Wall clock time and date at job start Sat Apr 11 2020 07:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 119.99841 * 2 1 4 4 H 1.08003 * 119.99921 * 321.91325 * 3 2 1 5 5 C 1.38810 * 119.99906 * 141.92042 * 3 2 1 6 6 N 1.31626 * 119.99928 * 157.18684 * 5 3 2 7 7 Si 1.86793 * 120.00120 * 337.18897 * 5 3 2 8 8 H 1.48505 * 109.47361 * 95.67526 * 7 5 3 9 9 H 1.48497 * 109.47412 * 215.67841 * 7 5 3 10 10 H 1.48501 * 109.47331 * 335.67510 * 7 5 3 11 11 C 1.46497 * 120.00065 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47148 * 89.99853 * 11 2 1 13 13 H 1.09011 * 109.47203 * 305.00076 * 12 11 2 14 14 O 1.42897 * 109.47077 * 65.00016 * 12 11 2 15 15 C 1.52998 * 109.47233 * 185.00375 * 12 11 2 16 16 N 1.46497 * 109.47112 * 180.02562 * 15 12 11 17 17 C 1.46499 * 120.00142 * 269.99470 * 16 15 12 18 18 C 1.34777 * 120.00339 * 90.00059 * 16 15 12 19 19 O 1.21283 * 119.99658 * 359.97438 * 18 16 15 20 20 C 1.50699 * 120.00486 * 180.02562 * 18 16 15 21 21 C 1.50697 * 109.47395 * 179.97438 * 20 18 16 22 22 C 1.33998 * 126.90905 * 265.02841 * 21 20 18 23 23 O 1.34445 * 110.15218 * 179.73838 * 22 21 20 24 24 C 1.34802 * 110.89412 * 359.97438 * 23 22 21 25 25 C 1.38941 * 133.49698 * 179.97438 * 24 23 22 26 26 C 1.37847 * 119.82163 * 180.02562 * 25 24 23 27 27 C 1.38739 * 120.68181 * 0.02562 * 26 25 24 28 28 C 1.36743 * 120.42218 * 359.97088 * 27 26 25 29 29 C 1.39404 * 119.71335 * 0.05370 * 28 27 26 30 30 H 1.09002 * 109.47210 * 265.68896 * 1 2 3 31 31 H 1.08996 * 109.47251 * 25.68580 * 1 2 3 32 32 H 1.09003 * 109.47301 * 145.69067 * 1 2 3 33 33 H 0.96993 * 119.99783 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.46904 * 330.00325 * 11 2 1 35 35 H 1.08995 * 109.47290 * 210.00345 * 11 2 1 36 36 H 0.96695 * 113.99754 * 60.00253 * 14 12 11 37 37 H 1.09001 * 109.47614 * 60.00117 * 15 12 11 38 38 H 1.08997 * 109.46875 * 299.99942 * 15 12 11 39 39 H 1.09002 * 109.47265 * 270.00440 * 17 16 15 40 40 H 1.09004 * 109.47201 * 30.00466 * 17 16 15 41 41 H 1.09002 * 109.47043 * 150.00112 * 17 16 15 42 42 H 1.09000 * 109.47239 * 59.99629 * 20 18 16 43 43 H 1.09002 * 109.46958 * 299.99556 * 20 18 16 44 44 H 1.07998 * 124.91654 * 359.70784 * 22 21 20 45 45 H 1.08007 * 120.08548 * 359.97438 * 25 24 23 46 46 H 1.08000 * 119.65794 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.79210 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.14237 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7821 2.0216 -0.5770 5 6 3.3162 1.3139 0.7414 6 7 4.2021 2.2331 0.4210 7 14 3.6287 0.1815 2.1938 8 1 4.4687 -0.9628 1.7576 9 1 4.3323 0.9323 3.2644 10 1 2.3334 -0.3253 2.7141 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5061 -1.7558 -1.9808 14 8 3.3209 -0.7734 -2.0810 15 6 3.1060 -3.0944 -1.4430 16 7 3.3506 -3.5177 -2.8239 17 6 2.3264 -4.2710 -3.5516 18 6 4.5181 -3.2142 -3.4251 19 8 5.3660 -2.5902 -2.8228 20 6 4.7696 -3.6490 -4.8458 21 6 6.1375 -3.1872 -5.2779 22 6 6.4338 -2.0644 -5.9466 23 8 7.7599 -1.9841 -6.1523 24 6 8.3935 -3.0515 -5.6267 25 6 9.7263 -3.4399 -5.5693 26 6 10.0701 -4.6201 -4.9455 27 6 9.0980 -5.4276 -4.3729 28 6 7.7807 -5.0636 -4.4184 29 6 7.4138 -3.8738 -5.0454 30 1 -0.3634 -0.0773 1.0248 31 1 -0.3633 0.9261 -0.4454 32 1 -0.3634 -0.8489 -0.5793 33 1 5.0171 2.3227 0.9393 34 1 1.6084 -2.0281 0.5147 35 1 3.1499 -1.1382 0.5144 36 1 4.1836 -0.6819 -1.6539 37 1 2.4436 -3.8097 -0.9553 38 1 4.0523 -3.0497 -0.9040 39 1 2.4772 -5.3385 -3.3904 40 1 1.3389 -3.9849 -3.1894 41 1 2.4008 -4.0503 -4.6164 42 1 4.0153 -3.2104 -5.4990 43 1 4.7164 -4.7360 -4.9079 44 1 5.7117 -1.3307 -6.2732 45 1 10.4907 -2.8192 -6.0129 46 1 11.1069 -4.9197 -4.9027 47 1 9.3836 -6.3491 -3.8874 48 1 7.0278 -5.6954 -3.9708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755806246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:05 Heat of formation + Delta-G solvation = -41.820992 kcal Electronic energy + Delta-G solvation = -30964.154599 eV Core-core repulsion = 26793.087141 eV Total energy + Delta-G solvation = -4171.067458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.42765 -40.90751 -38.86979 -38.77258 -36.77077 -35.92696 -34.90161 -33.71235 -31.85571 -31.38500 -30.73462 -29.12591 -28.20297 -27.82452 -26.39646 -24.27037 -23.52928 -23.24756 -22.51646 -21.48882 -20.04131 -18.97401 -18.31783 -18.12680 -17.99858 -17.49659 -17.22591 -17.00636 -16.86472 -16.51039 -16.05945 -16.00463 -15.57829 -15.29201 -15.05607 -14.73173 -14.65827 -14.44273 -14.17456 -13.99316 -13.76384 -13.69454 -13.62219 -13.25696 -13.22434 -13.08366 -13.01387 -12.67804 -12.56661 -12.52251 -12.33373 -12.03806 -11.95959 -11.81850 -11.54195 -11.14815 -11.07168 -10.66825 -10.59511 -9.59784 -9.51186 -9.10598 -8.67380 -8.16368 -5.52174 -0.02359 0.39907 1.25855 1.28356 1.36622 1.47642 1.75856 1.88070 2.18808 2.41233 2.77318 3.04433 3.42292 3.49289 3.57652 3.66995 3.81518 3.91381 4.02519 4.11542 4.14354 4.21584 4.34068 4.38128 4.42387 4.45582 4.51605 4.54014 4.60394 4.65110 4.68585 4.71115 4.74101 4.84042 4.97822 5.00060 5.04483 5.11556 5.23428 5.26548 5.35044 5.46387 5.50315 5.57799 5.72838 5.95903 6.18690 6.19143 6.49467 6.85645 7.03174 7.33680 7.65760 8.05938 9.03817 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.003008 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.294308 B = 9307.342339 C =10055.846994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.619 5.619 3 C -0.239 4.239 4 H 0.030 0.970 5 C -0.019 4.019 6 N -0.948 5.948 7 Si 0.940 3.060 8 H -0.279 1.279 9 H -0.311 1.311 10 H -0.256 1.256 11 C 0.102 3.898 12 C 0.083 3.917 13 H 0.097 0.903 14 O -0.555 6.555 15 C 0.087 3.913 16 N -0.610 5.610 17 C 0.069 3.931 18 C 0.507 3.493 19 O -0.578 6.578 20 C -0.054 4.054 21 C -0.173 4.173 22 C 0.008 3.992 23 O -0.210 6.210 24 C 0.015 3.985 25 C -0.121 4.121 26 C -0.094 4.094 27 C -0.136 4.136 28 C -0.086 4.086 29 C -0.136 4.136 30 H 0.018 0.982 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.258 0.742 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.361 0.639 37 H 0.119 0.881 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.229 0.771 45 H 0.146 0.854 46 H 0.167 0.833 47 H 0.157 0.843 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 -23.885 -13.794 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.344 5.344 3 C -0.369 4.369 4 H 0.048 0.952 5 C -0.215 4.215 6 N -0.593 5.593 7 Si 0.769 3.231 8 H -0.207 1.207 9 H -0.240 1.240 10 H -0.180 1.180 11 C -0.024 4.024 12 C 0.020 3.980 13 H 0.115 0.885 14 O -0.359 6.359 15 C -0.037 4.037 16 N -0.342 5.342 17 C -0.072 4.072 18 C 0.296 3.704 19 O -0.457 6.457 20 C -0.094 4.094 21 C -0.175 4.175 22 C -0.056 4.056 23 O -0.112 6.112 24 C -0.032 4.032 25 C -0.139 4.139 26 C -0.112 4.112 27 C -0.154 4.154 28 C -0.104 4.104 29 C -0.137 4.137 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.207 0.793 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.245 0.755 45 H 0.164 0.836 46 H 0.185 0.815 47 H 0.175 0.825 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.895 -23.231 -13.976 27.177 hybrid contribution 0.760 0.466 1.344 1.613 sum 2.655 -22.764 -12.632 26.169 Atomic orbital electron populations 1.21193 0.82074 1.00285 0.98520 1.44041 1.02290 1.01266 1.86769 1.18484 1.05881 0.91180 1.21383 0.95235 1.25973 0.96801 0.98455 1.00274 1.70038 1.09290 1.39167 1.40765 0.85915 0.78083 0.78285 0.80817 1.20682 1.24034 1.17951 1.21959 0.96202 0.88310 0.95905 1.22940 0.93290 0.87183 0.94575 0.88521 1.86458 1.28888 1.64261 1.56268 1.22154 1.01269 0.96675 0.83603 1.47812 1.16788 1.55791 1.13851 1.22137 0.91004 0.96318 0.97745 1.21117 0.81214 0.78608 0.89436 1.90713 1.46461 1.41329 1.67177 1.20039 0.92841 1.04415 0.92072 1.20744 0.94605 0.97217 1.04897 1.24294 0.81747 0.98902 1.00692 1.83966 1.20049 1.40948 1.66206 1.20159 0.95460 0.87546 0.99988 1.20347 0.90785 0.99065 1.03712 1.21355 1.01461 0.92454 0.95941 1.21179 0.91974 1.01543 1.00728 1.20535 0.97773 0.94428 0.97683 1.20088 0.92862 0.97799 1.02924 0.96407 0.94607 0.91856 0.93257 0.89898 0.95162 0.79293 0.86345 0.92742 0.90226 0.89986 0.89238 0.85181 0.85336 0.75495 0.83609 0.81506 0.82526 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.65 10.70 127.77 1.37 6.02 16 2 N -0.62 -29.19 2.45 -726.94 -1.78 -30.97 16 3 C -0.24 -14.00 9.39 84.03 0.79 -13.21 16 4 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 5 C -0.02 -1.15 5.29 84.86 0.45 -0.70 16 6 N -0.95 -61.90 13.97 21.65 0.30 -61.60 16 7 Si 0.94 47.66 25.09 68.60 1.72 49.38 16 8 H -0.28 -13.67 6.68 99.48 0.66 -13.00 16 9 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 10 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 11 C 0.10 4.12 4.21 86.38 0.36 4.48 16 12 C 0.08 2.95 3.48 30.59 0.11 3.06 16 13 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 14 O -0.56 -25.82 11.62 -140.60 -1.63 -27.45 16 15 C 0.09 2.45 5.15 86.38 0.44 2.89 16 16 N -0.61 -14.51 2.83 -846.76 -2.39 -16.90 16 17 C 0.07 0.86 10.24 127.77 1.31 2.17 16 18 C 0.51 14.70 7.18 87.66 0.63 15.33 16 19 O -0.58 -23.57 14.40 5.35 0.08 -23.49 16 20 C -0.05 -1.09 4.80 29.10 0.14 -0.95 16 21 C -0.17 -4.56 4.85 -18.59 -0.09 -4.65 16 22 C 0.01 0.22 11.89 66.85 0.79 1.01 16 23 O -0.21 -6.33 10.58 -8.82 -0.09 -6.43 16 24 C 0.02 0.44 7.42 22.99 0.17 0.61 16 25 C -0.12 -2.74 10.07 22.35 0.23 -2.51 16 26 C -0.09 -1.68 10.01 22.30 0.22 -1.46 16 27 C -0.14 -2.51 9.98 22.04 0.22 -2.29 16 28 C -0.09 -1.99 10.05 22.20 0.22 -1.76 16 29 C -0.14 -3.80 6.38 -20.21 -0.13 -3.93 16 30 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 32 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 33 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 34 H 0.08 2.68 8.07 -2.38 -0.02 2.66 16 35 H 0.03 1.40 3.38 -2.39 -0.01 1.39 16 36 H 0.36 18.65 8.45 -74.06 -0.63 18.02 16 37 H 0.12 2.34 8.07 -2.39 -0.02 2.32 16 38 H 0.05 1.87 7.42 -2.39 -0.02 1.85 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.90 8.07 -2.38 -0.02 0.88 16 41 H 0.09 0.79 6.44 -2.39 -0.02 0.77 16 42 H 0.13 1.86 7.40 -2.39 -0.02 1.84 16 43 H 0.13 1.75 8.11 -2.39 -0.02 1.73 16 44 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 45 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 46 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 47 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -87.33 395.53 3.74 -83.59 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.31 Total: 29.76 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 7.23 Total: 4.11 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.87 Total: -109.47 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -1.65 Total: -57.37 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.72 Total: 49.38 kcal Total: -87.33 3.74 -83.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.769 kcal (2) G-P(sol) polarization free energy of solvation -87.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds