Wall clock time and date at job start Sat Apr 11 2020 07:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 120.00010 * 2 1 4 4 C 1.53008 * 109.46296 * 90.00169 * 3 2 1 5 5 C 1.53002 * 109.46355 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46708 * 180.02562 * 5 4 3 7 7 O 1.20824 * 120.00225 * 359.97438 * 6 5 4 8 8 O 1.34232 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00122 * 174.80114 * 8 6 5 10 10 C 1.50702 * 112.84790 * 300.32815 * 9 8 6 11 11 H 1.08000 * 120.00129 * 114.95548 * 10 9 8 12 12 C 1.37877 * 120.00162 * 295.22788 * 10 9 8 13 13 N 1.31519 * 119.99731 * 4.76912 * 12 10 9 14 14 Si 1.86803 * 120.00193 * 184.76718 * 12 10 9 15 15 H 1.48494 * 109.46878 * 89.99976 * 14 12 10 16 16 H 1.48495 * 109.46911 * 209.99970 * 14 12 10 17 17 H 1.48500 * 109.47037 * 330.00011 * 14 12 10 18 18 C 1.53778 * 113.61178 * 71.52475 * 9 8 6 19 19 C 1.53954 * 87.02200 * 89.22880 * 18 9 8 20 20 C 1.53782 * 113.61247 * 169.13136 * 9 8 6 21 21 C 1.34771 * 120.00297 * 180.02562 * 2 1 3 22 22 O 1.21514 * 120.00541 * 184.47202 * 21 2 1 23 23 C 1.48150 * 120.00018 * 4.46570 * 21 2 1 24 24 C 1.39817 * 120.92134 * 23.83082 * 23 21 2 25 25 C 1.38153 * 119.00035 * 179.80303 * 24 23 21 26 26 N 1.31810 * 120.89664 * 0.47921 * 25 24 23 27 27 C 1.31814 * 122.04548 * 359.74530 * 26 25 24 28 28 C 1.38147 * 120.90020 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47510 * 84.02755 * 1 2 3 30 30 H 1.08999 * 109.46981 * 204.02073 * 1 2 3 31 31 H 1.08997 * 109.47230 * 324.01986 * 1 2 3 32 32 H 1.08999 * 109.47144 * 330.01194 * 3 2 1 33 33 H 1.08988 * 109.47491 * 210.00345 * 3 2 1 34 34 H 1.08999 * 109.46687 * 60.00744 * 4 3 2 35 35 H 1.08996 * 109.47694 * 299.99854 * 4 3 2 36 36 H 1.08999 * 109.47239 * 60.00930 * 5 4 3 37 37 H 1.08995 * 109.47706 * 299.99992 * 5 4 3 38 38 H 0.96996 * 119.99714 * 185.00023 * 13 12 10 39 39 H 1.09001 * 113.61250 * 203.75062 * 18 9 8 40 40 H 1.08997 * 113.61446 * 334.65080 * 18 9 8 41 41 H 1.08995 * 113.53679 * 270.81533 * 19 18 9 42 42 H 1.09000 * 113.74347 * 139.93739 * 19 18 9 43 43 H 1.08998 * 113.61537 * 25.34897 * 20 9 8 44 44 H 1.08999 * 113.60765 * 156.16700 * 20 9 8 45 45 H 1.07998 * 120.50109 * 359.97438 * 24 23 21 46 46 H 1.08001 * 119.55188 * 180.23091 * 25 24 23 47 47 H 1.08004 * 119.54572 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.49644 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7103 1.4426 5 6 3.2169 3.0356 1.4427 6 6 3.4686 3.4702 2.8635 7 8 3.0764 2.7900 3.7819 8 8 4.1276 4.6136 3.1090 9 6 4.2330 5.0290 4.4963 10 6 2.8904 5.2416 5.1470 11 1 2.5782 4.6048 5.9615 12 6 2.0583 6.2454 4.6989 13 7 2.3941 6.9563 3.6446 14 14 0.4538 6.5957 5.5892 15 1 0.6882 7.6049 6.6530 16 1 -0.5447 7.1185 4.6224 17 1 -0.0574 5.3423 6.1998 18 6 5.1903 4.1598 5.3286 19 6 6.3104 5.1255 4.9010 20 6 5.2161 6.1905 4.7185 21 6 2.1389 -1.1671 -0.0005 22 8 3.3512 -1.1688 0.0815 23 6 1.4016 -2.4482 -0.1010 24 6 0.1279 -2.5010 -0.6753 25 6 -0.5222 -3.7176 -0.7524 26 7 0.0384 -4.8153 -0.2854 27 6 1.2350 -4.8088 0.2674 28 6 1.9576 -3.6369 0.3812 29 1 -0.3634 0.1069 -1.0221 30 1 -0.3633 -0.9387 0.4183 31 1 -0.3633 0.8316 0.6037 32 1 1.6083 2.0285 -0.5136 33 1 3.1498 1.1385 -0.5138 34 1 3.0416 0.9506 1.9563 35 1 1.5001 1.8406 1.9565 36 1 2.6273 3.7951 0.9291 37 1 4.1692 2.9058 0.9287 38 1 1.8459 7.7088 3.3724 39 1 4.9806 4.1804 6.3980 40 1 5.3120 3.1489 4.9396 41 1 6.8003 4.8391 3.9704 42 1 7.0173 5.3579 5.6974 43 1 5.3586 6.8165 3.8377 44 1 5.0126 6.7682 5.6201 45 1 -0.3395 -1.6047 -1.0555 46 1 -1.5048 -3.7692 -1.1977 47 1 1.6559 -5.7322 0.6371 48 1 2.9374 -3.6391 0.8357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772348369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:55:29 Heat of formation + Delta-G solvation = -42.624794 kcal Electronic energy + Delta-G solvation = -30077.861189 eV Core-core repulsion = 25906.758876 eV Total energy + Delta-G solvation = -4171.102313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12366 -39.51941 -39.26405 -37.19331 -36.24352 -34.14528 -33.80773 -32.42460 -32.34591 -31.61562 -28.12620 -27.14765 -26.41555 -24.60716 -24.50136 -23.81344 -22.85770 -22.00198 -20.18445 -19.84730 -18.17403 -17.96441 -17.22674 -17.03496 -16.42947 -16.12159 -15.71850 -15.55301 -15.38688 -15.06747 -14.81813 -14.69962 -14.25832 -14.10435 -14.06854 -13.83569 -13.48420 -13.36989 -13.15481 -12.64962 -12.42024 -12.00740 -11.85086 -11.77450 -11.57166 -11.39156 -11.28779 -11.05784 -10.91278 -10.57129 -10.50949 -10.46701 -10.22314 -10.06202 -9.97730 -9.91391 -9.76349 -9.55006 -9.24099 -8.96863 -8.77885 -8.51349 -8.35919 -6.10568 -4.21607 0.38246 0.68058 2.48717 2.65102 3.23457 3.30789 3.36933 3.44812 3.50670 3.94545 4.02065 4.04884 4.35513 4.36776 4.49904 4.64878 4.77973 4.94228 4.96153 5.11072 5.16504 5.24642 5.29774 5.34233 5.36588 5.40123 5.52486 5.62066 5.67926 5.70883 5.76478 5.85792 5.92996 6.10482 6.19744 6.27292 6.28055 6.45576 6.48476 6.51492 6.83247 6.84838 7.00969 7.18377 7.27219 7.50309 7.55515 7.79169 7.80521 7.93107 8.35800 8.82635 9.24539 9.48643 10.93864 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002312 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.759867 B =12106.632349 C =12951.446710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.605 5.605 3 C 0.116 3.884 4 C -0.120 4.120 5 C -0.114 4.114 6 C 0.464 3.536 7 O -0.513 6.513 8 O -0.339 6.339 9 C 0.235 3.765 10 C -0.519 4.519 11 H 0.065 0.935 12 C 0.074 3.926 13 N -0.865 5.865 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.096 4.096 21 C 0.555 3.445 22 O -0.522 6.522 23 C -0.084 4.084 24 C -0.160 4.160 25 C 0.092 3.908 26 N -0.472 5.472 27 C 0.095 3.905 28 C -0.116 4.116 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -15.049 -11.483 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.337 5.337 3 C -0.006 4.006 4 C -0.159 4.159 5 C -0.153 4.153 6 C 0.306 3.694 7 O -0.402 6.402 8 O -0.255 6.255 9 C 0.201 3.799 10 C -0.556 4.556 11 H 0.083 0.917 12 C -0.131 4.131 13 N -0.502 5.502 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.190 4.190 19 C -0.190 4.190 20 C -0.134 4.134 21 C 0.342 3.658 22 O -0.398 6.398 23 C -0.095 4.095 24 C -0.180 4.180 25 C -0.064 4.064 26 N -0.182 5.182 27 C -0.061 4.061 28 C -0.137 4.137 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.176 0.824 46 H 0.179 0.821 47 H 0.181 0.819 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.259 -15.870 -11.356 19.974 hybrid contribution -0.634 1.176 0.614 1.470 sum -4.893 -14.694 -10.742 18.848 Atomic orbital electron populations 1.22503 0.79530 1.04504 1.01887 1.47700 1.07185 1.06039 1.72753 1.21623 0.97720 0.83451 0.97812 1.21688 1.01717 0.96573 0.95872 1.21211 1.02388 0.97733 0.93928 1.22792 0.75617 0.79965 0.90990 1.90551 1.48101 1.54745 1.46813 1.86382 1.66914 1.37677 1.34504 1.20564 0.93761 0.90386 0.75237 1.21260 1.01055 1.16016 1.17290 0.91700 1.25074 0.97826 0.96152 0.94076 1.70066 1.39188 1.18202 1.22768 0.86629 0.83425 0.78702 0.79612 1.20369 1.21156 1.19682 1.23459 0.97140 0.97558 1.00833 1.23024 0.96625 0.99349 0.99996 1.22727 0.93476 0.96095 1.01104 1.18278 0.87099 0.83350 0.77026 1.90810 1.13342 1.86933 1.48760 1.20373 0.94954 0.94444 0.99704 1.23127 0.94454 1.01046 0.99347 1.22817 1.00030 0.87412 0.96181 1.67556 1.11315 1.31269 1.08034 1.22822 0.90117 0.97892 0.95298 1.22347 1.01445 0.91992 0.97914 0.91653 0.89509 0.90298 0.89797 0.89435 0.90726 0.90875 0.88418 0.88938 0.92902 0.90257 0.93026 0.91385 0.92946 0.91923 0.90002 0.82413 0.82088 0.81950 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 8.72 59.84 0.52 0.93 16 2 N -0.60 -6.48 2.87 -182.58 -0.52 -7.00 16 3 C 0.12 1.32 5.40 -4.04 -0.02 1.30 16 4 C -0.12 -1.79 4.83 -26.73 -0.13 -1.92 16 5 C -0.11 -1.90 5.81 -27.88 -0.16 -2.06 16 6 C 0.46 10.63 7.40 36.01 0.27 10.90 16 7 O -0.51 -13.05 14.14 -18.75 -0.27 -13.32 16 8 O -0.34 -8.50 9.85 -39.26 -0.39 -8.88 16 9 C 0.23 5.95 0.33 -90.96 -0.03 5.92 16 10 C -0.52 -14.41 7.19 -34.44 -0.25 -14.66 16 11 H 0.06 1.87 7.82 -52.49 -0.41 1.46 16 12 C 0.07 2.02 5.38 -17.82 -0.10 1.92 16 13 N -0.87 -24.04 12.79 55.43 0.71 -23.33 16 14 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.15 -3.43 6.95 -25.83 -0.18 -3.61 16 19 C -0.15 -3.04 8.03 -25.83 -0.21 -3.25 16 20 C -0.10 -2.21 7.07 -25.92 -0.18 -2.40 16 21 C 0.55 6.97 7.53 -12.19 -0.09 6.88 16 22 O -0.52 -8.41 16.31 5.35 0.09 -8.33 16 23 C -0.08 -0.85 5.54 -104.65 -0.58 -1.43 16 24 C -0.16 -1.19 7.64 -39.02 -0.30 -1.49 16 25 C 0.09 0.68 11.17 -17.59 -0.20 0.49 16 26 N -0.47 -4.39 10.34 -13.30 -0.14 -4.53 16 27 C 0.10 0.81 11.17 -17.59 -0.20 0.61 16 28 C -0.12 -1.12 9.69 -39.03 -0.38 -1.49 16 29 H 0.07 0.30 7.24 -51.93 -0.38 -0.08 16 30 H 0.09 0.55 4.99 -51.93 -0.26 0.30 16 31 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.09 1.05 7.49 -51.94 -0.39 0.66 16 34 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 40 H 0.05 1.17 7.54 -51.93 -0.39 0.78 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 45 H 0.16 0.78 4.48 -52.49 -0.24 0.55 16 46 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 48 H 0.15 1.36 7.92 -52.48 -0.42 0.95 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -35.04 398.20 -8.84 -43.88 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.09 Total: 2.75 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.21 Total: -3.35 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.05 Total: -34.86 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.56 Total: -30.53 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.04 -8.84 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772348369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.255 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds