Wall clock time and date at job start Sat Apr 11 2020 07:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 119.99871 * 2 1 4 4 H 1.08004 * 119.99357 * 201.92230 * 3 2 1 5 5 C 1.38808 * 120.00111 * 21.91910 * 3 2 1 6 6 N 1.31618 * 120.00172 * 11.03391 * 5 3 2 7 7 Si 1.86802 * 119.99765 * 191.03348 * 5 3 2 8 8 H 1.48494 * 109.47194 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46992 * 120.00278 * 7 5 3 10 10 H 1.48497 * 109.47048 * 239.99773 * 7 5 3 11 11 C 1.46495 * 119.99742 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63889 * 178.31250 * 11 2 1 13 13 C 1.55160 * 110.72161 * 301.45631 * 11 2 1 14 14 C 1.54912 * 101.58091 * 153.86841 * 13 11 2 15 15 N 1.47429 * 104.83013 * 322.98712 * 14 13 11 16 16 C 1.34773 * 125.64697 * 204.09435 * 15 14 13 17 17 O 1.21289 * 120.00199 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00125 * 0.02562 * 16 15 14 19 19 C 1.53006 * 109.47440 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.73440 * 54.39343 * 19 18 16 21 21 C 1.53462 * 109.71007 * 175.00300 * 19 18 16 22 22 O 1.43186 * 108.24036 * 179.42455 * 21 19 18 23 23 C 1.36109 * 116.69922 * 313.76904 * 22 21 19 24 24 C 1.38702 * 119.39645 * 197.25770 * 23 22 21 25 25 C 1.38191 * 120.06835 * 180.13966 * 24 23 22 26 26 C 1.38255 * 120.11276 * 0.03082 * 25 24 23 27 27 C 1.38190 * 120.11308 * 359.91956 * 26 25 24 28 28 C 1.38707 * 120.06646 * 0.02562 * 27 26 25 29 29 O 1.36112 * 119.39887 * 180.33019 * 28 27 26 30 30 C 1.47021 * 108.70235 * 24.36120 * 15 14 13 31 31 H 1.08998 * 109.47523 * 275.07545 * 1 2 3 32 32 H 1.09004 * 109.46906 * 35.07979 * 1 2 3 33 33 H 1.09000 * 109.47145 * 155.07153 * 1 2 3 34 34 H 0.97004 * 119.99734 * 179.97438 * 6 5 3 35 35 H 1.08994 * 111.00432 * 35.79226 * 13 11 2 36 36 H 1.08998 * 110.99985 * 271.93806 * 13 11 2 37 37 H 1.09000 * 110.36342 * 204.15433 * 14 13 11 38 38 H 1.08995 * 110.37032 * 81.82855 * 14 13 11 39 39 H 1.08998 * 109.46869 * 60.00401 * 18 16 15 40 40 H 1.08995 * 109.47391 * 300.00072 * 18 16 15 41 41 H 1.08995 * 109.71115 * 59.73882 * 21 19 18 42 42 H 1.08996 * 109.71060 * 299.10757 * 21 19 18 43 43 H 1.08002 * 119.96690 * 0.15225 * 24 23 22 44 44 H 1.07997 * 119.94614 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.94361 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.97198 * 179.97438 * 27 26 25 47 47 H 1.09001 * 109.88382 * 118.13095 * 30 15 14 48 48 H 1.09005 * 109.87589 * 239.29144 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1711 1.2196 -0.3492 5 6 1.5309 2.3446 0.4487 6 7 0.3742 2.2736 1.0727 7 14 2.3399 4.0046 0.1670 8 1 3.6246 3.8134 -0.5526 9 1 1.4404 4.8620 -0.6460 10 1 2.5973 4.6581 1.4754 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.8161 -2.1222 1.2389 14 6 2.1008 -3.5566 0.7276 15 7 1.6924 -3.5403 -0.6889 16 6 1.3251 -4.6161 -1.4128 17 8 1.0075 -4.4847 -2.5760 18 6 1.3090 -5.9824 -0.7772 19 6 0.8579 -7.0193 -1.8079 20 1 1.4872 -6.9538 -2.6955 21 6 0.9588 -8.4267 -1.2045 22 8 0.5175 -9.3688 -2.1884 23 6 -0.6364 -9.0710 -2.8460 24 6 -1.3075 -10.0730 -3.5312 25 6 -2.4786 -9.7855 -4.2060 26 6 -2.9843 -8.4988 -4.2007 27 6 -2.3212 -7.4961 -3.5192 28 6 -1.1458 -7.7781 -2.8388 29 8 -0.5074 -6.7816 -2.1664 30 6 1.7583 -2.1570 -1.1826 31 1 -0.3634 0.0909 1.0236 32 1 -0.3633 0.8410 -0.5906 33 1 -0.3633 -0.9319 -0.4331 34 1 -0.0580 3.0833 1.3866 35 1 0.7625 -1.9986 1.4891 36 1 2.4498 -1.8784 2.0915 37 1 1.5085 -4.2824 1.2848 38 1 3.1628 -3.7862 0.8136 39 1 0.6171 -5.9831 0.0650 40 1 2.3101 -6.2312 -0.4252 41 1 0.3246 -8.4940 -0.3206 42 1 1.9931 -8.6367 -0.9324 43 1 -0.9144 -11.0789 -3.5372 44 1 -2.9998 -10.5673 -4.7386 45 1 -3.8996 -8.2770 -4.7294 46 1 -2.7180 -6.4916 -3.5168 47 1 2.4854 -2.0864 -1.9916 48 1 0.7762 -1.8423 -1.5356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971611692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:20 Heat of formation + Delta-G solvation = -65.669843 kcal Electronic energy + Delta-G solvation = -30313.451542 eV Core-core repulsion = 26141.349921 eV Total energy + Delta-G solvation = -4172.101622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33073 -41.04912 -39.13987 -38.53876 -38.16721 -36.55221 -34.12829 -33.36376 -31.63099 -31.35428 -30.34881 -29.48688 -28.15603 -27.96706 -25.53829 -24.52257 -23.79943 -23.59215 -21.66727 -20.93258 -20.42465 -19.69458 -18.97565 -18.59643 -18.02002 -17.84991 -17.46470 -16.62867 -16.58885 -16.17122 -16.00109 -15.66236 -15.48116 -15.39052 -15.07696 -14.91017 -14.80468 -14.72906 -14.45324 -14.25306 -13.85125 -13.58118 -13.25442 -13.05669 -12.95299 -12.85896 -12.80482 -12.72924 -12.56671 -12.38790 -12.25216 -12.14435 -12.04860 -11.94704 -11.82970 -11.49167 -11.42768 -10.93393 -10.66943 -9.64853 -9.63633 -9.06595 -8.84636 -7.85339 -5.33965 0.29993 0.33348 1.45588 1.47853 1.57559 1.60811 1.89466 2.05194 2.25399 2.49649 2.74856 3.12376 3.28390 3.46719 3.54750 3.57373 3.73673 3.81410 3.88984 4.08497 4.13984 4.24392 4.27084 4.28972 4.35879 4.38298 4.41525 4.47459 4.48102 4.61869 4.64885 4.69401 4.76912 4.90251 4.92351 5.01229 5.16084 5.20015 5.22905 5.26276 5.34064 5.40294 5.51265 5.61654 5.67380 5.72668 5.94973 6.29019 6.43416 6.56824 7.10414 7.14638 7.81578 8.26262 9.18587 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002061 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.514611 B =13583.247637 C =14285.893314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.605 5.605 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.265 1.265 9 H -0.296 1.296 10 H -0.290 1.290 11 C 0.165 3.835 12 H 0.085 0.915 13 C -0.144 4.144 14 C 0.106 3.894 15 N -0.614 5.614 16 C 0.517 3.483 17 O -0.588 6.588 18 C -0.116 4.116 19 C 0.062 3.938 20 H 0.070 0.930 21 C 0.030 3.970 22 O -0.317 6.317 23 C 0.028 3.972 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.139 4.139 28 C 0.031 3.969 29 O -0.320 6.320 30 C 0.098 3.902 31 H 0.011 0.989 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.248 0.752 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.165 0.835 41 H 0.092 0.908 42 H 0.162 0.838 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.156 0.844 46 H 0.124 0.876 47 H 0.053 0.947 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -28.300 -2.104 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.327 5.327 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.189 1.189 9 H -0.223 1.223 10 H -0.217 1.217 11 C 0.057 3.943 12 H 0.103 0.897 13 C -0.184 4.184 14 C -0.015 4.015 15 N -0.348 5.348 16 C 0.308 3.692 17 O -0.468 6.468 18 C -0.155 4.155 19 C 0.005 3.995 20 H 0.088 0.912 21 C -0.045 4.045 22 O -0.232 6.232 23 C -0.017 4.017 24 C -0.139 4.139 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.158 4.158 28 C -0.014 4.014 29 O -0.235 6.235 30 C -0.027 4.027 31 H 0.029 0.971 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.110 0.890 42 H 0.180 0.820 43 H 0.170 0.830 44 H 0.183 0.817 45 H 0.174 0.826 46 H 0.142 0.858 47 H 0.071 0.929 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.384 -28.121 -2.650 28.249 hybrid contribution 0.013 1.972 -0.187 1.981 sum 0.398 -26.149 -2.837 26.306 Atomic orbital electron populations 1.20426 0.83097 0.94975 0.97641 1.44055 1.01838 1.01258 1.85501 1.19623 0.97953 0.86291 1.35443 0.90574 1.25794 0.98336 1.01877 0.98861 1.70242 1.18739 1.27365 1.42174 0.85145 0.78042 0.79854 0.77036 1.18917 1.22284 1.21668 1.21495 0.96078 0.84601 0.92135 0.89708 1.23227 1.01769 0.94460 0.98984 1.22592 1.02158 0.97644 0.79126 1.48595 1.66017 1.06429 1.13762 1.20890 0.75921 0.86645 0.85774 1.90721 1.50128 1.86684 1.19298 1.21753 1.07488 0.87918 0.98361 1.22981 0.81435 0.96274 0.98765 0.91247 1.23935 1.05147 0.85642 0.89786 1.86264 1.37232 1.47452 1.52274 1.19187 0.90006 0.92447 1.00028 1.20809 0.95480 0.98545 0.99031 1.21324 0.95170 0.97453 0.99310 1.21275 1.00770 0.92343 0.98796 1.20736 0.95006 1.01271 0.98741 1.19313 0.96277 0.86829 0.98978 1.86382 1.26165 1.39691 1.71293 1.22345 1.00107 0.81928 0.98362 0.97097 0.96835 0.96529 0.94279 0.92783 0.89135 0.87604 0.87968 0.85416 0.81753 0.89014 0.82039 0.82978 0.81741 0.82637 0.85806 0.92895 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.34 7.66 127.77 0.98 10.31 16 2 N -0.60 -29.83 2.94 -696.12 -2.05 -31.88 16 3 C -0.26 -14.16 9.63 84.03 0.81 -13.35 16 4 H 0.08 3.93 7.82 -2.91 -0.02 3.90 16 5 C -0.05 -2.98 5.14 84.86 0.44 -2.55 16 6 N -0.94 -55.22 10.54 21.65 0.23 -54.99 16 7 Si 0.97 44.78 29.57 68.60 2.03 46.81 16 8 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 C 0.17 6.28 3.43 46.19 0.16 6.44 16 12 H 0.08 3.10 7.92 -2.39 -0.02 3.08 16 13 C -0.14 -4.33 6.65 31.99 0.21 -4.12 16 14 C 0.11 2.17 6.69 86.86 0.58 2.75 16 15 N -0.61 -17.70 3.33 -811.75 -2.70 -20.40 16 16 C 0.52 15.15 7.74 87.66 0.68 15.83 16 17 O -0.59 -23.61 15.80 9.24 0.15 -23.46 16 18 C -0.12 -1.93 4.44 29.85 0.13 -1.80 16 19 C 0.06 1.32 2.55 30.75 0.08 1.40 16 20 H 0.07 1.76 7.94 -2.38 -0.02 1.74 16 21 C 0.03 0.42 6.56 72.14 0.47 0.89 16 22 O -0.32 -6.59 10.42 -82.56 -0.86 -7.45 16 23 C 0.03 0.66 6.49 22.56 0.15 0.80 16 24 C -0.12 -2.17 9.96 22.37 0.22 -1.95 16 25 C -0.11 -1.72 10.04 22.26 0.22 -1.50 16 26 C -0.11 -2.02 10.04 22.26 0.22 -1.79 16 27 C -0.14 -3.42 9.96 22.37 0.22 -3.20 16 28 C 0.03 0.84 6.49 22.56 0.15 0.99 16 29 O -0.32 -9.40 9.39 -72.18 -0.68 -10.08 16 30 C 0.10 3.62 6.40 86.73 0.56 4.18 16 31 H 0.01 0.59 7.38 -2.39 -0.02 0.57 16 32 H 0.01 0.73 7.21 -2.38 -0.02 0.71 16 33 H 0.02 0.76 6.28 -2.39 -0.01 0.75 16 34 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.05 1.87 7.28 -2.39 -0.02 1.86 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.11 1.47 7.48 -2.39 -0.02 1.45 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.13 1.65 7.85 -2.39 -0.02 1.63 16 40 H 0.17 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.04 1.70 6.13 -2.38 -0.01 1.68 16 Total: -1.00 -79.97 385.88 3.36 -76.61 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.96 Total: 11.50 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.28 Total: 13.33 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -4.52 Total: -107.27 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.39 Total: -40.99 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -79.97 3.36 -76.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971611692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.944 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds