Wall clock time and date at job start Sat Apr 11 2020 07:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 119.99841 * 2 1 4 4 H 1.08003 * 119.99921 * 321.91325 * 3 2 1 5 5 C 1.38810 * 119.99906 * 141.92042 * 3 2 1 6 6 N 1.31626 * 119.99928 * 157.18684 * 5 3 2 7 7 Si 1.86793 * 120.00120 * 337.18897 * 5 3 2 8 8 H 1.48505 * 109.47361 * 95.67526 * 7 5 3 9 9 H 1.48497 * 109.47412 * 215.67841 * 7 5 3 10 10 H 1.48501 * 109.47331 * 335.67510 * 7 5 3 11 11 C 1.46497 * 120.00065 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47148 * 89.99853 * 11 2 1 13 13 H 1.09011 * 109.47203 * 305.00076 * 12 11 2 14 14 O 1.42897 * 109.47077 * 65.00016 * 12 11 2 15 15 C 1.52998 * 109.47233 * 185.00375 * 12 11 2 16 16 N 1.46497 * 109.47112 * 180.02562 * 15 12 11 17 17 C 1.46499 * 120.00142 * 269.99470 * 16 15 12 18 18 C 1.34777 * 120.00339 * 90.00059 * 16 15 12 19 19 O 1.21283 * 119.99658 * 359.97438 * 18 16 15 20 20 C 1.50699 * 120.00486 * 180.02562 * 18 16 15 21 21 C 1.50697 * 109.47395 * 179.97438 * 20 18 16 22 22 C 1.33998 * 126.90905 * 265.02841 * 21 20 18 23 23 O 1.34445 * 110.15218 * 179.73838 * 22 21 20 24 24 C 1.34802 * 110.89412 * 359.97438 * 23 22 21 25 25 C 1.38941 * 133.49698 * 179.97438 * 24 23 22 26 26 C 1.37847 * 119.82163 * 180.02562 * 25 24 23 27 27 C 1.38739 * 120.68181 * 0.02562 * 26 25 24 28 28 C 1.36743 * 120.42218 * 359.97088 * 27 26 25 29 29 C 1.39404 * 119.71335 * 0.05370 * 28 27 26 30 30 H 1.09002 * 109.47210 * 265.68896 * 1 2 3 31 31 H 1.08996 * 109.47251 * 25.68580 * 1 2 3 32 32 H 1.09003 * 109.47301 * 145.69067 * 1 2 3 33 33 H 0.96993 * 119.99783 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.46904 * 330.00325 * 11 2 1 35 35 H 1.08995 * 109.47290 * 210.00345 * 11 2 1 36 36 H 0.96695 * 113.99754 * 60.00253 * 14 12 11 37 37 H 1.09001 * 109.47614 * 60.00117 * 15 12 11 38 38 H 1.08997 * 109.46875 * 299.99942 * 15 12 11 39 39 H 1.09002 * 109.47265 * 270.00440 * 17 16 15 40 40 H 1.09004 * 109.47201 * 30.00466 * 17 16 15 41 41 H 1.09002 * 109.47043 * 150.00112 * 17 16 15 42 42 H 1.09000 * 109.47239 * 59.99629 * 20 18 16 43 43 H 1.09002 * 109.46958 * 299.99556 * 20 18 16 44 44 H 1.07998 * 124.91654 * 359.70784 * 22 21 20 45 45 H 1.08007 * 120.08548 * 359.97438 * 25 24 23 46 46 H 1.08000 * 119.65794 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.79210 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.14237 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7821 2.0216 -0.5770 5 6 3.3162 1.3139 0.7414 6 7 4.2021 2.2331 0.4210 7 14 3.6287 0.1815 2.1938 8 1 4.4687 -0.9628 1.7576 9 1 4.3323 0.9323 3.2644 10 1 2.3334 -0.3253 2.7141 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5061 -1.7558 -1.9808 14 8 3.3209 -0.7734 -2.0810 15 6 3.1060 -3.0944 -1.4430 16 7 3.3506 -3.5177 -2.8239 17 6 2.3264 -4.2710 -3.5516 18 6 4.5181 -3.2142 -3.4251 19 8 5.3660 -2.5902 -2.8228 20 6 4.7696 -3.6490 -4.8458 21 6 6.1375 -3.1872 -5.2779 22 6 6.4338 -2.0644 -5.9466 23 8 7.7599 -1.9841 -6.1523 24 6 8.3935 -3.0515 -5.6267 25 6 9.7263 -3.4399 -5.5693 26 6 10.0701 -4.6201 -4.9455 27 6 9.0980 -5.4276 -4.3729 28 6 7.7807 -5.0636 -4.4184 29 6 7.4138 -3.8738 -5.0454 30 1 -0.3634 -0.0773 1.0248 31 1 -0.3633 0.9261 -0.4454 32 1 -0.3634 -0.8489 -0.5793 33 1 5.0171 2.3227 0.9393 34 1 1.6084 -2.0281 0.5147 35 1 3.1499 -1.1382 0.5144 36 1 4.1836 -0.6819 -1.6539 37 1 2.4436 -3.8097 -0.9553 38 1 4.0523 -3.0497 -0.9040 39 1 2.4772 -5.3385 -3.3904 40 1 1.3389 -3.9849 -3.1894 41 1 2.4008 -4.0503 -4.6164 42 1 4.0153 -3.2104 -5.4990 43 1 4.7164 -4.7360 -4.9079 44 1 5.7117 -1.3307 -6.2732 45 1 10.4907 -2.8192 -6.0129 46 1 11.1069 -4.9197 -4.9027 47 1 9.3836 -6.3491 -3.8874 48 1 7.0278 -5.6954 -3.9708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755806246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:06 Heat of formation + Delta-G solvation = -15.536277 kcal Electronic energy + Delta-G solvation = -30963.014808 eV Core-core repulsion = 26793.087141 eV Total energy + Delta-G solvation = -4169.927667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50954 -39.76449 -37.93833 -37.26201 -35.34134 -34.38878 -33.92082 -31.55023 -30.81500 -30.30196 -29.68978 -28.04262 -27.09256 -26.17028 -25.01210 -23.39908 -22.39074 -21.93060 -20.73149 -20.45931 -19.00572 -17.45411 -17.26649 -17.02677 -16.85114 -16.01842 -15.95684 -15.88417 -15.63862 -15.43656 -14.63494 -14.33207 -14.23285 -13.92894 -13.86928 -13.70878 -13.28415 -13.23982 -12.90808 -12.68785 -12.67717 -12.42022 -12.38159 -12.31483 -12.15410 -11.93628 -11.69980 -11.41729 -11.22340 -10.98623 -10.81166 -10.48501 -10.41236 -10.15107 -9.94145 -9.61527 -9.53734 -9.38952 -8.71200 -8.46228 -8.31682 -8.21377 -6.71654 -5.89727 -3.29285 0.84111 1.27660 2.21824 2.75986 2.84138 3.16248 3.32435 3.49461 3.53549 3.63447 4.35636 4.43792 4.57679 4.66584 4.74194 4.83887 4.90082 4.94722 5.03454 5.17201 5.21124 5.25978 5.28542 5.32419 5.36390 5.45166 5.48648 5.50613 5.56330 5.70658 5.79158 5.81200 5.99169 6.08829 6.13310 6.16414 6.25608 6.31494 6.33232 6.35674 6.53782 6.58402 6.65448 6.70381 6.80910 7.10262 7.50082 8.12407 8.39800 8.46675 8.68319 9.04917 9.79037 10.18246 11.26117 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.003008 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.294308 B = 9307.342339 C =10055.846994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.604 5.604 3 C -0.253 4.253 4 H 0.076 0.924 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.870 3.130 8 H -0.287 1.287 9 H -0.301 1.301 10 H -0.272 1.272 11 C 0.108 3.892 12 C 0.080 3.920 13 H 0.083 0.917 14 O -0.533 6.533 15 C 0.078 3.922 16 N -0.612 5.612 17 C 0.079 3.921 18 C 0.516 3.484 19 O -0.518 6.518 20 C -0.064 4.064 21 C -0.161 4.161 22 C 0.027 3.973 23 O -0.191 6.191 24 C 0.050 3.950 25 C -0.106 4.106 26 C -0.099 4.099 27 C -0.138 4.138 28 C -0.069 4.069 29 C -0.110 4.110 30 H 0.006 0.994 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.375 0.625 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.208 0.792 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.126 0.874 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -19.769 -13.817 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.327 5.327 3 C -0.381 4.381 4 H 0.093 0.907 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.701 3.299 8 H -0.215 1.215 9 H -0.229 1.229 10 H -0.197 1.197 11 C -0.019 4.019 12 C 0.016 3.984 13 H 0.101 0.899 14 O -0.338 6.338 15 C -0.046 4.046 16 N -0.346 5.346 17 C -0.064 4.064 18 C 0.303 3.697 19 O -0.392 6.392 20 C -0.104 4.104 21 C -0.163 4.163 22 C -0.038 4.038 23 O -0.092 6.092 24 C 0.003 3.997 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.156 4.156 28 C -0.087 4.087 29 C -0.111 4.111 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.225 0.775 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.144 0.856 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.391 -19.038 -13.973 23.858 hybrid contribution 0.393 -0.779 1.427 1.673 sum 3.783 -19.818 -12.546 23.758 Atomic orbital electron populations 1.21062 0.84598 0.98997 0.97234 1.43881 1.00600 1.01793 1.86417 1.18679 1.06037 0.90363 1.23062 0.90691 1.25405 0.96848 0.96417 0.97765 1.69893 1.08452 1.36125 1.39296 0.87039 0.77684 0.80223 0.84990 1.21538 1.22913 1.19718 1.21830 0.97126 0.88756 0.94163 1.22879 0.93189 0.85981 0.96323 0.89910 1.86482 1.29254 1.62455 1.55582 1.22415 1.02239 0.97899 0.82009 1.47704 1.16246 1.56220 1.14430 1.21770 0.92136 0.95441 0.97092 1.20379 0.81452 0.79617 0.88252 1.90732 1.44355 1.38545 1.65594 1.19971 0.93409 1.02540 0.94507 1.20386 0.93626 0.97159 1.05111 1.23760 0.81792 0.98143 1.00103 1.84012 1.19289 1.40314 1.65613 1.19608 0.94178 0.87153 0.98743 1.19928 0.91261 0.98023 1.03271 1.20880 0.99720 0.93530 0.97585 1.20734 0.92605 1.00628 1.01620 1.20226 0.96419 0.94638 0.97409 1.19717 0.92435 0.96829 1.02087 0.97602 0.93603 0.95767 0.92875 0.93906 0.92485 0.77781 0.90447 0.89933 0.92881 0.90961 0.91176 0.87857 0.88347 0.77519 0.85147 0.84967 0.85565 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.55 10.70 59.85 0.64 3.19 16 2 N -0.60 -14.60 2.45 -181.12 -0.44 -15.05 16 3 C -0.25 -7.23 9.39 -15.06 -0.14 -7.37 16 4 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 5 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 6 N -0.90 -27.99 13.97 55.49 0.78 -27.22 16 7 Si 0.87 22.60 25.09 -169.99 -4.27 18.33 16 8 H -0.29 -7.25 6.68 56.52 0.38 -6.87 16 9 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.11 2.31 4.21 -4.04 -0.02 2.29 16 12 C 0.08 1.50 3.48 -26.73 -0.09 1.41 16 13 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 14 O -0.53 -12.17 11.62 -44.00 -0.51 -12.68 16 15 C 0.08 1.19 5.15 -4.04 -0.02 1.17 16 16 N -0.61 -8.10 2.83 -181.57 -0.51 -8.61 16 17 C 0.08 0.67 10.24 59.85 0.61 1.28 16 18 C 0.52 7.74 7.18 -10.99 -0.08 7.66 16 19 O -0.52 -10.26 14.40 -3.21 -0.05 -10.30 16 20 C -0.06 -0.70 4.80 -29.04 -0.14 -0.84 16 21 C -0.16 -2.11 4.85 -102.66 -0.50 -2.61 16 22 C 0.03 0.35 11.89 29.24 0.35 0.69 16 23 O -0.19 -2.72 10.58 3.94 0.04 -2.67 16 24 C 0.05 0.70 7.42 -38.47 -0.29 0.42 16 25 C -0.11 -1.21 10.07 -39.46 -0.40 -1.61 16 26 C -0.10 -0.97 10.01 -39.54 -0.40 -1.36 16 27 C -0.14 -1.40 9.98 -39.94 -0.40 -1.80 16 28 C -0.07 -0.82 10.05 -39.69 -0.40 -1.22 16 29 C -0.11 -1.52 6.38 -105.16 -0.67 -2.19 16 30 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.05 0.92 8.00 -51.93 -0.42 0.50 16 32 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.06 1.36 3.38 -51.93 -0.18 1.18 16 36 H 0.37 9.15 8.45 45.56 0.38 9.53 16 37 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 41 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 42 H 0.10 0.88 7.40 -51.93 -0.38 0.50 16 43 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 44 H 0.21 1.98 8.06 -52.49 -0.42 1.55 16 45 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -37.14 395.53 -7.40 -44.55 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.37 Total: 7.63 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.03 Total: 0.07 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.18 Total: -50.88 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.52 Total: -25.66 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.27 Total: 18.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.14 -7.40 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.011 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds