Wall clock time and date at job start Sat Apr 11 2020 07:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00175 * 2 1 4 4 C 1.38719 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.38106 * 120.00395 * 179.72527 * 4 3 2 6 6 C 1.38728 * 119.99721 * 0.55220 * 5 4 3 7 7 O 1.35979 * 119.99889 * 179.74674 * 6 5 4 8 8 C 1.42903 * 117.00329 * 359.72440 * 7 6 5 9 9 C 1.38675 * 119.99606 * 359.47163 * 6 5 4 10 10 C 1.50705 * 119.99550 * 180.23592 * 9 6 5 11 11 C 1.50692 * 109.47526 * 84.99853 * 10 9 6 12 12 O 1.21285 * 120.00207 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00182 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99938 * 179.97438 * 13 11 10 15 15 H 1.08998 * 115.51722 * 9.41695 * 14 13 11 16 16 C 1.53005 * 117.44211 * 224.00110 * 14 13 11 17 17 H 1.09005 * 119.53462 * 4.11523 * 16 14 13 18 18 C 1.54380 * 118.12414 * 160.81294 * 16 14 13 19 19 N 1.48145 * 104.62151 * 87.18926 * 18 16 14 20 20 C 1.36930 * 127.84101 * 140.41292 * 19 18 16 21 21 H 1.08001 * 120.00185 * 344.90678 * 20 19 18 22 22 C 1.38816 * 120.00237 * 164.89910 * 20 19 18 23 23 N 1.31615 * 119.99794 * 350.66407 * 22 20 19 24 24 Si 1.86800 * 119.99863 * 170.66193 * 22 20 19 25 25 H 1.48497 * 109.47302 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46759 * 120.00325 * 24 22 20 27 27 H 1.48494 * 109.47054 * 239.99983 * 24 22 20 28 28 C 1.51695 * 104.54507 * 320.18939 * 19 18 16 29 29 C 1.53000 * 117.44082 * 154.83235 * 14 13 11 30 30 H 1.09003 * 119.54319 * 355.88032 * 29 14 13 31 31 C 1.38150 * 120.00366 * 0.25201 * 9 6 5 32 32 H 1.08997 * 109.47257 * 300.00318 * 1 2 3 33 33 H 1.09002 * 109.46867 * 59.99932 * 1 2 3 34 34 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 35 35 H 1.08003 * 119.99553 * 359.97438 * 4 3 2 36 36 H 1.07998 * 120.00830 * 180.27468 * 5 4 3 37 37 H 1.08997 * 109.47399 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47103 * 300.00221 * 8 7 6 39 39 H 1.09004 * 109.46569 * 59.99833 * 8 7 6 40 40 H 1.09001 * 109.46393 * 204.99563 * 10 9 6 41 41 H 1.08997 * 109.46915 * 324.99587 * 10 9 6 42 42 H 0.96998 * 119.99678 * 0.02562 * 13 11 10 43 43 H 1.08999 * 110.40605 * 205.97863 * 18 16 14 44 44 H 1.09003 * 110.40509 * 328.40536 * 18 16 14 45 45 H 0.96999 * 119.99796 * 179.97438 * 23 22 20 46 46 H 1.09005 * 111.96239 * 281.12544 * 28 19 18 47 47 H 1.09000 * 110.48851 * 157.55325 * 28 19 18 48 48 H 1.07995 * 119.99951 * 180.02562 * 31 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9179 3.6056 0.0052 6 6 3.3032 3.6782 -0.0001 7 8 3.9206 4.8898 0.0004 8 6 3.0806 6.0459 0.0003 9 6 4.0585 2.5151 0.0000 10 6 5.5634 2.5940 -0.0004 11 6 6.0590 2.7443 1.4147 12 8 5.2681 2.7830 2.3334 13 7 7.3812 2.8346 1.6598 14 6 7.8629 2.9812 3.0355 15 1 7.1105 2.8491 3.8131 16 6 8.9671 4.0093 3.2902 17 1 9.3118 4.6415 2.4719 18 6 9.1770 4.5088 4.7359 19 7 10.1095 3.5280 5.3386 20 6 11.1537 3.7748 6.1893 21 1 11.5302 4.7805 6.3047 22 6 11.7284 2.7325 6.9036 23 7 11.1598 1.5455 6.9077 24 14 13.3087 3.0145 7.8589 25 1 13.7417 4.4254 7.6940 26 1 13.0737 2.7342 9.2982 27 1 14.3665 2.1082 7.3444 28 6 9.6458 2.1850 4.8071 29 6 9.2835 2.5015 3.3401 30 1 9.8639 2.0103 2.5591 31 6 3.4313 1.2842 0.0000 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2124 2.3185 -0.0014 36 1 1.3298 4.5114 0.0093 37 1 3.6984 6.9439 0.0011 38 1 2.4517 6.0380 -0.8899 39 1 2.4511 6.0376 0.8901 40 1 5.9748 1.6828 -0.4346 41 1 5.8820 3.4535 -0.5901 42 1 8.0138 2.8033 0.9251 43 1 9.6215 5.5040 4.7333 44 1 8.2307 4.5156 5.2768 45 1 11.5616 0.8170 7.4065 46 1 8.7721 1.8141 5.3430 47 1 10.4562 1.4573 4.8500 48 1 4.0195 0.3784 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960399967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:12 Heat of formation + Delta-G solvation = -15.520740 kcal Electronic energy + Delta-G solvation = -29614.010505 eV Core-core repulsion = 25444.083512 eV Total energy + Delta-G solvation = -4169.926993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.84036 -39.62526 -39.12411 -38.13316 -36.57482 -34.27427 -33.02968 -32.44207 -30.36100 -30.06185 -28.26229 -27.27533 -27.09862 -27.05918 -25.47261 -22.66745 -22.22979 -21.37208 -20.43732 -20.04025 -19.15354 -18.26850 -17.74121 -17.10991 -16.94670 -16.79499 -16.15063 -15.99231 -15.71424 -15.09702 -14.88228 -14.78916 -14.62798 -14.03904 -13.72491 -13.59124 -13.37701 -13.11599 -13.03211 -12.75845 -12.68901 -12.35069 -12.12107 -12.07746 -11.83359 -11.77384 -11.43261 -11.38216 -10.98292 -10.93884 -10.82056 -10.64723 -10.38177 -10.13986 -10.09294 -9.77546 -9.63817 -9.19105 -9.04794 -8.71264 -8.25198 -7.89244 -6.84138 -5.75856 -3.08645 0.99706 1.29096 2.78081 2.99695 3.14335 3.21281 3.40340 3.46076 3.48708 3.61578 4.37383 4.38961 4.47716 4.50189 4.74792 4.78411 4.84077 4.85658 4.90935 4.95071 5.02411 5.16246 5.19706 5.21435 5.23756 5.27830 5.40037 5.43155 5.45006 5.58481 5.60896 5.84576 5.93615 5.95064 6.02485 6.08718 6.20889 6.30737 6.37935 6.58161 6.73629 6.88745 6.94610 7.05173 7.27252 7.35076 7.55193 7.68744 7.73622 8.18263 8.41930 9.09859 9.76331 10.53584 11.39305 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.001991 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.393863 B =14062.996438 C =14942.844408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.091 3.909 4 C -0.169 4.169 5 C -0.169 4.169 6 C 0.111 3.889 7 O -0.312 6.312 8 C 0.029 3.971 9 C -0.056 4.056 10 C -0.094 4.094 11 C 0.520 3.480 12 O -0.530 6.530 13 N -0.700 5.700 14 C 0.098 3.902 15 H 0.130 0.870 16 C -0.183 4.183 17 H 0.102 0.898 18 C 0.158 3.842 19 N -0.599 5.599 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.185 3.815 29 C -0.179 4.179 30 H 0.101 0.899 31 C -0.099 4.099 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.398 0.602 43 H 0.051 0.949 44 H 0.025 0.975 45 H 0.253 0.747 46 H 0.032 0.968 47 H 0.091 0.909 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 2.281 -21.172 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.047 3.953 4 C -0.188 4.188 5 C -0.188 4.188 6 C 0.065 3.935 7 O -0.225 6.225 8 C -0.066 4.066 9 C -0.057 4.057 10 C -0.134 4.134 11 C 0.306 3.694 12 O -0.405 6.405 13 N -0.349 5.349 14 C -0.008 4.008 15 H 0.148 0.852 16 C -0.204 4.204 17 H 0.120 0.880 18 C 0.032 3.968 19 N -0.324 5.324 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.563 5.563 24 Si 0.742 3.258 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.061 3.939 29 C -0.200 4.200 30 H 0.119 0.881 31 C -0.118 4.118 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.232 0.768 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.109 0.891 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.762 2.076 -20.305 29.115 hybrid contribution 0.589 0.385 0.081 0.708 sum -20.173 2.461 -20.224 28.671 Atomic orbital electron populations 1.23020 0.78673 1.03838 1.01133 1.86080 1.21085 1.26660 1.89348 1.18769 0.92076 0.84201 1.00285 1.20974 0.99843 0.91697 1.06241 1.20941 0.93094 0.98369 1.06411 1.18619 0.90689 0.85236 0.98909 1.86081 1.35442 1.12133 1.88885 1.23031 0.95928 0.86627 1.01043 1.18341 0.93969 0.90036 1.03329 1.20492 0.92129 1.05277 0.95461 1.20363 0.82071 0.76096 0.90845 1.90720 1.54776 1.48893 1.46154 1.45370 1.06916 1.74169 1.08435 1.21836 0.91977 1.02998 0.84009 0.85226 1.24347 1.02826 0.93011 1.00246 0.87974 1.21055 0.93416 0.93524 0.88839 1.46048 1.32192 1.00923 1.53191 1.19056 1.05644 0.94555 1.15842 0.90507 1.24877 0.99938 0.96435 0.99280 1.69899 1.39360 1.01615 1.45438 0.86049 0.82950 0.77402 0.79370 1.20423 1.21754 1.21685 1.21671 0.98466 0.89293 0.84498 1.24561 0.95682 0.97628 1.02126 0.88072 1.20071 0.91459 0.97247 1.02981 0.92751 0.92895 0.88315 0.85336 0.85201 0.88241 0.92927 0.92698 0.87794 0.87388 0.76824 0.93070 0.95683 0.93646 0.95026 0.89061 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.38 10.50 -19.68 -0.21 -3.59 16 3 C 0.09 1.04 6.69 -39.24 -0.26 0.78 16 4 C -0.17 -1.68 9.03 -39.45 -0.36 -2.04 16 5 C -0.17 -1.74 9.03 -39.45 -0.36 -2.10 16 6 C 0.11 1.33 6.66 -39.24 -0.26 1.07 16 7 O -0.31 -3.61 9.63 -19.67 -0.19 -3.80 16 8 C 0.03 0.22 9.81 101.05 0.99 1.21 16 9 C -0.06 -0.67 4.38 -104.49 -0.46 -1.13 16 10 C -0.09 -0.99 5.55 -29.04 -0.16 -1.15 16 11 C 0.52 7.61 7.82 -10.99 -0.09 7.52 16 12 O -0.53 -10.13 15.60 5.55 0.09 -10.05 16 13 N -0.70 -9.66 5.56 -53.80 -0.30 -9.96 16 14 C 0.10 1.71 5.97 -67.93 -0.41 1.30 16 15 H 0.13 2.61 7.40 -51.93 -0.38 2.22 16 16 C -0.18 -3.35 7.05 -89.29 -0.63 -3.98 16 17 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 18 C 0.16 3.44 7.05 -2.41 -0.02 3.43 16 19 N -0.60 -15.64 3.45 -165.83 -0.57 -16.21 16 20 C -0.22 -6.29 10.36 -15.06 -0.16 -6.44 16 21 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 22 C -0.01 -0.24 5.41 -17.43 -0.09 -0.34 16 23 N -0.92 -27.16 10.84 55.49 0.60 -26.56 16 24 Si 0.91 22.17 29.56 -169.99 -5.03 17.14 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.19 4.52 5.91 -0.37 0.00 4.52 16 29 C -0.18 -3.42 6.96 -89.29 -0.62 -4.04 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 31 C -0.10 -1.17 9.61 -39.45 -0.38 -1.55 16 32 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.13 0.94 6.29 -52.48 -0.33 0.61 16 36 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 39 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 40 H 0.10 0.80 8.05 -51.93 -0.42 0.39 16 41 H 0.11 0.97 7.69 -51.93 -0.40 0.57 16 42 H 0.40 4.20 8.83 -40.82 -0.36 3.84 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 2.45 6.58 -51.93 -0.34 2.11 16 48 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -35.72 396.57 -8.98 -44.70 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.08 Total: 4.11 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.26 Total: -1.76 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.27 Total: -52.73 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.31 Total: -17.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.72 -8.98 -44.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960399967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.175 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds