Wall clock time and date at job start Sat Apr 11 2020 07:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35706 * 117.00475 * 2 1 4 4 C 1.38997 * 119.91866 * 180.02562 * 3 2 1 5 5 C 1.37692 * 120.09282 * 179.97438 * 4 3 2 6 6 C 1.39733 * 119.91353 * 0.02562 * 5 4 3 7 7 C 1.47599 * 120.09245 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99553 * 340.17305 * 7 6 5 9 9 N 1.34772 * 120.00621 * 160.17695 * 7 6 5 10 10 C 1.47486 * 125.66026 * 354.28149 * 9 7 6 11 11 C 1.55021 * 104.89491 * 204.01089 * 10 9 7 12 12 C 1.54516 * 101.52646 * 323.61986 * 11 10 9 13 13 C 1.47191 * 125.66595 * 174.27283 * 9 7 6 14 14 C 1.52074 * 109.88021 * 153.10806 * 12 11 10 15 15 N 1.47302 * 108.63444 * 72.27880 * 14 12 11 16 16 C 1.36928 * 121.06831 * 229.32681 * 15 14 12 17 17 H 1.08005 * 120.00187 * 27.13022 * 16 15 14 18 18 C 1.38811 * 120.00249 * 207.13574 * 16 15 14 19 19 N 1.31623 * 119.99878 * 16.94785 * 18 16 15 20 20 Si 1.86799 * 120.00204 * 196.94978 * 18 16 15 21 21 H 1.48503 * 109.47363 * 265.01306 * 20 18 16 22 22 H 1.48503 * 109.47490 * 145.01379 * 20 18 16 23 23 H 1.48501 * 109.47198 * 25.01288 * 20 18 16 24 24 C 1.47170 * 117.86566 * 49.05064 * 15 14 12 25 25 C 1.53268 * 108.55637 * 309.14969 * 24 15 14 26 26 O 1.42069 * 110.33256 * 276.06614 * 12 11 10 27 27 C 1.39733 * 119.82244 * 0.26822 * 6 5 4 28 28 C 1.37709 * 119.90910 * 359.43209 * 27 6 5 29 29 H 1.09006 * 109.46858 * 60.00478 * 1 2 3 30 30 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47152 * 300.01037 * 1 2 3 32 32 H 1.08001 * 119.95078 * 359.97262 * 4 3 2 33 33 H 1.08009 * 120.04616 * 180.02562 * 5 4 3 34 34 H 1.09002 * 110.34883 * 322.86342 * 10 9 7 35 35 H 1.08998 * 110.35675 * 85.04157 * 10 9 7 36 36 H 1.08998 * 111.01247 * 205.56188 * 11 10 9 37 37 H 1.09003 * 111.01496 * 81.68470 * 11 10 9 38 38 H 1.08998 * 109.90756 * 59.13436 * 13 9 7 39 39 H 1.09003 * 110.06286 * 297.96065 * 13 9 7 40 40 H 1.08999 * 109.61844 * 312.44072 * 14 12 11 41 41 H 1.09004 * 109.50102 * 192.04521 * 14 12 11 42 42 H 0.97006 * 119.99678 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.62295 * 68.87398 * 24 15 14 44 44 H 1.09003 * 109.62309 * 189.24248 * 24 15 14 45 45 H 1.08998 * 109.51478 * 172.81402 * 25 24 15 46 46 H 1.09004 * 109.51718 * 292.96716 * 25 24 15 47 47 H 1.07997 * 120.04658 * 179.72509 * 27 6 5 48 48 H 1.07996 * 119.95391 * 180.27799 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4334 1.2798 -0.0005 5 6 4.0623 2.5046 -0.0011 6 6 3.3032 3.6778 -0.0005 7 6 3.9732 4.9929 -0.0017 8 8 5.1323 5.0849 0.3542 9 7 3.3005 6.0918 -0.3970 10 6 1.9385 6.1090 -0.9625 11 6 1.8685 7.4158 -1.7934 12 6 2.7102 8.3786 -0.9261 13 6 3.8030 7.4739 -0.3359 14 6 3.3243 9.4600 -1.8013 15 7 2.2590 10.3862 -2.2222 16 6 2.1112 10.7431 -3.5359 17 1 2.4383 10.0733 -4.3175 18 6 1.5411 11.9657 -3.8631 19 7 1.4488 12.9131 -2.9541 20 14 0.9048 12.2663 -5.5935 21 1 1.9553 12.9419 -6.3968 22 1 -0.3034 13.1277 -5.5340 23 1 0.5567 10.9684 -6.2254 24 6 1.3548 10.9108 -1.1864 25 6 0.8136 9.7326 -0.3690 26 8 1.9101 8.9434 0.1030 27 6 1.9079 3.6026 0.0062 28 6 1.2864 2.3737 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 4.0194 0.3726 -0.0005 33 1 5.1410 2.5587 -0.0019 34 1 1.7839 5.2423 -1.6052 35 1 1.1966 6.1252 -0.1640 36 1 0.8407 7.7676 -1.8827 37 1 2.3199 7.2789 -2.7760 38 1 4.7164 7.5631 -0.9240 39 1 3.9989 7.7552 0.6988 40 1 3.7824 9.0042 -2.6791 41 1 4.0794 10.0030 -1.2328 42 1 1.0500 13.7673 -3.1827 43 1 1.9021 11.5895 -0.5322 44 1 0.5285 11.4434 -1.6573 45 1 0.2444 10.1098 0.4805 46 1 0.1678 9.1195 -0.9976 47 1 1.3176 4.5070 0.0112 48 1 0.2081 2.3148 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972650456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:54 Heat of formation + Delta-G solvation = -56.695647 kcal Electronic energy + Delta-G solvation = -30913.018856 eV Core-core repulsion = 26741.306385 eV Total energy + Delta-G solvation = -4171.712471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92967 -41.05989 -40.10959 -38.05117 -37.60937 -36.23083 -33.65156 -32.90188 -32.07980 -31.29249 -30.98618 -29.27158 -28.33916 -27.19644 -25.52192 -24.75498 -23.69920 -23.32386 -22.81994 -20.89359 -20.40426 -19.07246 -18.86920 -18.54445 -17.74063 -17.28112 -16.92684 -16.78009 -16.66143 -16.35821 -16.09541 -15.75882 -15.57558 -15.35865 -15.16095 -14.74299 -14.65740 -14.43255 -14.28979 -14.24434 -13.89611 -13.61731 -13.48042 -13.31712 -13.06857 -12.86364 -12.77624 -12.66158 -12.46181 -12.34293 -12.11343 -12.04742 -11.91613 -11.87270 -11.63070 -11.17301 -11.08863 -10.76563 -10.47305 -10.11634 -9.81924 -9.28084 -8.71060 -7.89560 -5.36674 -0.13231 0.29904 1.47629 1.49654 1.59171 1.72798 1.81683 2.28983 2.48463 2.71256 2.77043 3.25375 3.30240 3.48337 3.55609 3.70435 3.86291 3.87191 3.93545 4.14499 4.22946 4.26056 4.34097 4.41276 4.43820 4.45560 4.49664 4.55063 4.56191 4.60262 4.68551 4.73186 4.78150 4.86553 4.90733 4.94137 5.03592 5.04970 5.12018 5.15933 5.21665 5.27928 5.37302 5.57292 5.60506 5.63829 6.30108 6.33609 6.35044 6.42772 7.01233 7.07925 7.75177 8.30669 9.16761 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002456 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.681009 B =11399.766810 C =11991.939592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.150 3.850 4 C -0.166 4.166 5 C -0.029 4.029 6 C -0.188 4.188 7 C 0.573 3.427 8 O -0.585 6.585 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.142 4.142 12 C 0.101 3.899 13 C 0.130 3.870 14 C 0.128 3.872 15 N -0.604 5.604 16 C -0.259 4.259 17 H 0.072 0.928 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.265 1.265 24 C 0.144 3.856 25 C 0.050 3.950 26 O -0.380 6.380 27 C -0.055 4.055 28 C -0.212 4.212 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.010 0.990 42 H 0.251 0.749 43 H -0.005 1.005 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.159 0.841 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 -24.958 5.708 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.104 3.896 4 C -0.185 4.185 5 C -0.048 4.048 6 C -0.191 4.191 7 C 0.365 3.635 8 O -0.467 6.467 9 N -0.341 5.341 10 C -0.018 4.018 11 C -0.180 4.180 12 C 0.060 3.940 13 C 0.007 3.993 14 C 0.002 3.998 15 N -0.329 5.329 16 C -0.388 4.388 17 H 0.089 0.911 18 C -0.244 4.244 19 N -0.582 5.582 20 Si 0.796 3.204 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.189 1.189 24 C 0.018 3.982 25 C -0.027 4.027 26 O -0.299 6.299 27 C -0.073 4.073 28 C -0.231 4.231 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.060 0.940 43 H 0.014 0.986 44 H 0.087 0.913 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.176 0.824 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.663 -25.042 6.074 26.383 hybrid contribution -0.096 1.375 -0.971 1.686 sum -5.758 -23.667 5.103 24.887 Atomic orbital electron populations 1.23451 0.75922 1.05924 1.02760 1.86037 1.23909 1.26498 1.87575 1.19482 0.92507 0.84970 0.92681 1.20529 0.91941 0.98556 1.07454 1.21074 1.00506 0.90299 0.92911 1.19658 0.94823 0.91901 1.12744 1.18311 0.85026 0.83798 0.76362 1.90748 1.18273 1.86688 1.50993 1.48427 1.17817 1.05647 1.62220 1.22887 0.82702 0.98962 0.97280 1.23198 1.02285 0.93917 0.98620 1.22007 0.91438 0.92327 0.88277 1.21604 0.95923 0.80080 1.01705 1.21356 0.90650 0.91093 0.96687 1.44267 1.31580 1.52769 1.04248 1.19471 1.37124 0.98797 0.83439 0.91052 1.25808 1.02799 0.94742 1.01068 1.70196 1.48428 1.04147 1.35409 0.85255 0.77306 0.77886 0.79942 1.21805 1.21852 1.18918 1.21283 0.94095 0.93333 0.89469 1.23272 0.88082 0.92224 0.99117 1.87691 1.42673 1.67529 1.32027 1.21952 0.92771 0.99627 0.92953 1.21486 1.01780 0.91011 1.08779 0.91174 0.86215 0.91277 0.83148 0.84647 0.87757 0.88911 0.88664 0.89936 0.90198 0.91231 0.91214 0.97212 0.94015 0.98646 0.91297 0.87384 0.91902 0.82367 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.73 10.48 -90.26 -0.95 -5.68 16 3 C 0.15 2.48 6.70 22.63 0.15 2.63 16 4 C -0.17 -2.99 9.97 22.32 0.22 -2.77 16 5 C -0.03 -0.63 9.58 22.50 0.22 -0.41 16 6 C -0.19 -4.44 5.75 -20.08 -0.12 -4.55 16 7 C 0.57 17.23 7.68 86.71 0.67 17.90 16 8 O -0.59 -21.91 16.85 -4.02 -0.07 -21.98 16 9 N -0.61 -16.97 3.33 -815.97 -2.72 -19.69 16 10 C 0.10 2.22 4.95 86.88 0.43 2.65 16 11 C -0.14 -3.89 5.90 31.80 0.19 -3.70 16 12 C 0.10 3.37 0.83 -10.36 -0.01 3.36 16 13 C 0.13 4.11 6.25 86.47 0.54 4.65 16 14 C 0.13 5.25 5.23 85.92 0.45 5.70 16 15 N -0.60 -29.04 2.94 -699.48 -2.06 -31.10 16 16 C -0.26 -13.49 9.65 84.03 0.81 -12.68 16 17 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 18 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 19 N -0.94 -53.79 11.22 21.65 0.24 -53.54 16 20 Si 0.97 42.99 29.59 68.60 2.03 45.01 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 C 0.14 6.65 5.45 86.34 0.47 7.12 16 25 C 0.05 1.75 6.76 72.07 0.49 2.24 16 26 O -0.38 -13.42 10.23 -148.98 -1.52 -14.94 16 27 C -0.05 -0.97 8.09 22.51 0.18 -0.79 16 28 C -0.21 -3.03 9.01 22.33 0.20 -2.83 16 29 H 0.07 0.31 7.65 -2.38 -0.02 0.29 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 3.00 7.77 -2.91 -0.02 2.97 16 34 H 0.10 1.79 6.61 -2.39 -0.02 1.77 16 35 H 0.09 1.71 6.90 -2.39 -0.02 1.69 16 36 H 0.10 2.63 5.98 -2.39 -0.01 2.61 16 37 H 0.08 2.32 7.84 -2.39 -0.02 2.30 16 38 H 0.08 2.57 7.79 -2.39 -0.02 2.55 16 39 H 0.07 2.33 8.06 -2.39 -0.02 2.31 16 40 H 0.07 2.74 7.73 -2.39 -0.02 2.72 16 41 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 43 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 44 H 0.07 3.52 6.20 -2.39 -0.01 3.51 16 45 H 0.11 3.23 8.14 -2.39 -0.02 3.22 16 46 H 0.06 2.01 6.13 -2.39 -0.01 2.00 16 47 H 0.16 2.34 4.16 -2.91 -0.01 2.32 16 48 H 0.16 1.32 6.28 -2.91 -0.02 1.30 16 Total: -1.00 -70.48 376.08 2.36 -68.12 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.99 Total: 16.28 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.42 Total: 17.52 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.54 Total: -104.33 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.54 Total: -42.60 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -70.48 2.36 -68.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972650456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.420 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds