Wall clock time and date at job start Sat Apr 11 2020 07:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35718 * 116.99726 * 2 1 4 4 C 1.38995 * 119.90915 * 179.97438 * 3 2 1 5 5 C 1.37704 * 120.08936 * 180.02562 * 4 3 2 6 6 C 1.39733 * 119.90833 * 359.97438 * 5 4 3 7 7 C 1.47602 * 120.08796 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99926 * 352.02045 * 7 6 5 9 9 N 1.34774 * 120.00320 * 172.01447 * 7 6 5 10 10 C 1.47090 * 125.62716 * 5.33822 * 9 7 6 11 11 C 1.54463 * 107.29383 * 180.95445 * 10 9 7 12 12 C 1.54362 * 102.88086 * 21.49515 * 11 10 9 13 13 C 1.47567 * 125.63169 * 185.29017 * 9 7 6 14 14 C 1.52358 * 110.41351 * 207.64960 * 12 11 10 15 15 N 1.47326 * 108.46711 * 286.28721 * 14 12 11 16 16 C 1.36937 * 121.07120 * 130.84790 * 15 14 12 17 17 H 1.08006 * 119.99525 * 205.85012 * 16 15 14 18 18 C 1.38808 * 120.00562 * 25.85079 * 16 15 14 19 19 N 1.31617 * 120.00059 * 14.39316 * 18 16 15 20 20 Si 1.86805 * 120.00122 * 194.39626 * 18 16 15 21 21 H 1.48501 * 109.47005 * 90.00057 * 20 18 16 22 22 H 1.48496 * 109.46856 * 209.99642 * 20 18 16 23 23 H 1.48497 * 109.46981 * 329.99499 * 20 18 16 24 24 C 1.47168 * 117.84671 * 310.86693 * 15 14 12 25 25 C 1.53281 * 108.51746 * 51.31085 * 24 15 14 26 26 O 1.41870 * 110.76273 * 83.66376 * 12 11 10 27 27 C 1.39731 * 119.82647 * 0.27681 * 6 5 4 28 28 C 1.37704 * 119.90738 * 359.47142 * 27 6 5 29 29 H 1.08992 * 109.47522 * 300.00356 * 1 2 3 30 30 H 1.09009 * 109.46783 * 60.00020 * 1 2 3 31 31 H 1.08996 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.95687 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.04700 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.88153 * 300.38416 * 10 9 7 35 35 H 1.09006 * 109.87912 * 61.38702 * 10 9 7 36 36 H 1.08997 * 110.73378 * 263.14280 * 11 10 9 37 37 H 1.09004 * 110.72703 * 139.83991 * 11 10 9 38 38 H 1.08997 * 110.37729 * 37.89931 * 13 9 7 39 39 H 1.09000 * 110.47078 * 275.59685 * 13 9 7 40 40 H 1.09002 * 109.63827 * 166.59688 * 14 12 11 41 41 H 1.08997 * 109.81200 * 46.08061 * 14 12 11 42 42 H 0.97001 * 120.00593 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.63031 * 291.60554 * 24 15 14 44 44 H 1.09005 * 109.79000 * 171.11167 * 24 15 14 45 45 H 1.09003 * 109.51459 * 66.84294 * 25 24 15 46 46 H 1.09006 * 109.51383 * 186.98739 * 25 24 15 47 47 H 1.07999 * 120.04770 * 179.72065 * 27 6 5 48 48 H 1.08004 * 119.95283 * 180.25068 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4332 1.2799 0.0005 5 6 4.0622 2.5049 0.0011 6 6 3.3029 3.6779 0.0005 7 6 3.9729 4.9931 0.0005 8 8 5.1779 5.0614 0.1472 9 7 3.2491 6.1183 -0.1621 10 6 1.7819 6.1896 -0.2383 11 6 1.4047 7.6724 -0.4507 12 6 2.7019 8.2781 -1.0281 13 6 3.7975 7.4820 -0.2922 14 6 2.7959 9.7593 -0.6836 15 7 1.8350 10.4956 -1.5232 16 6 0.9671 11.4020 -0.9751 17 1 0.0305 11.6186 -1.4673 18 6 1.2911 12.0425 0.2130 19 7 2.5265 12.0045 0.6655 20 14 -0.0262 12.9583 1.1698 21 1 -0.6716 12.0319 2.1344 22 1 0.5934 14.0882 1.9077 23 1 -1.0475 13.4828 0.2280 24 6 1.8377 10.2251 -2.9698 25 6 1.7450 8.7099 -3.1819 26 8 2.7766 8.0647 -2.4286 27 6 1.9076 3.6027 0.0053 28 6 1.2863 2.3738 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 4.0194 0.3728 0.0005 33 1 5.1408 2.5590 0.0019 34 1 1.4248 5.5925 -1.0773 35 1 1.3442 5.8230 0.6902 36 1 1.1470 8.1446 0.4972 37 1 0.5855 7.7637 -1.1639 38 1 4.7154 7.4676 -0.8797 39 1 3.9840 7.9133 0.6914 40 1 3.8059 10.1181 -0.8821 41 1 2.5538 9.9100 0.3684 42 1 2.7529 12.4517 1.4960 43 1 2.7610 10.6007 -3.4108 44 1 0.9830 10.7134 -3.4382 45 1 0.7713 8.3540 -2.8451 46 1 1.8704 8.4821 -4.2405 47 1 1.3173 4.5070 0.0095 48 1 0.2079 2.3148 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972650458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:57 Heat of formation + Delta-G solvation = -45.078458 kcal Electronic energy + Delta-G solvation = -31202.277463 eV Core-core repulsion = 27031.068750 eV Total energy + Delta-G solvation = -4171.208712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95498 -41.02798 -40.08418 -38.03257 -37.64467 -36.26314 -33.45534 -33.17755 -32.12816 -31.29309 -30.95198 -29.15341 -28.36272 -27.22905 -25.60530 -24.85874 -23.66146 -23.22069 -22.76956 -21.02718 -20.41400 -19.04397 -18.87870 -18.59283 -17.70730 -17.30174 -16.82030 -16.67712 -16.51303 -16.48173 -16.12880 -15.79122 -15.58714 -15.24061 -15.17635 -14.78157 -14.58742 -14.46516 -14.37041 -14.32363 -13.82154 -13.67189 -13.43523 -13.32762 -12.99758 -12.83322 -12.74732 -12.61957 -12.45779 -12.26122 -12.10630 -12.01328 -12.00411 -11.82113 -11.46622 -11.16400 -11.04410 -10.74719 -10.45857 -10.13284 -9.78756 -9.28253 -8.71532 -7.86951 -5.34730 -0.14384 0.30399 1.49347 1.50512 1.59225 1.74679 1.85378 2.28806 2.49722 2.72976 2.79003 3.25759 3.35819 3.48563 3.57300 3.70677 3.86600 3.94468 3.99485 4.17399 4.20117 4.27492 4.31523 4.37826 4.43152 4.43957 4.47448 4.53899 4.56910 4.58377 4.68234 4.75135 4.78126 4.90348 4.94658 4.99742 5.05370 5.08806 5.11940 5.18592 5.21936 5.27993 5.37245 5.54743 5.60893 5.63792 6.31245 6.34139 6.41344 6.44021 7.02514 7.08727 7.77029 8.31802 9.18987 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002658 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.438479 B =10531.324833 C =10894.252893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.150 3.850 4 C -0.167 4.167 5 C -0.030 4.030 6 C -0.188 4.188 7 C 0.570 3.430 8 O -0.589 6.589 9 N -0.606 5.606 10 C 0.097 3.903 11 C -0.138 4.138 12 C 0.094 3.906 13 C 0.128 3.872 14 C 0.173 3.827 15 N -0.608 5.608 16 C -0.254 4.254 17 H 0.077 0.923 18 C -0.051 4.051 19 N -0.939 5.939 20 Si 0.968 3.032 21 H -0.281 1.281 22 H -0.302 1.302 23 H -0.268 1.268 24 C 0.102 3.898 25 C 0.053 3.947 26 O -0.384 6.384 27 C -0.076 4.076 28 C -0.212 4.212 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.080 0.920 40 H -0.011 1.011 41 H 0.077 0.923 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.115 0.885 47 H 0.178 0.822 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -22.809 -2.427 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.103 3.897 4 C -0.185 4.185 5 C -0.049 4.049 6 C -0.191 4.191 7 C 0.362 3.638 8 O -0.472 6.472 9 N -0.337 5.337 10 C -0.024 4.024 11 C -0.176 4.176 12 C 0.052 3.948 13 C 0.005 3.995 14 C 0.047 3.953 15 N -0.332 5.332 16 C -0.384 4.384 17 H 0.094 0.906 18 C -0.246 4.246 19 N -0.586 5.586 20 Si 0.797 3.203 21 H -0.207 1.207 22 H -0.229 1.229 23 H -0.193 1.193 24 C -0.023 4.023 25 C -0.024 4.024 26 O -0.303 6.303 27 C -0.094 4.094 28 C -0.230 4.230 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.169 0.831 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.007 0.993 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.133 0.867 47 H 0.195 0.805 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.993 -23.050 -2.310 24.506 hybrid contribution -0.136 1.516 0.689 1.671 sum -8.129 -21.535 -1.621 23.075 Atomic orbital electron populations 1.23456 0.75905 1.05938 1.02781 1.86038 1.23939 1.26448 1.87585 1.19498 0.92479 0.85041 0.92660 1.20521 0.92019 0.98434 1.07567 1.21083 1.00495 0.90413 0.92946 1.19671 0.94982 0.91767 1.12711 1.18361 0.85812 0.83870 0.75717 1.90729 1.15970 1.87528 1.52926 1.48399 1.08463 1.05852 1.71020 1.22784 0.79116 0.97402 1.03073 1.23011 0.98016 0.93912 1.02694 1.22369 0.94937 0.95414 0.82078 1.21914 0.96685 0.81333 0.99611 1.20897 0.90776 0.86678 0.96969 1.44322 1.41473 1.45745 1.01705 1.19534 0.97204 1.15888 1.05786 0.90572 1.25795 0.97542 0.99712 1.01515 1.70159 1.18034 1.47707 1.22671 0.85245 0.78710 0.77644 0.78716 1.20724 1.22870 1.19256 1.21792 0.99403 0.95755 0.85352 1.23181 0.91002 0.91973 0.96292 1.87654 1.52563 1.72965 1.17105 1.22730 0.93186 1.00744 0.92715 1.21530 1.01813 0.90994 1.08686 0.91228 0.91189 0.86171 0.83144 0.84834 0.88344 0.87776 0.90255 0.88337 0.91602 0.90223 0.99283 0.90482 0.94087 0.97129 0.90575 0.91737 0.86671 0.80516 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.09 10.48 -90.40 -0.95 -6.03 16 3 C 0.15 2.70 6.70 22.63 0.15 2.85 16 4 C -0.17 -3.32 9.97 22.32 0.22 -3.10 16 5 C -0.03 -0.74 9.58 22.50 0.22 -0.52 16 6 C -0.19 -4.95 5.87 -20.08 -0.12 -5.07 16 7 C 0.57 19.16 7.80 86.72 0.68 19.83 16 8 O -0.59 -24.27 16.68 -3.97 -0.07 -24.33 16 9 N -0.61 -19.12 3.33 -828.65 -2.76 -21.88 16 10 C 0.10 2.31 4.89 86.76 0.42 2.74 16 11 C -0.14 -4.13 5.88 31.55 0.19 -3.94 16 12 C 0.09 3.48 0.84 -10.16 -0.01 3.47 16 13 C 0.13 4.70 6.06 86.56 0.52 5.23 16 14 C 0.17 8.14 4.06 86.01 0.35 8.49 16 15 N -0.61 -28.91 2.99 -698.87 -2.09 -31.00 16 16 C -0.25 -13.04 9.68 84.03 0.81 -12.23 16 17 H 0.08 3.73 7.87 -2.91 -0.02 3.71 16 18 C -0.05 -2.68 5.02 84.86 0.43 -2.26 16 19 N -0.94 -53.81 10.98 21.65 0.24 -53.57 16 20 Si 0.97 42.63 29.58 68.60 2.03 44.66 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 C 0.10 4.01 6.71 86.35 0.58 4.59 16 25 C 0.05 1.65 6.79 72.08 0.49 2.14 16 26 O -0.38 -14.06 10.28 -148.95 -1.53 -15.59 16 27 C -0.08 -1.49 8.58 22.50 0.19 -1.30 16 28 C -0.21 -3.34 9.01 22.32 0.20 -3.14 16 29 H 0.07 0.36 7.65 -2.39 -0.02 0.34 16 30 H 0.07 0.36 7.65 -2.38 -0.02 0.34 16 31 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.13 3.36 7.67 -2.91 -0.02 3.33 16 34 H 0.10 1.94 6.68 -2.39 -0.02 1.93 16 35 H 0.10 1.92 6.77 -2.38 -0.02 1.90 16 36 H 0.08 2.55 7.83 -2.39 -0.02 2.53 16 37 H 0.10 2.74 6.10 -2.39 -0.01 2.72 16 38 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 39 H 0.08 2.99 7.99 -2.39 -0.02 2.97 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.08 3.99 5.86 -2.39 -0.01 3.98 16 42 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.08 2.73 7.97 -2.38 -0.02 2.72 16 45 H 0.06 1.84 6.25 -2.39 -0.01 1.82 16 46 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 47 H 0.18 2.85 2.76 -7.71 -0.02 2.83 16 48 H 0.17 1.49 6.28 -2.91 -0.02 1.48 16 Total: -1.00 -71.89 375.24 2.28 -69.61 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.98 Total: 19.15 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 6.44 Total: 19.00 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.61 Total: -106.46 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -2.54 Total: -45.96 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.89 2.28 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972650458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.532 kcal (2) G-P(sol) polarization free energy of solvation -71.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds