Wall clock time and date at job start Sat Apr 11 2020 07:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35718 * 116.99726 * 2 1 4 4 C 1.38995 * 119.90915 * 179.97438 * 3 2 1 5 5 C 1.37704 * 120.08936 * 180.02562 * 4 3 2 6 6 C 1.39733 * 119.90833 * 359.97438 * 5 4 3 7 7 C 1.47602 * 120.08796 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99926 * 352.02045 * 7 6 5 9 9 N 1.34774 * 120.00320 * 172.01447 * 7 6 5 10 10 C 1.47090 * 125.62716 * 5.33822 * 9 7 6 11 11 C 1.54463 * 107.29383 * 180.95445 * 10 9 7 12 12 C 1.54362 * 102.88086 * 21.49515 * 11 10 9 13 13 C 1.47567 * 125.63169 * 185.29017 * 9 7 6 14 14 C 1.52358 * 110.41351 * 207.64960 * 12 11 10 15 15 N 1.47326 * 108.46711 * 286.28721 * 14 12 11 16 16 C 1.36937 * 121.07120 * 130.84790 * 15 14 12 17 17 H 1.08006 * 119.99525 * 205.85012 * 16 15 14 18 18 C 1.38808 * 120.00562 * 25.85079 * 16 15 14 19 19 N 1.31617 * 120.00059 * 14.39316 * 18 16 15 20 20 Si 1.86805 * 120.00122 * 194.39626 * 18 16 15 21 21 H 1.48501 * 109.47005 * 90.00057 * 20 18 16 22 22 H 1.48496 * 109.46856 * 209.99642 * 20 18 16 23 23 H 1.48497 * 109.46981 * 329.99499 * 20 18 16 24 24 C 1.47168 * 117.84671 * 310.86693 * 15 14 12 25 25 C 1.53281 * 108.51746 * 51.31085 * 24 15 14 26 26 O 1.41870 * 110.76273 * 83.66376 * 12 11 10 27 27 C 1.39731 * 119.82647 * 0.27681 * 6 5 4 28 28 C 1.37704 * 119.90738 * 359.47142 * 27 6 5 29 29 H 1.08992 * 109.47522 * 300.00356 * 1 2 3 30 30 H 1.09009 * 109.46783 * 60.00020 * 1 2 3 31 31 H 1.08996 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.95687 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.04700 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.88153 * 300.38416 * 10 9 7 35 35 H 1.09006 * 109.87912 * 61.38702 * 10 9 7 36 36 H 1.08997 * 110.73378 * 263.14280 * 11 10 9 37 37 H 1.09004 * 110.72703 * 139.83991 * 11 10 9 38 38 H 1.08997 * 110.37729 * 37.89931 * 13 9 7 39 39 H 1.09000 * 110.47078 * 275.59685 * 13 9 7 40 40 H 1.09002 * 109.63827 * 166.59688 * 14 12 11 41 41 H 1.08997 * 109.81200 * 46.08061 * 14 12 11 42 42 H 0.97001 * 120.00593 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.63031 * 291.60554 * 24 15 14 44 44 H 1.09005 * 109.79000 * 171.11167 * 24 15 14 45 45 H 1.09003 * 109.51459 * 66.84294 * 25 24 15 46 46 H 1.09006 * 109.51383 * 186.98739 * 25 24 15 47 47 H 1.07999 * 120.04770 * 179.72065 * 27 6 5 48 48 H 1.08004 * 119.95283 * 180.25068 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4332 1.2799 0.0005 5 6 4.0622 2.5049 0.0011 6 6 3.3029 3.6779 0.0005 7 6 3.9729 4.9931 0.0005 8 8 5.1779 5.0614 0.1472 9 7 3.2491 6.1183 -0.1621 10 6 1.7819 6.1896 -0.2383 11 6 1.4047 7.6724 -0.4507 12 6 2.7019 8.2781 -1.0281 13 6 3.7975 7.4820 -0.2922 14 6 2.7959 9.7593 -0.6836 15 7 1.8350 10.4956 -1.5232 16 6 0.9671 11.4020 -0.9751 17 1 0.0305 11.6186 -1.4673 18 6 1.2911 12.0425 0.2130 19 7 2.5265 12.0045 0.6655 20 14 -0.0262 12.9583 1.1698 21 1 -0.6716 12.0319 2.1344 22 1 0.5934 14.0882 1.9077 23 1 -1.0475 13.4828 0.2280 24 6 1.8377 10.2251 -2.9698 25 6 1.7450 8.7099 -3.1819 26 8 2.7766 8.0647 -2.4286 27 6 1.9076 3.6027 0.0053 28 6 1.2863 2.3738 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 4.0194 0.3728 0.0005 33 1 5.1408 2.5590 0.0019 34 1 1.4248 5.5925 -1.0773 35 1 1.3442 5.8230 0.6902 36 1 1.1470 8.1446 0.4972 37 1 0.5855 7.7637 -1.1639 38 1 4.7154 7.4676 -0.8797 39 1 3.9840 7.9133 0.6914 40 1 3.8059 10.1181 -0.8821 41 1 2.5538 9.9100 0.3684 42 1 2.7529 12.4517 1.4960 43 1 2.7610 10.6007 -3.4108 44 1 0.9830 10.7134 -3.4382 45 1 0.7713 8.3540 -2.8451 46 1 1.8704 8.4821 -4.2405 47 1 1.3173 4.5070 0.0095 48 1 0.2079 2.3148 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972650458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:58 Heat of formation + Delta-G solvation = -24.707871 kcal Electronic energy + Delta-G solvation = -31201.394128 eV Core-core repulsion = 27031.068750 eV Total energy + Delta-G solvation = -4170.325377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.82572 -40.01352 -38.81950 -37.13049 -36.24455 -34.50579 -32.20872 -31.33478 -31.11587 -30.34545 -29.65224 -27.96290 -27.29520 -25.70784 -24.33056 -23.31531 -22.66311 -22.16052 -21.31430 -19.86116 -18.92184 -18.25996 -17.46826 -17.09727 -16.53091 -16.12883 -16.00754 -15.49347 -15.24158 -15.05553 -14.71658 -14.43750 -14.27686 -14.10553 -13.71743 -13.63272 -13.44301 -13.28593 -13.05359 -12.84058 -12.72485 -12.49841 -12.22313 -12.17041 -12.05487 -11.43810 -11.34819 -11.09838 -11.00303 -10.90836 -10.89740 -10.67869 -10.30436 -10.21464 -10.00535 -9.79155 -9.58357 -9.29670 -9.08860 -8.60934 -8.57668 -8.37523 -6.80397 -5.89080 -3.33499 0.78439 1.11824 2.85608 2.89261 3.09004 3.29716 3.36985 3.38702 3.74325 4.14566 4.37309 4.43249 4.56097 4.59606 4.72077 4.77451 4.80255 5.00315 5.06668 5.09874 5.14504 5.20008 5.28696 5.36755 5.37243 5.50046 5.58659 5.74110 5.76428 5.83099 5.88578 5.95146 6.01144 6.06044 6.10761 6.16980 6.24230 6.27219 6.39800 6.45037 6.48114 6.60969 6.75062 7.02426 7.03211 7.42045 7.64846 7.65498 7.89800 8.26835 8.28772 9.05598 9.67995 10.25290 11.18907 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002658 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.438479 B =10531.324833 C =10894.252893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.146 3.854 4 C -0.163 4.163 5 C -0.021 4.021 6 C -0.164 4.164 7 C 0.575 3.425 8 O -0.545 6.545 9 N -0.605 5.605 10 C 0.093 3.907 11 C -0.147 4.147 12 C 0.086 3.914 13 C 0.125 3.875 14 C 0.162 3.838 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.905 5.905 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.374 6.374 27 C -0.082 4.082 28 C -0.218 4.218 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.102 0.898 42 H 0.256 0.744 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.165 0.835 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -20.315 -1.783 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.101 3.899 4 C -0.181 4.181 5 C -0.040 4.040 6 C -0.167 4.167 7 C 0.365 3.635 8 O -0.424 6.424 9 N -0.338 5.338 10 C -0.029 4.029 11 C -0.185 4.185 12 C 0.044 3.956 13 C 0.003 3.997 14 C 0.035 3.965 15 N -0.317 5.317 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.293 6.293 27 C -0.099 4.099 28 C -0.237 4.237 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.048 0.952 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.182 0.818 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.355 -20.530 -1.632 21.050 hybrid contribution -1.229 0.792 0.565 1.568 sum -5.584 -19.738 -1.067 20.540 Atomic orbital electron populations 1.23110 0.78076 1.04103 1.01691 1.86034 1.21696 1.27057 1.88099 1.19349 0.92475 0.84200 0.93923 1.20374 0.91224 0.98630 1.07919 1.21083 1.00684 0.89918 0.92345 1.19820 0.93754 0.93453 1.09707 1.17791 0.86152 0.82842 0.76706 1.90765 1.13978 1.86862 1.50778 1.48375 1.07213 1.06913 1.71270 1.22573 0.80911 0.98953 1.00457 1.23109 0.99548 0.92524 1.03287 1.22707 0.92909 0.98288 0.81743 1.22137 0.97382 0.79832 1.00358 1.21188 0.93105 0.83831 0.98342 1.44067 1.41857 1.45751 0.99995 1.19185 0.96783 1.16251 1.05855 0.91310 1.25051 0.95892 0.98331 1.00355 1.69977 1.16109 1.46321 1.22498 0.86246 0.80997 0.79219 0.80044 1.21376 1.21658 1.20452 1.21590 0.99624 0.93050 0.87495 1.23096 0.90631 0.94787 0.94649 1.87652 1.51415 1.73058 1.17142 1.22651 0.94429 0.99520 0.93312 1.21230 1.00246 0.92066 1.10132 0.92379 0.92354 0.88122 0.84608 0.83981 0.90785 0.90824 0.89202 0.89414 0.89669 0.89460 0.95199 0.88009 0.93379 0.95532 0.91920 0.93516 0.89980 0.81797 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.99 10.48 -18.86 -0.20 -3.19 16 3 C 0.15 1.54 6.70 -39.02 -0.26 1.28 16 4 C -0.16 -1.75 9.97 -39.50 -0.39 -2.15 16 5 C -0.02 -0.26 9.58 -39.22 -0.38 -0.64 16 6 C -0.16 -2.24 5.87 -104.96 -0.62 -2.86 16 7 C 0.57 9.57 7.80 -12.44 -0.10 9.47 16 8 O -0.54 -10.71 16.68 5.29 0.09 -10.62 16 9 N -0.61 -9.65 3.33 -175.89 -0.59 -10.24 16 10 C 0.09 1.23 4.89 -2.95 -0.01 1.22 16 11 C -0.15 -2.31 5.88 -25.25 -0.15 -2.46 16 12 C 0.09 1.57 0.84 -89.64 -0.08 1.50 16 13 C 0.13 2.21 6.06 -2.86 -0.02 2.19 16 14 C 0.16 3.63 4.06 -3.92 -0.02 3.62 16 15 N -0.59 -13.94 2.99 -172.25 -0.51 -14.46 16 16 C -0.25 -6.45 9.68 -15.06 -0.15 -6.59 16 17 H 0.07 1.73 7.87 -52.48 -0.41 1.31 16 18 C 0.00 0.06 5.02 -17.43 -0.09 -0.03 16 19 N -0.90 -24.95 10.98 55.49 0.61 -24.34 16 20 Si 0.91 20.63 29.58 -169.99 -5.03 15.60 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.11 2.17 6.71 -3.53 -0.02 2.14 16 25 C 0.05 0.78 6.79 37.30 0.25 1.03 16 26 O -0.37 -7.02 10.28 -35.22 -0.36 -7.38 16 27 C -0.08 -0.92 8.58 -39.22 -0.34 -1.26 16 28 C -0.22 -2.15 9.01 -39.50 -0.36 -2.51 16 29 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.06 0.28 7.65 -51.92 -0.40 -0.11 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.14 1.70 7.67 -52.49 -0.40 1.30 16 34 H 0.07 0.89 6.68 -51.93 -0.35 0.54 16 35 H 0.07 0.82 6.77 -51.93 -0.35 0.46 16 36 H 0.09 1.49 7.83 -51.93 -0.41 1.08 16 37 H 0.09 1.36 6.10 -51.93 -0.32 1.04 16 38 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 39 H 0.09 1.52 7.99 -51.93 -0.42 1.11 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 2.50 5.86 -51.93 -0.30 2.20 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.17 7.97 -51.93 -0.41 0.76 16 45 H 0.05 0.75 6.25 -51.93 -0.32 0.43 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.17 1.67 2.76 -57.59 -0.16 1.51 16 48 H 0.13 0.96 6.28 -52.48 -0.33 0.63 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -31.69 375.24 -8.70 -40.39 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.65 Total: 3.48 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.72 Total: 5.09 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.49 Total: -49.04 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.47 Total: -21.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.69 -8.70 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972650458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.683 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds