Wall clock time and date at job start Sat Apr 11 2020 07:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 119.99871 * 2 1 4 4 H 1.08004 * 119.99357 * 201.92230 * 3 2 1 5 5 C 1.38808 * 120.00111 * 21.91910 * 3 2 1 6 6 N 1.31618 * 120.00172 * 11.03391 * 5 3 2 7 7 Si 1.86802 * 119.99765 * 191.03348 * 5 3 2 8 8 H 1.48494 * 109.47194 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46992 * 120.00278 * 7 5 3 10 10 H 1.48497 * 109.47048 * 239.99773 * 7 5 3 11 11 C 1.46495 * 119.99742 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63889 * 178.31250 * 11 2 1 13 13 C 1.55160 * 110.72161 * 301.45631 * 11 2 1 14 14 C 1.54912 * 101.58091 * 153.86841 * 13 11 2 15 15 N 1.47429 * 104.83013 * 322.98712 * 14 13 11 16 16 C 1.34773 * 125.64697 * 204.09435 * 15 14 13 17 17 O 1.21289 * 120.00199 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00125 * 0.02562 * 16 15 14 19 19 C 1.53006 * 109.47440 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.73440 * 54.39343 * 19 18 16 21 21 C 1.53462 * 109.71007 * 175.00300 * 19 18 16 22 22 O 1.43186 * 108.24036 * 179.42455 * 21 19 18 23 23 C 1.36109 * 116.69922 * 313.76904 * 22 21 19 24 24 C 1.38702 * 119.39645 * 197.25770 * 23 22 21 25 25 C 1.38191 * 120.06835 * 180.13966 * 24 23 22 26 26 C 1.38255 * 120.11276 * 0.03082 * 25 24 23 27 27 C 1.38190 * 120.11308 * 359.91956 * 26 25 24 28 28 C 1.38707 * 120.06646 * 0.02562 * 27 26 25 29 29 O 1.36112 * 119.39887 * 180.33019 * 28 27 26 30 30 C 1.47021 * 108.70235 * 24.36120 * 15 14 13 31 31 H 1.08998 * 109.47523 * 275.07545 * 1 2 3 32 32 H 1.09004 * 109.46906 * 35.07979 * 1 2 3 33 33 H 1.09000 * 109.47145 * 155.07153 * 1 2 3 34 34 H 0.97004 * 119.99734 * 179.97438 * 6 5 3 35 35 H 1.08994 * 111.00432 * 35.79226 * 13 11 2 36 36 H 1.08998 * 110.99985 * 271.93806 * 13 11 2 37 37 H 1.09000 * 110.36342 * 204.15433 * 14 13 11 38 38 H 1.08995 * 110.37032 * 81.82855 * 14 13 11 39 39 H 1.08998 * 109.46869 * 60.00401 * 18 16 15 40 40 H 1.08995 * 109.47391 * 300.00072 * 18 16 15 41 41 H 1.08995 * 109.71115 * 59.73882 * 21 19 18 42 42 H 1.08996 * 109.71060 * 299.10757 * 21 19 18 43 43 H 1.08002 * 119.96690 * 0.15225 * 24 23 22 44 44 H 1.07997 * 119.94614 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.94361 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.97198 * 179.97438 * 27 26 25 47 47 H 1.09001 * 109.88382 * 118.13095 * 30 15 14 48 48 H 1.09005 * 109.87589 * 239.29144 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1711 1.2196 -0.3492 5 6 1.5309 2.3446 0.4487 6 7 0.3742 2.2736 1.0727 7 14 2.3399 4.0046 0.1670 8 1 3.6246 3.8134 -0.5526 9 1 1.4404 4.8620 -0.6460 10 1 2.5973 4.6581 1.4754 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.8161 -2.1222 1.2389 14 6 2.1008 -3.5566 0.7276 15 7 1.6924 -3.5403 -0.6889 16 6 1.3251 -4.6161 -1.4128 17 8 1.0075 -4.4847 -2.5760 18 6 1.3090 -5.9824 -0.7772 19 6 0.8579 -7.0193 -1.8079 20 1 1.4872 -6.9538 -2.6955 21 6 0.9588 -8.4267 -1.2045 22 8 0.5175 -9.3688 -2.1884 23 6 -0.6364 -9.0710 -2.8460 24 6 -1.3075 -10.0730 -3.5312 25 6 -2.4786 -9.7855 -4.2060 26 6 -2.9843 -8.4988 -4.2007 27 6 -2.3212 -7.4961 -3.5192 28 6 -1.1458 -7.7781 -2.8388 29 8 -0.5074 -6.7816 -2.1664 30 6 1.7583 -2.1570 -1.1826 31 1 -0.3634 0.0909 1.0236 32 1 -0.3633 0.8410 -0.5906 33 1 -0.3633 -0.9319 -0.4331 34 1 -0.0580 3.0833 1.3866 35 1 0.7625 -1.9986 1.4891 36 1 2.4498 -1.8784 2.0915 37 1 1.5085 -4.2824 1.2848 38 1 3.1628 -3.7862 0.8136 39 1 0.6171 -5.9831 0.0650 40 1 2.3101 -6.2312 -0.4252 41 1 0.3246 -8.4940 -0.3206 42 1 1.9931 -8.6367 -0.9324 43 1 -0.9144 -11.0789 -3.5372 44 1 -2.9998 -10.5673 -4.7386 45 1 -3.8996 -8.2770 -4.7294 46 1 -2.7180 -6.4916 -3.5168 47 1 2.4854 -2.0864 -1.9916 48 1 0.7762 -1.8423 -1.5356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971611692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:21 Heat of formation + Delta-G solvation = -44.959351 kcal Electronic energy + Delta-G solvation = -30312.553468 eV Core-core repulsion = 26141.349921 eV Total energy + Delta-G solvation = -4171.203547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52367 -39.82304 -38.06177 -37.58277 -37.15316 -34.82387 -33.21042 -31.64130 -30.86363 -29.89008 -29.43681 -28.26764 -27.03548 -26.07217 -24.38596 -23.25635 -22.82372 -22.31983 -20.88791 -19.52563 -19.20270 -18.75621 -17.79904 -17.11642 -16.99915 -16.87581 -15.98198 -15.59455 -15.41831 -15.21082 -14.88424 -14.59844 -14.46897 -14.17883 -14.01014 -13.91820 -13.51088 -13.36065 -13.11799 -12.81874 -12.48751 -12.37543 -12.21103 -12.08309 -11.99648 -11.72404 -11.43711 -11.42373 -11.16406 -10.98504 -10.82841 -10.64164 -10.59532 -10.46822 -10.25659 -9.92104 -9.89688 -9.67185 -8.84982 -8.61499 -8.36429 -8.25395 -6.85881 -5.78482 -3.25621 1.08909 1.11823 2.71135 2.80716 2.94797 3.10795 3.34562 3.42152 3.43848 3.52941 3.90912 4.31868 4.35610 4.43666 4.51894 4.65884 4.77937 4.86394 4.92430 4.98707 5.05699 5.08302 5.20698 5.23117 5.27940 5.33294 5.42522 5.50192 5.53326 5.66349 5.73580 5.86390 5.93650 5.96775 5.99808 6.25909 6.27477 6.35678 6.42237 6.51762 6.60747 6.72524 6.79467 6.83902 7.25054 7.36270 7.67607 7.74384 7.76538 8.29834 8.33901 9.16466 9.78584 10.26687 11.26218 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002061 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.514611 B =13583.247637 C =14285.893314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.588 5.588 3 C -0.259 4.259 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.098 3.902 15 N -0.613 5.613 16 C 0.525 3.475 17 O -0.534 6.534 18 C -0.130 4.130 19 C 0.069 3.931 20 H 0.094 0.906 21 C 0.026 3.974 22 O -0.307 6.307 23 C 0.042 3.958 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.114 4.114 28 C 0.062 3.938 29 O -0.289 6.289 30 C 0.087 3.913 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.000 1.000 34 H 0.253 0.747 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.060 0.940 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -25.181 -3.035 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.308 5.308 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.026 4.026 15 N -0.347 5.347 16 C 0.312 3.688 17 O -0.411 6.411 18 C -0.170 4.170 19 C 0.012 3.988 20 H 0.111 0.889 21 C -0.050 4.050 22 O -0.221 6.221 23 C -0.002 4.002 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.132 4.132 28 C 0.016 3.984 29 O -0.203 6.203 30 C -0.037 4.037 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.079 0.921 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.110 -24.951 -3.604 25.234 hybrid contribution 0.478 1.063 0.191 1.181 sum -0.633 -23.888 -3.413 24.139 Atomic orbital electron populations 1.20817 0.82314 0.95664 0.99557 1.43888 1.01963 0.99886 1.85074 1.19274 0.97759 0.85145 1.36608 0.91124 1.25030 0.97558 0.98599 0.98369 1.70086 1.17311 1.27024 1.40703 0.86141 0.78681 0.84033 0.77407 1.20276 1.21577 1.21695 1.21290 0.96292 0.85995 0.90169 0.90362 1.23387 1.02956 0.92498 1.00338 1.22396 0.99312 0.99586 0.81267 1.48501 1.65968 1.07838 1.12410 1.19865 0.77554 0.85027 0.86305 1.90740 1.47991 1.85737 1.16633 1.21651 1.04252 0.92251 0.98882 1.22830 0.82948 0.93977 0.99023 0.88859 1.23687 1.02742 0.88082 0.90444 1.86296 1.37496 1.46689 1.51646 1.18942 0.89481 0.92508 0.99299 1.20409 0.95251 0.98011 0.99689 1.20888 0.95756 0.97067 1.00368 1.20934 1.00254 0.92500 0.99645 1.20537 0.94430 1.00841 0.97429 1.19010 0.95469 0.86194 0.97713 1.86434 1.24695 1.38424 1.70722 1.22760 1.02390 0.79661 0.98911 0.94998 0.93612 0.98120 0.93710 0.90585 0.90325 0.91389 0.91532 0.87569 0.86605 0.90306 0.85864 0.85007 0.85211 0.85122 0.84671 0.92149 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.66 59.85 0.46 4.37 16 2 N -0.59 -14.18 2.94 -171.38 -0.50 -14.68 16 3 C -0.26 -6.87 9.63 -15.06 -0.15 -7.02 16 4 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 5 C 0.00 0.08 5.14 -17.43 -0.09 -0.01 16 6 N -0.91 -25.85 10.54 55.49 0.58 -25.27 16 7 Si 0.91 21.46 29.57 -169.99 -5.03 16.44 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.32 3.43 -66.09 -0.23 3.09 16 12 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 13 C -0.15 -2.41 6.65 -24.58 -0.16 -2.57 16 14 C 0.10 1.19 6.69 -2.52 -0.02 1.17 16 15 N -0.61 -9.33 3.33 -170.51 -0.57 -9.90 16 16 C 0.53 7.97 7.74 -10.99 -0.09 7.88 16 17 O -0.53 -10.38 15.80 -7.31 -0.12 -10.50 16 18 C -0.13 -1.29 4.44 -27.88 -0.12 -1.41 16 19 C 0.07 0.78 2.55 -26.49 -0.07 0.71 16 20 H 0.09 1.16 7.94 -51.93 -0.41 0.75 16 21 C 0.03 0.22 6.56 37.40 0.25 0.47 16 22 O -0.31 -3.43 10.42 -32.87 -0.34 -3.77 16 23 C 0.04 0.51 6.49 -39.14 -0.25 0.25 16 24 C -0.11 -1.14 9.96 -39.43 -0.39 -1.53 16 25 C -0.12 -1.06 10.04 -39.59 -0.40 -1.46 16 26 C -0.12 -1.08 10.04 -39.59 -0.40 -1.47 16 27 C -0.11 -1.35 9.96 -39.43 -0.39 -1.74 16 28 C 0.06 0.81 6.49 -39.14 -0.25 0.56 16 29 O -0.29 -4.13 9.39 -43.78 -0.41 -4.54 16 30 C 0.09 1.59 6.40 -3.06 -0.02 1.57 16 31 H 0.03 0.83 7.38 -51.93 -0.38 0.45 16 32 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 33 H 0.00 0.01 6.28 -51.93 -0.33 -0.32 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.08 1.35 7.28 -51.93 -0.38 0.97 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.91 7.85 -51.93 -0.41 0.51 16 40 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.07 1.52 6.13 -51.93 -0.32 1.21 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -33.74 385.88 -10.06 -43.81 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.17 Total: -0.25 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.32 Total: 2.86 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.49 Total: -49.85 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.87 Total: -18.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.74 -10.06 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971611692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.154 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds