Wall clock time and date at job start Sat Apr 11 2020 07:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 116.99752 * 2 1 4 4 C 1.38779 * 120.02678 * 0.25245 * 3 2 1 5 5 C 1.38181 * 120.05235 * 180.29412 * 4 3 2 6 6 C 1.38172 * 120.11031 * 359.72939 * 5 4 3 7 7 C 1.38777 * 120.05569 * 359.97438 * 6 5 4 8 8 O 1.35888 * 120.02996 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00307 * 0.02562 * 8 7 6 10 10 C 1.38630 * 120.02872 * 179.97438 * 3 2 1 11 11 C 1.50704 * 120.05240 * 359.97438 * 10 3 2 12 12 C 1.50701 * 109.46780 * 269.72156 * 11 10 3 13 13 O 1.21280 * 120.00115 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99854 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00186 * 180.02562 * 14 12 11 16 16 H 1.09001 * 115.49098 * 9.61381 * 15 14 12 17 17 C 1.57119 * 116.95967 * 223.00325 * 15 14 12 18 18 H 1.08998 * 119.80241 * 3.77901 * 17 15 14 19 19 C 1.54790 * 118.02265 * 161.36131 * 17 15 14 20 20 N 1.48142 * 104.41509 * 86.47528 * 19 17 15 21 21 C 1.36941 * 127.83913 * 140.37064 * 20 19 17 22 22 H 1.08001 * 120.00294 * 195.57326 * 21 20 19 23 23 C 1.38818 * 119.99817 * 15.57284 * 21 20 19 24 24 N 1.31624 * 120.00001 * 9.17236 * 23 21 20 25 25 Si 1.86793 * 120.00024 * 189.17797 * 23 21 20 26 26 H 1.48493 * 109.47449 * 85.00062 * 25 23 21 27 27 H 1.48497 * 109.46969 * 324.99546 * 25 23 21 28 28 H 1.48500 * 109.47095 * 204.99927 * 25 23 21 29 29 C 1.48144 * 104.32599 * 320.10566 * 20 19 17 30 30 C 1.52994 * 117.44419 * 155.00046 * 15 14 12 31 31 H 1.08998 * 119.54381 * 354.28102 * 30 15 14 32 32 H 1.08998 * 109.47090 * 299.99639 * 1 2 3 33 33 H 1.09000 * 109.47504 * 60.00178 * 1 2 3 34 34 H 1.09007 * 109.47041 * 180.02562 * 1 2 3 35 35 H 1.07994 * 119.97611 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.94433 * 179.70299 * 5 4 3 37 37 H 1.07995 * 119.97760 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47112 * 300.00238 * 9 8 7 39 39 H 1.09003 * 109.46796 * 59.99800 * 9 8 7 40 40 H 1.08998 * 109.47418 * 180.02562 * 9 8 7 41 41 H 1.09001 * 109.46950 * 149.72256 * 11 10 3 42 42 H 1.08997 * 109.47252 * 29.72072 * 11 10 3 43 43 H 0.97006 * 119.99992 * 359.97438 * 14 12 11 44 44 H 1.08999 * 110.53920 * 327.73442 * 19 17 15 45 45 H 1.08997 * 110.46222 * 205.17476 * 19 17 15 46 46 H 0.96996 * 119.99851 * 180.02562 * 24 23 21 47 47 H 1.09003 * 110.40812 * 158.63555 * 29 20 19 48 48 H 1.09006 * 110.41037 * 281.06321 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3751 0.0053 5 6 1.9173 3.6066 -0.0008 6 6 3.2969 3.6822 -0.0066 7 6 4.0567 2.5209 -0.0057 8 8 5.4135 2.5960 -0.0119 9 6 5.9910 3.9030 -0.0186 10 6 3.4303 1.2842 0.0005 11 6 4.2529 0.0214 0.0017 12 6 4.5323 -0.3947 1.4229 13 8 4.1058 0.2690 2.3441 14 7 5.2569 -1.5038 1.6703 15 6 5.5280 -1.9087 3.0519 16 1 4.9786 -1.3611 3.8176 17 6 6.9863 -2.3936 3.3789 18 1 7.7550 -2.3578 2.6070 19 6 7.4333 -2.4063 4.8608 20 7 6.9840 -3.7229 5.3702 21 6 7.6465 -4.5637 6.2243 22 1 7.3324 -5.5925 6.3210 23 6 8.7219 -4.0937 6.9657 24 7 8.9933 -2.8060 6.9879 25 14 9.7839 -5.2888 7.9316 26 1 10.8285 -5.8545 7.0407 27 1 8.9366 -6.3876 8.4609 28 1 10.4308 -4.5745 9.0615 29 6 5.6527 -3.9205 4.7513 30 6 5.8104 -3.3901 3.3100 31 1 5.7110 -4.1062 2.4944 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 0.2121 2.3185 0.0098 36 1 1.3277 4.5114 -0.0016 37 1 3.7845 4.6458 -0.0118 38 1 5.6639 4.4402 -0.9089 39 1 5.6717 4.4459 0.8711 40 1 7.0778 3.8201 -0.0236 41 1 5.1951 0.2012 -0.5162 42 1 3.7037 -0.7705 -0.5075 43 1 5.5983 -2.0344 0.9335 44 1 6.9502 -1.6001 5.4129 45 1 8.5175 -2.3208 4.9325 46 1 9.7449 -2.4776 7.5057 47 1 5.3919 -4.9788 4.7405 48 1 4.8957 -3.3472 5.2867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960824815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:14 Heat of formation + Delta-G solvation = -40.126687 kcal Electronic energy + Delta-G solvation = -30067.352487 eV Core-core repulsion = 25896.358500 eV Total energy + Delta-G solvation = -4170.993987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74964 -40.77533 -39.94174 -39.58399 -37.31528 -36.00748 -34.38131 -33.84889 -32.02985 -30.46990 -29.08694 -28.88429 -28.67805 -27.59919 -27.19880 -23.98606 -22.83924 -22.72827 -21.94119 -21.34946 -20.80875 -19.47090 -18.86576 -18.07734 -17.89860 -17.67296 -17.27592 -16.80391 -16.74557 -16.48887 -16.38878 -15.93607 -15.73293 -15.61390 -15.17622 -14.78085 -14.62662 -14.27471 -14.17812 -13.78699 -13.45935 -13.36985 -13.32664 -13.25410 -13.10601 -12.89486 -12.69889 -12.59085 -12.37104 -12.30268 -12.12269 -12.03592 -11.86440 -11.68291 -11.64013 -11.63054 -11.01169 -10.81842 -10.73082 -9.59410 -9.32641 -9.07427 -8.93766 -7.91907 -5.29765 0.33002 0.47290 1.46413 1.49317 1.57740 1.62144 2.00495 2.04232 2.48510 2.76810 2.78260 2.82413 3.28569 3.56039 3.65116 3.82312 3.93599 3.95774 3.96054 4.06503 4.12754 4.13852 4.27685 4.38055 4.40404 4.42043 4.43910 4.45116 4.51739 4.52535 4.62248 4.74007 4.75244 4.82549 4.89929 4.97599 5.02924 5.26008 5.28171 5.33732 5.41995 5.45540 5.47132 5.55043 5.57713 5.63355 6.15398 6.36360 6.44640 6.60090 6.98824 7.30870 7.66139 8.45199 9.22024 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.002219 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.001759 B =12613.805870 C =13654.749791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.162 3.838 4 C -0.252 4.252 5 C -0.042 4.042 6 C -0.253 4.253 7 C 0.160 3.840 8 O -0.331 6.331 9 C 0.020 3.980 10 C -0.164 4.164 11 C -0.071 4.071 12 C 0.521 3.479 13 O -0.580 6.580 14 N -0.685 5.685 15 C 0.114 3.886 16 H 0.102 0.898 17 C -0.187 4.187 18 H 0.124 0.876 19 C 0.190 3.810 20 N -0.617 5.617 21 C -0.242 4.242 22 H 0.085 0.915 23 C -0.065 4.065 24 N -0.950 5.950 25 Si 0.985 3.015 26 H -0.281 1.281 27 H -0.267 1.267 28 H -0.295 1.295 29 C 0.147 3.853 30 C -0.154 4.154 31 H 0.139 0.861 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.418 0.582 44 H -0.009 1.009 45 H 0.058 0.942 46 H 0.250 0.750 47 H 0.067 0.933 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.450 12.027 -23.579 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.243 6.243 3 C 0.116 3.884 4 C -0.270 4.270 5 C -0.060 4.060 6 C -0.271 4.271 7 C 0.114 3.886 8 O -0.245 6.245 9 C -0.074 4.074 10 C -0.166 4.166 11 C -0.111 4.111 12 C 0.309 3.691 13 O -0.459 6.459 14 N -0.335 5.335 15 C 0.006 3.994 16 H 0.120 0.880 17 C -0.208 4.208 18 H 0.142 0.858 19 C 0.064 3.936 20 N -0.341 5.341 21 C -0.370 4.370 22 H 0.103 0.897 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.812 3.188 26 H -0.208 1.208 27 H -0.191 1.191 28 H -0.222 1.222 29 C 0.021 3.979 30 C -0.175 4.175 31 H 0.156 0.844 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.255 0.745 44 H 0.009 0.991 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -15.361 12.109 -22.755 30.006 hybrid contribution 0.702 -0.172 0.788 1.070 sum -14.659 11.936 -21.967 28.981 Atomic orbital electron populations 1.23355 0.76209 1.05535 1.02338 1.86007 1.23575 1.26619 1.88125 1.18605 0.90880 0.85290 0.93599 1.21413 1.01210 0.91824 1.12593 1.21083 0.93691 0.98057 0.93134 1.21409 0.95434 0.97634 1.12661 1.18654 0.82922 0.93350 0.93648 1.86010 1.17174 1.33161 1.88125 1.23341 0.99952 0.81760 1.02345 1.17955 0.91043 0.93157 1.14419 1.20217 1.02177 0.96424 0.92249 1.21177 0.76312 0.79271 0.92293 1.90670 1.52807 1.54356 1.48095 1.45170 1.54278 1.27276 1.06793 1.22001 0.96622 0.95608 0.85146 0.88030 1.25157 0.91057 1.05820 0.98799 0.85821 1.20820 0.98657 0.86148 0.87951 1.45497 1.15949 1.19744 1.52868 1.19425 1.10386 0.91839 1.15366 0.89719 1.25830 1.01957 0.97651 1.00447 1.70122 1.30836 1.13332 1.45466 0.85008 0.78544 0.77776 0.77451 1.20806 1.19141 1.22194 1.21288 0.87230 0.98966 0.90381 1.24205 1.02443 0.91630 0.99211 0.84374 0.92411 0.90677 0.86529 0.83088 0.82452 0.83260 0.90546 0.92450 0.86758 0.86285 0.85931 0.74504 0.99090 0.92361 0.94103 0.91411 0.96562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.28 9.53 -92.35 -0.88 -8.16 16 3 C 0.16 3.87 6.66 22.49 0.15 4.02 16 4 C -0.25 -4.77 9.04 22.39 0.20 -4.57 16 5 C -0.04 -0.71 10.04 22.24 0.22 -0.49 16 6 C -0.25 -4.95 9.04 22.38 0.20 -4.74 16 7 C 0.16 3.95 6.66 22.49 0.15 4.10 16 8 O -0.33 -7.86 9.54 -92.29 -0.88 -8.74 16 9 C 0.02 0.30 9.81 113.37 1.11 1.41 16 10 C -0.16 -4.26 4.40 -19.67 -0.09 -4.35 16 11 C -0.07 -1.68 5.39 29.10 0.16 -1.52 16 12 C 0.52 16.31 7.82 87.66 0.69 17.00 16 13 O -0.58 -23.97 15.60 -3.03 -0.05 -24.02 16 14 N -0.68 -19.26 5.57 -435.71 -2.43 -21.68 16 15 C 0.11 4.08 6.19 46.44 0.29 4.36 16 16 H 0.10 4.35 7.40 -2.39 -0.02 4.33 16 17 C -0.19 -7.42 7.25 -8.30 -0.06 -7.48 16 18 H 0.12 4.40 8.14 -2.39 -0.02 4.38 16 19 C 0.19 9.96 5.75 86.67 0.50 10.46 16 20 N -0.62 -33.14 3.37 -687.35 -2.32 -35.46 16 21 C -0.24 -13.86 10.35 84.03 0.87 -12.99 16 22 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 23 C -0.07 -3.80 5.40 84.86 0.46 -3.34 16 24 N -0.95 -58.91 10.87 21.65 0.24 -58.68 16 25 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 C 0.15 6.37 7.03 86.54 0.61 6.98 16 30 C -0.15 -5.44 6.91 -9.89 -0.07 -5.51 16 31 H 0.14 3.91 8.14 -2.39 -0.02 3.90 16 32 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 33 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 34 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.15 2.00 6.29 -2.91 -0.02 1.98 16 36 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.15 2.12 6.29 -2.91 -0.02 2.10 16 38 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 39 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.12 2.38 7.53 -2.39 -0.02 2.36 16 42 H 0.12 2.34 7.52 -2.39 -0.02 2.32 16 43 H 0.42 8.45 8.83 -92.70 -0.82 7.63 16 44 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.06 3.39 6.52 -2.39 -0.02 3.38 16 46 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.07 2.69 8.14 -2.39 -0.02 2.68 16 48 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -81.75 395.13 2.38 -79.37 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.17 Total: 24.40 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.50 Total: 4.71 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -4.51 Total: -115.82 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.81 Total: -40.92 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -81.75 2.38 -79.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960824815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.243 kcal (2) G-P(sol) polarization free energy of solvation -81.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds