Wall clock time and date at job start Sat Apr 11 2020 07:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00175 * 2 1 4 4 C 1.38719 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.38106 * 120.00395 * 179.72527 * 4 3 2 6 6 C 1.38728 * 119.99721 * 0.55220 * 5 4 3 7 7 O 1.35979 * 119.99889 * 179.74674 * 6 5 4 8 8 C 1.42903 * 117.00329 * 359.72440 * 7 6 5 9 9 C 1.38675 * 119.99606 * 359.47163 * 6 5 4 10 10 C 1.50705 * 119.99550 * 180.23592 * 9 6 5 11 11 C 1.50692 * 109.47526 * 84.99853 * 10 9 6 12 12 O 1.21285 * 120.00207 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00182 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99938 * 179.97438 * 13 11 10 15 15 H 1.08998 * 115.51722 * 9.41695 * 14 13 11 16 16 C 1.53005 * 117.44211 * 224.00110 * 14 13 11 17 17 H 1.09005 * 119.53462 * 4.11523 * 16 14 13 18 18 C 1.54380 * 118.12414 * 160.81294 * 16 14 13 19 19 N 1.48145 * 104.62151 * 87.18926 * 18 16 14 20 20 C 1.36930 * 127.84101 * 140.41292 * 19 18 16 21 21 H 1.08001 * 120.00185 * 344.90678 * 20 19 18 22 22 C 1.38816 * 120.00237 * 164.89910 * 20 19 18 23 23 N 1.31615 * 119.99794 * 350.66407 * 22 20 19 24 24 Si 1.86800 * 119.99863 * 170.66193 * 22 20 19 25 25 H 1.48497 * 109.47302 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.46759 * 120.00325 * 24 22 20 27 27 H 1.48494 * 109.47054 * 239.99983 * 24 22 20 28 28 C 1.51695 * 104.54507 * 320.18939 * 19 18 16 29 29 C 1.53000 * 117.44082 * 154.83235 * 14 13 11 30 30 H 1.09003 * 119.54319 * 355.88032 * 29 14 13 31 31 C 1.38150 * 120.00366 * 0.25201 * 9 6 5 32 32 H 1.08997 * 109.47257 * 300.00318 * 1 2 3 33 33 H 1.09002 * 109.46867 * 59.99932 * 1 2 3 34 34 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 35 35 H 1.08003 * 119.99553 * 359.97438 * 4 3 2 36 36 H 1.07998 * 120.00830 * 180.27468 * 5 4 3 37 37 H 1.08997 * 109.47399 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47103 * 300.00221 * 8 7 6 39 39 H 1.09004 * 109.46569 * 59.99833 * 8 7 6 40 40 H 1.09001 * 109.46393 * 204.99563 * 10 9 6 41 41 H 1.08997 * 109.46915 * 324.99587 * 10 9 6 42 42 H 0.96998 * 119.99678 * 0.02562 * 13 11 10 43 43 H 1.08999 * 110.40605 * 205.97863 * 18 16 14 44 44 H 1.09003 * 110.40509 * 328.40536 * 18 16 14 45 45 H 0.96999 * 119.99796 * 179.97438 * 23 22 20 46 46 H 1.09005 * 111.96239 * 281.12544 * 28 19 18 47 47 H 1.09000 * 110.48851 * 157.55325 * 28 19 18 48 48 H 1.07995 * 119.99951 * 180.02562 * 31 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9179 3.6056 0.0052 6 6 3.3032 3.6782 -0.0001 7 8 3.9206 4.8898 0.0004 8 6 3.0806 6.0459 0.0003 9 6 4.0585 2.5151 0.0000 10 6 5.5634 2.5940 -0.0004 11 6 6.0590 2.7443 1.4147 12 8 5.2681 2.7830 2.3334 13 7 7.3812 2.8346 1.6598 14 6 7.8629 2.9812 3.0355 15 1 7.1105 2.8491 3.8131 16 6 8.9671 4.0093 3.2902 17 1 9.3118 4.6415 2.4719 18 6 9.1770 4.5088 4.7359 19 7 10.1095 3.5280 5.3386 20 6 11.1537 3.7748 6.1893 21 1 11.5302 4.7805 6.3047 22 6 11.7284 2.7325 6.9036 23 7 11.1598 1.5455 6.9077 24 14 13.3087 3.0145 7.8589 25 1 13.7417 4.4254 7.6940 26 1 13.0737 2.7342 9.2982 27 1 14.3665 2.1082 7.3444 28 6 9.6458 2.1850 4.8071 29 6 9.2835 2.5015 3.3401 30 1 9.8639 2.0103 2.5591 31 6 3.4313 1.2842 0.0000 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2124 2.3185 -0.0014 36 1 1.3298 4.5114 0.0093 37 1 3.6984 6.9439 0.0011 38 1 2.4517 6.0380 -0.8899 39 1 2.4511 6.0376 0.8901 40 1 5.9748 1.6828 -0.4346 41 1 5.8820 3.4535 -0.5901 42 1 8.0138 2.8033 0.9251 43 1 9.6215 5.5040 4.7333 44 1 8.2307 4.5156 5.2768 45 1 11.5616 0.8170 7.4065 46 1 8.7721 1.8141 5.3430 47 1 10.4562 1.4573 4.8500 48 1 4.0195 0.3784 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960399967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:11 Heat of formation + Delta-G solvation = -39.784138 kcal Electronic energy + Delta-G solvation = -29615.062645 eV Core-core repulsion = 25444.083512 eV Total energy + Delta-G solvation = -4170.979133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66196 -40.88004 -39.92529 -39.55273 -37.35248 -35.93909 -34.35696 -33.69391 -32.03001 -30.94605 -29.08997 -28.89090 -28.03021 -27.72953 -27.30683 -23.91191 -23.18634 -22.57492 -21.92690 -21.29810 -20.78814 -19.06053 -18.84140 -18.46930 -18.02951 -17.85264 -17.53901 -16.71305 -16.69628 -16.38056 -16.05326 -15.73095 -15.63248 -15.39490 -15.14795 -14.76743 -14.61287 -14.51791 -14.17922 -13.72883 -13.66894 -13.44492 -13.31948 -13.26686 -12.97991 -12.87050 -12.77228 -12.71518 -12.43440 -12.40384 -12.12346 -11.99402 -11.82966 -11.65301 -11.62150 -11.33723 -11.01495 -10.84170 -10.69969 -9.90700 -9.66140 -8.93468 -8.67032 -7.90919 -5.26546 0.20164 0.48799 1.47089 1.47884 1.59069 1.62981 2.02982 2.36584 2.48586 2.49596 2.75790 2.88287 3.30245 3.53654 3.61900 3.77128 3.85376 3.91631 3.96033 4.11271 4.14733 4.16685 4.27643 4.36841 4.38918 4.41624 4.41978 4.49052 4.51084 4.53244 4.67708 4.73943 4.77121 4.83009 4.87280 4.94331 4.98305 5.17485 5.26426 5.28592 5.32153 5.40999 5.45468 5.57438 5.60503 5.64552 6.12350 6.34781 6.54388 6.60791 6.95628 7.31410 7.65148 8.45363 9.23965 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.001991 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.393863 B =14062.996438 C =14942.844408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.174 4.174 6 C 0.093 3.907 7 O -0.331 6.331 8 C 0.020 3.980 9 C -0.076 4.076 10 C -0.083 4.083 11 C 0.519 3.481 12 O -0.580 6.580 13 N -0.684 5.684 14 C 0.117 3.883 15 H 0.099 0.901 16 C -0.165 4.165 17 H 0.137 0.863 18 C 0.151 3.849 19 N -0.623 5.623 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.982 3.018 25 H -0.264 1.264 26 H -0.294 1.294 27 H -0.289 1.289 28 C 0.187 3.813 29 C -0.176 4.176 30 H 0.128 0.872 31 C -0.117 4.117 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.419 0.581 43 H 0.063 0.937 44 H 0.013 0.987 45 H 0.249 0.751 46 H 0.002 0.998 47 H 0.061 0.939 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.994 3.531 -23.553 31.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.188 4.188 5 C -0.192 4.192 6 C 0.048 3.952 7 O -0.245 6.245 8 C -0.074 4.074 9 C -0.077 4.077 10 C -0.122 4.122 11 C 0.308 3.692 12 O -0.459 6.459 13 N -0.335 5.335 14 C 0.010 3.990 15 H 0.117 0.883 16 C -0.186 4.186 17 H 0.154 0.846 18 C 0.025 3.975 19 N -0.348 5.348 20 C -0.366 4.366 21 H 0.101 0.899 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.810 3.190 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.216 1.216 28 C 0.062 3.938 29 C -0.197 4.197 30 H 0.146 0.854 31 C -0.135 4.135 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.257 0.743 43 H 0.082 0.918 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.080 0.920 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.116 3.353 -22.746 31.217 hybrid contribution 0.535 0.019 0.852 1.006 sum -20.580 3.372 -21.894 30.237 Atomic orbital electron populations 1.23310 0.76682 1.05449 1.02098 1.86051 1.23262 1.26594 1.89351 1.18991 0.92327 0.84977 1.00507 1.21288 1.01151 0.91148 1.05178 1.21269 0.92898 0.99448 1.05620 1.18880 0.91491 0.85521 0.99316 1.86035 1.36788 1.12722 1.88961 1.23281 0.96328 0.85855 1.01955 1.18575 0.94816 0.90302 1.04015 1.20519 0.91457 1.07679 0.92553 1.21128 0.81532 0.74491 0.92078 1.90706 1.56022 1.51067 1.48073 1.45175 1.07381 1.73658 1.07263 1.21335 0.90389 1.01763 0.85542 0.88270 1.24258 1.02875 0.92561 0.98945 0.84572 1.21188 0.92144 0.93517 0.90631 1.46378 1.32595 1.02366 1.53449 1.19454 1.06191 0.94894 1.16019 0.89945 1.25758 1.03257 0.96262 1.00722 1.70100 1.40852 1.02379 1.46476 0.84963 0.78779 0.77916 0.77343 1.18792 1.22101 1.21596 1.21412 0.96149 0.88433 0.87763 1.24255 0.97531 0.98635 0.99292 0.85418 1.20278 0.92145 0.97536 1.03574 0.92278 0.91330 0.86545 0.82840 0.82937 0.86828 0.90939 0.92797 0.84664 0.85349 0.74323 0.91814 0.96874 0.94140 0.97988 0.92046 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.97 10.50 -93.35 -0.98 -7.95 16 3 C 0.08 1.70 6.69 22.49 0.15 1.85 16 4 C -0.17 -3.13 9.03 22.35 0.20 -2.93 16 5 C -0.17 -3.32 9.03 22.36 0.20 -3.11 16 6 C 0.09 2.13 6.66 22.49 0.15 2.28 16 7 O -0.33 -7.19 9.63 -93.31 -0.90 -8.09 16 8 C 0.02 0.27 9.81 113.37 1.11 1.38 16 9 C -0.08 -1.77 4.38 -19.78 -0.09 -1.85 16 10 C -0.08 -1.58 5.55 29.10 0.16 -1.42 16 11 C 0.52 14.52 7.82 87.66 0.69 15.20 16 12 O -0.58 -22.34 15.60 -3.05 -0.05 -22.38 16 13 N -0.68 -17.40 5.56 -442.53 -2.46 -19.86 16 14 C 0.12 4.00 5.97 44.99 0.27 4.27 16 15 H 0.10 4.10 7.40 -2.39 -0.02 4.09 16 16 C -0.17 -5.76 7.05 -9.93 -0.07 -5.83 16 17 H 0.14 3.90 8.14 -2.38 -0.02 3.88 16 18 C 0.15 6.54 7.05 86.53 0.61 7.15 16 19 N -0.62 -33.10 3.45 -678.56 -2.34 -35.44 16 20 C -0.24 -13.52 10.36 84.04 0.87 -12.65 16 21 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 22 C -0.07 -3.85 5.41 84.86 0.46 -3.39 16 23 N -0.95 -58.19 10.84 21.65 0.23 -57.95 16 24 Si 0.98 46.10 29.56 68.60 2.03 48.13 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 C 0.19 9.46 5.91 85.82 0.51 9.97 16 29 C -0.18 -6.61 6.96 -9.93 -0.07 -6.68 16 30 H 0.13 4.14 8.14 -2.39 -0.02 4.12 16 31 C -0.12 -2.71 9.61 22.35 0.21 -2.50 16 32 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 33 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.15 1.90 6.29 -2.91 -0.02 1.88 16 36 H 0.15 2.04 6.29 -2.91 -0.02 2.02 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 39 H 0.05 0.72 7.65 -2.38 -0.02 0.70 16 40 H 0.14 1.69 8.05 -2.39 -0.02 1.67 16 41 H 0.13 1.94 7.69 -2.39 -0.02 1.92 16 42 H 0.42 7.31 8.83 -92.71 -0.82 6.49 16 43 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 46 H 0.00 0.11 8.14 -2.38 -0.02 0.10 16 47 H 0.06 3.45 6.58 -2.39 -0.02 3.43 16 48 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -80.90 396.57 2.19 -78.71 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.17 Total: 21.76 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.48 Total: 3.07 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.57 Total: -113.25 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.93 Total: -38.41 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -80.90 2.19 -78.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960399967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.925 kcal (2) G-P(sol) polarization free energy of solvation -80.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds