 15 C 0.09 2.50 5.16 86.38 0.45 2.94 16 16 N -0.61 -14.66 2.86 -846.75 -2.42 -17.08 16 17 C 0.07 0.99 10.29 127.77 1.31 2.31 16 18 C 0.51 14.26 7.30 87.66 0.64 14.90 16 19 O -0.57 -21.68 14.61 3.94 0.06 -21.62 16 20 C -0.06 -1.15 4.80 29.10 0.14 -1.01 16 21 C -0.18 -4.47 4.85 -18.59 -0.09 -4.56 16 22 C 0.02 0.45 11.89 66.85 0.79 1.24 16 23 O -0.20 -5.23 10.58 -8.90 -0.09 -5.33 16 24 C 0.02 0.63 7.42 22.99 0.17 0.81 16 25 C -0.11 -2.62 10.07 22.35 0.23 -2.40 16 26 C -0.10 -2.06 10.01 22.30 0.22 -1.83 16 27 C -0.14 -3.66 9.98 22.04 0.22 -3.44 16 28 C -0.09 -2.74 10.05 22.20 0.22 -2.52 16 29 C -0.14 -4.12 6.38 -20.21 -0.13 -4.25 16 30 H 0.00 -0.21 7.42 -2.38 -0.02 -0.23 16 31 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 32 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 33 H 0.24 14.73 8.31 -92.71 -0.77 13.95 16 34 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 35 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 36 H 0.36 16.49 8.76 -74.06 -0.65 15.84 16 37 H 0.07 2.07 7.42 -2.39 -0.02 2.05 16 38 H 0.11 2.19 7.89 -2.38 -0.02 2.17 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.96 7.89 -2.39 -0.02 0.94 16 41 H 0.10 0.79 6.44 -2.39 -0.02 0.77 16 42 H 0.11 2.01 8.11 -2.39 -0.02 1.99 16 43 H 0.15 1.46 7.40 -2.39 -0.02 1.44 16 44 H 0.25 2.58 8.06 -2.91 -0.02 2.55 16 45 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 47 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 48 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -84.84 399.13 3.50 -81.34 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.32 Total: 26.43 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 7.10 Total: 4.99 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.28 Total: -108.40 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.67 Total: -54.43 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -84.84 3.50 -81.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.621 kcal (2) G-P(sol) polarization free energy of solvation -84.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds