Wall clock time and date at job start Sat Apr 11 2020 07:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35706 * 117.00475 * 2 1 4 4 C 1.38997 * 119.91866 * 180.02562 * 3 2 1 5 5 C 1.37692 * 120.09282 * 179.97438 * 4 3 2 6 6 C 1.39733 * 119.91353 * 0.02562 * 5 4 3 7 7 C 1.47599 * 120.09245 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99553 * 340.17305 * 7 6 5 9 9 N 1.34772 * 120.00621 * 160.17695 * 7 6 5 10 10 C 1.47486 * 125.66026 * 354.28149 * 9 7 6 11 11 C 1.55021 * 104.89491 * 204.01089 * 10 9 7 12 12 C 1.54516 * 101.52646 * 323.61986 * 11 10 9 13 13 C 1.47191 * 125.66595 * 174.27283 * 9 7 6 14 14 C 1.52074 * 109.88021 * 153.10806 * 12 11 10 15 15 N 1.47302 * 108.63444 * 72.27880 * 14 12 11 16 16 C 1.36928 * 121.06831 * 229.32681 * 15 14 12 17 17 H 1.08005 * 120.00187 * 27.13022 * 16 15 14 18 18 C 1.38811 * 120.00249 * 207.13574 * 16 15 14 19 19 N 1.31623 * 119.99878 * 16.94785 * 18 16 15 20 20 Si 1.86799 * 120.00204 * 196.94978 * 18 16 15 21 21 H 1.48503 * 109.47363 * 265.01306 * 20 18 16 22 22 H 1.48503 * 109.47490 * 145.01379 * 20 18 16 23 23 H 1.48501 * 109.47198 * 25.01288 * 20 18 16 24 24 C 1.47170 * 117.86566 * 49.05064 * 15 14 12 25 25 C 1.53268 * 108.55637 * 309.14969 * 24 15 14 26 26 O 1.42069 * 110.33256 * 276.06614 * 12 11 10 27 27 C 1.39733 * 119.82244 * 0.26822 * 6 5 4 28 28 C 1.37709 * 119.90910 * 359.43209 * 27 6 5 29 29 H 1.09006 * 109.46858 * 60.00478 * 1 2 3 30 30 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47152 * 300.01037 * 1 2 3 32 32 H 1.08001 * 119.95078 * 359.97262 * 4 3 2 33 33 H 1.08009 * 120.04616 * 180.02562 * 5 4 3 34 34 H 1.09002 * 110.34883 * 322.86342 * 10 9 7 35 35 H 1.08998 * 110.35675 * 85.04157 * 10 9 7 36 36 H 1.08998 * 111.01247 * 205.56188 * 11 10 9 37 37 H 1.09003 * 111.01496 * 81.68470 * 11 10 9 38 38 H 1.08998 * 109.90756 * 59.13436 * 13 9 7 39 39 H 1.09003 * 110.06286 * 297.96065 * 13 9 7 40 40 H 1.08999 * 109.61844 * 312.44072 * 14 12 11 41 41 H 1.09004 * 109.50102 * 192.04521 * 14 12 11 42 42 H 0.97006 * 119.99678 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.62295 * 68.87398 * 24 15 14 44 44 H 1.09003 * 109.62309 * 189.24248 * 24 15 14 45 45 H 1.08998 * 109.51478 * 172.81402 * 25 24 15 46 46 H 1.09004 * 109.51718 * 292.96716 * 25 24 15 47 47 H 1.07997 * 120.04658 * 179.72509 * 27 6 5 48 48 H 1.07996 * 119.95391 * 180.27799 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4334 1.2798 -0.0005 5 6 4.0623 2.5046 -0.0011 6 6 3.3032 3.6778 -0.0005 7 6 3.9732 4.9929 -0.0017 8 8 5.1323 5.0849 0.3542 9 7 3.3005 6.0918 -0.3970 10 6 1.9385 6.1090 -0.9625 11 6 1.8685 7.4158 -1.7934 12 6 2.7102 8.3786 -0.9261 13 6 3.8030 7.4739 -0.3359 14 6 3.3243 9.4600 -1.8013 15 7 2.2590 10.3862 -2.2222 16 6 2.1112 10.7431 -3.5359 17 1 2.4383 10.0733 -4.3175 18 6 1.5411 11.9657 -3.8631 19 7 1.4488 12.9131 -2.9541 20 14 0.9048 12.2663 -5.5935 21 1 1.9553 12.9419 -6.3968 22 1 -0.3034 13.1277 -5.5340 23 1 0.5567 10.9684 -6.2254 24 6 1.3548 10.9108 -1.1864 25 6 0.8136 9.7326 -0.3690 26 8 1.9101 8.9434 0.1030 27 6 1.9079 3.6026 0.0062 28 6 1.2864 2.3737 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 4.0194 0.3726 -0.0005 33 1 5.1410 2.5587 -0.0019 34 1 1.7839 5.2423 -1.6052 35 1 1.1966 6.1252 -0.1640 36 1 0.8407 7.7676 -1.8827 37 1 2.3199 7.2789 -2.7760 38 1 4.7164 7.5631 -0.9240 39 1 3.9989 7.7552 0.6988 40 1 3.7824 9.0042 -2.6791 41 1 4.0794 10.0030 -1.2328 42 1 1.0500 13.7673 -3.1827 43 1 1.9021 11.5895 -0.5322 44 1 0.5285 11.4434 -1.6573 45 1 0.2444 10.1098 0.4805 46 1 0.1678 9.1195 -0.9976 47 1 1.3176 4.5070 0.0112 48 1 0.2081 2.3148 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972650456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:55 Heat of formation + Delta-G solvation = -36.568432 kcal Electronic energy + Delta-G solvation = -30912.146075 eV Core-core repulsion = 26741.306385 eV Total energy + Delta-G solvation = -4170.839690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87665 -40.10648 -38.91359 -37.22399 -36.25159 -34.48029 -32.29366 -31.40298 -30.98376 -30.35658 -29.74814 -28.04758 -27.38962 -25.70972 -24.26253 -23.27111 -22.76288 -22.29852 -21.39054 -19.83692 -18.93400 -18.38072 -17.51260 -17.01341 -16.61586 -16.25626 -16.11562 -15.65064 -15.17524 -15.11388 -14.78543 -14.64639 -14.23297 -14.07487 -13.84745 -13.66954 -13.51853 -13.16037 -13.06620 -12.92748 -12.80814 -12.60939 -12.32643 -12.19827 -12.15412 -11.42918 -11.37821 -11.25228 -11.17525 -10.97001 -10.86503 -10.69235 -10.32507 -10.31171 -10.05763 -9.89958 -9.58572 -9.36677 -9.09760 -8.69988 -8.57120 -8.47488 -6.77821 -5.89134 -3.32992 0.71035 1.03584 2.74604 2.83196 2.95794 3.30366 3.38217 3.39490 3.61724 4.10837 4.35913 4.36125 4.46514 4.52294 4.65135 4.72905 4.73467 4.92150 4.98651 5.05019 5.09669 5.12940 5.27993 5.29748 5.34012 5.42644 5.51231 5.66361 5.72338 5.80577 5.85620 5.90571 5.94313 5.95447 6.06559 6.13662 6.23632 6.31763 6.33427 6.36185 6.40638 6.47299 6.68369 6.95762 7.04822 7.45632 7.51839 7.67109 7.85000 8.16180 8.28532 9.06367 9.68920 10.26967 11.19150 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002456 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.681009 B =11399.766810 C =11991.939592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.149 3.851 4 C -0.162 4.162 5 C -0.021 4.021 6 C -0.166 4.166 7 C 0.575 3.425 8 O -0.543 6.543 9 N -0.609 5.609 10 C 0.096 3.904 11 C -0.148 4.148 12 C 0.096 3.904 13 C 0.125 3.875 14 C 0.130 3.870 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.036 3.964 26 O -0.376 6.376 27 C -0.059 4.059 28 C -0.218 4.218 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.028 0.972 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.147 0.853 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -22.079 6.077 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.103 3.897 4 C -0.181 4.181 5 C -0.040 4.040 6 C -0.169 4.169 7 C 0.366 3.634 8 O -0.422 6.422 9 N -0.342 5.342 10 C -0.026 4.026 11 C -0.186 4.186 12 C 0.054 3.946 13 C 0.003 3.997 14 C 0.003 3.997 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.014 3.986 25 C -0.041 4.041 26 O -0.295 6.295 27 C -0.077 4.077 28 C -0.237 4.237 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.165 0.835 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.324 -22.123 6.444 23.281 hybrid contribution -0.844 0.557 -1.108 1.500 sum -4.168 -21.565 5.335 22.603 Atomic orbital electron populations 1.23123 0.77980 1.04185 1.01724 1.86038 1.21766 1.26981 1.88020 1.19327 0.92450 0.84209 0.93755 1.20379 0.91237 0.98662 1.07774 1.21060 1.00606 0.89899 0.92444 1.19787 0.93739 0.93387 1.10003 1.17813 0.85433 0.82883 0.77314 1.90780 1.16355 1.86023 1.49012 1.48403 1.16947 1.06528 1.62315 1.22748 0.83656 0.99475 0.96754 1.23268 1.03007 0.93464 0.98862 1.22168 0.90899 0.92995 0.88507 1.21801 0.96368 0.79077 1.02472 1.21251 0.91449 0.90880 0.96072 1.44044 1.30384 1.52414 1.04557 1.19137 1.38036 0.98875 0.82252 0.91454 1.25060 1.02044 0.94843 0.97574 1.70038 1.47106 1.03851 1.33521 0.86272 0.78447 0.77809 0.84193 1.21380 1.21508 1.20364 1.21415 0.95407 0.91947 0.89868 1.23414 0.88126 0.93991 0.98614 1.87683 1.42546 1.67703 1.31613 1.21863 0.93851 0.98517 0.93469 1.21210 1.00335 0.91990 1.10119 0.92291 0.88063 0.92354 0.84525 0.84033 0.90312 0.90882 0.88773 0.89650 0.89779 0.90290 0.91657 0.95387 0.93500 0.95362 0.88842 0.89925 0.93625 0.83538 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.77 10.48 -18.82 -0.20 -2.97 16 3 C 0.15 1.44 6.70 -39.02 -0.26 1.18 16 4 C -0.16 -1.59 9.97 -39.50 -0.39 -1.99 16 5 C -0.02 -0.24 9.58 -39.22 -0.38 -0.61 16 6 C -0.17 -2.07 5.75 -104.96 -0.60 -2.68 16 7 C 0.58 8.79 7.68 -12.44 -0.10 8.70 16 8 O -0.54 -9.95 16.85 5.28 0.09 -9.86 16 9 N -0.61 -8.87 3.33 -171.88 -0.57 -9.44 16 10 C 0.10 1.18 4.95 -2.44 -0.01 1.17 16 11 C -0.15 -2.19 5.90 -24.87 -0.15 -2.33 16 12 C 0.10 1.64 0.83 -89.96 -0.07 1.56 16 13 C 0.13 1.99 6.25 -3.33 -0.02 1.97 16 14 C 0.13 2.63 5.23 -4.08 -0.02 2.61 16 15 N -0.59 -13.99 2.94 -172.44 -0.51 -14.50 16 16 C -0.25 -6.59 9.65 -15.06 -0.15 -6.73 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 18 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 19 N -0.90 -25.23 11.22 55.49 0.62 -24.61 16 20 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.14 3.16 5.45 -3.54 -0.02 3.14 16 25 C 0.04 0.65 6.76 37.30 0.25 0.90 16 26 O -0.38 -6.88 10.23 -35.23 -0.36 -7.24 16 27 C -0.06 -0.61 8.09 -39.22 -0.32 -0.93 16 28 C -0.22 -1.96 9.01 -39.49 -0.36 -2.32 16 29 H 0.06 0.25 7.65 -51.93 -0.40 -0.14 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.53 7.77 -52.48 -0.41 1.12 16 34 H 0.08 0.83 6.61 -51.93 -0.34 0.49 16 35 H 0.07 0.83 6.90 -51.93 -0.36 0.47 16 36 H 0.09 1.44 5.98 -51.93 -0.31 1.13 16 37 H 0.08 1.28 7.84 -51.93 -0.41 0.88 16 38 H 0.08 1.32 7.79 -51.93 -0.40 0.92 16 39 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 40 H 0.07 1.27 7.73 -51.93 -0.40 0.87 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.33 6.20 -51.93 -0.32 2.01 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.79 6.13 -51.93 -0.32 0.47 16 47 H 0.15 1.38 4.16 -52.49 -0.22 1.16 16 48 H 0.13 0.87 6.28 -52.49 -0.33 0.54 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -31.74 376.08 -8.67 -40.41 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.70 Total: 1.98 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.69 Total: 4.77 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.46 Total: -48.55 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.47 Total: -20.06 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.74 -8.67 -40.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972650456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.846 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds