Wall clock time and date at job start Sat Apr 11 2020 07:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47208 * 299.99694 * 3 2 1 6 6 H 1.48503 * 109.47127 * 59.99841 * 3 2 1 7 7 C 1.37869 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00440 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49722 * 300.07052 * 9 7 2 11 11 C 1.53042 * 109.49968 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.53649 * 178.65148 * 11 9 7 13 13 C 1.53197 * 109.31106 * 61.36802 * 12 11 9 14 14 N 1.46926 * 108.77764 * 305.36121 * 13 12 11 15 15 C 1.34777 * 120.63231 * 233.58868 * 14 13 12 16 16 O 1.21349 * 119.99759 * 171.46465 * 15 14 13 17 17 C 1.49442 * 119.99733 * 351.18819 * 15 14 13 18 18 O 1.21351 * 120.00437 * 353.47974 * 17 15 14 19 19 N 1.34783 * 119.99989 * 173.47679 * 17 15 14 20 20 C 1.46494 * 120.00303 * 180.02562 * 19 17 15 21 21 H 1.09006 * 109.42607 * 35.00335 * 20 19 17 22 22 C 1.53025 * 109.42644 * 154.88337 * 20 19 17 23 23 C 1.53389 * 109.72514 * 191.81230 * 22 20 19 24 24 C 1.50882 * 108.19308 * 309.47259 * 23 22 20 25 25 C 1.34571 * 128.32786 * 196.57125 * 24 23 22 26 26 N 1.35193 * 107.62176 * 179.86188 * 25 24 23 27 27 H 0.96997 * 126.00610 * 179.97438 * 26 25 24 28 28 N 1.40313 * 107.99368 * 0.02562 * 26 25 24 29 29 C 1.30132 * 108.12210 * 0.05475 * 28 26 25 30 30 C 1.50928 * 128.30422 * 179.77405 * 29 28 26 31 31 C 1.46924 * 118.73358 * 53.85753 * 14 13 12 32 32 H 0.96997 * 119.99914 * 0.02562 * 1 2 3 33 33 H 1.08997 * 109.45586 * 58.63191 * 11 9 7 34 34 H 1.08998 * 109.45997 * 298.67098 * 11 9 7 35 35 H 1.08994 * 109.50113 * 301.41764 * 12 11 9 36 36 H 1.09003 * 109.52164 * 181.32811 * 12 11 9 37 37 H 1.09000 * 109.58740 * 185.57462 * 13 12 11 38 38 H 1.09001 * 109.70258 * 65.22154 * 13 12 11 39 39 H 0.96997 * 119.99353 * 359.97438 * 19 17 15 40 40 H 1.08997 * 109.43554 * 311.89549 * 22 20 19 41 41 H 1.09006 * 109.42546 * 71.79232 * 22 20 19 42 42 H 1.08999 * 109.71288 * 69.14411 * 23 22 20 43 43 H 1.08994 * 109.71998 * 189.79515 * 23 22 20 44 44 H 1.08000 * 126.18833 * 359.82990 * 25 24 23 45 45 H 1.09002 * 109.75926 * 77.14359 * 30 29 28 46 46 H 1.09001 * 109.66285 * 316.50186 * 30 29 28 47 47 H 1.09003 * 109.58731 * 65.93783 * 31 14 13 48 48 H 1.09004 * 109.58515 * 186.35260 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6230 -2.5566 0.8895 11 6 2.2450 -3.6628 0.0005 12 6 1.4810 -4.9884 0.0345 13 6 0.6053 -5.1006 -1.2175 14 7 -0.2534 -3.9114 -1.3021 15 6 -1.5898 -4.0365 -1.4241 16 8 -2.3012 -3.0573 -1.3376 17 6 -2.1948 -5.3803 -1.6720 18 8 -1.4801 -6.3384 -1.8812 19 7 -3.5345 -5.5282 -1.6631 20 6 -4.1277 -6.8455 -1.9055 21 1 -3.4885 -7.6159 -1.4740 22 6 -5.5109 -6.9085 -1.2541 23 6 -6.0131 -8.3579 -1.2444 24 6 -5.8717 -8.9148 -2.6395 25 6 -6.4509 -10.0107 -3.1633 26 7 -6.0371 -10.1190 -4.4458 27 1 -6.2930 -10.8154 -5.0707 28 7 -5.1715 -9.0477 -4.7139 29 6 -5.0711 -8.3285 -3.6341 30 6 -4.2565 -7.0768 -3.4162 31 6 0.3732 -2.5832 -1.2574 32 1 -0.4850 0.8400 -0.0004 33 1 2.8876 -3.5915 0.8781 34 1 2.8558 -3.6187 -0.9012 35 1 0.8511 -5.0227 0.9233 36 1 2.1894 -5.8166 0.0583 37 1 -0.0146 -5.9948 -1.1509 38 1 1.2370 -5.1591 -2.1038 39 1 -4.1058 -4.7624 -1.4954 40 1 -5.4468 -6.5401 -0.2303 41 1 -6.2066 -6.2884 -1.8197 42 1 -5.4161 -8.9492 -0.5501 43 1 -7.0602 -8.3823 -0.9431 44 1 -7.1241 -10.6825 -2.6516 45 1 -4.7580 -6.2258 -3.8770 46 1 -3.2665 -7.2025 -3.8547 47 1 0.9881 -2.4391 -2.1458 48 1 -0.3998 -1.8157 -1.2172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350752026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:07 Heat of formation + Delta-G solvation = 7.447661 kcal Electronic energy + Delta-G solvation = -30563.272248 eV Core-core repulsion = 26426.633990 eV Total energy + Delta-G solvation = -4136.638258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77178 -40.48573 -38.55919 -37.02142 -36.73435 -33.84358 -33.12939 -32.41811 -31.71018 -29.93953 -29.71299 -28.78026 -26.08169 -25.02086 -24.49195 -22.79331 -21.78296 -21.51980 -21.30898 -20.12952 -19.32215 -18.70558 -17.87694 -17.12287 -16.73284 -16.22588 -15.80616 -15.41760 -15.36329 -14.90838 -14.59714 -14.47600 -13.98850 -13.91254 -13.84940 -13.59379 -13.35748 -13.13431 -13.00881 -12.85209 -12.56731 -12.29228 -12.12365 -11.95897 -11.73688 -11.57212 -11.31359 -11.15686 -10.98169 -10.66993 -10.64415 -10.42990 -10.28800 -10.09922 -9.85456 -9.67217 -9.29680 -9.17451 -9.09384 -8.73574 -8.55169 -8.43465 -7.79034 -5.99946 -4.08287 1.60334 1.82483 2.43934 2.49343 2.75677 3.30519 3.38905 3.42262 3.65341 3.93276 4.20827 4.41044 4.43438 4.52052 4.72360 4.77316 4.85275 5.01152 5.14540 5.26836 5.30132 5.31551 5.46994 5.59679 5.64703 5.68902 5.72947 5.79768 5.82630 5.89068 5.96650 6.16419 6.27399 6.35240 6.39599 6.56023 6.62275 6.73971 6.87321 6.97958 7.00501 7.05902 7.19857 7.28872 7.39008 7.60964 7.84647 7.96583 8.00082 8.19050 8.37512 8.60936 8.95965 9.57247 11.05419 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.002205 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.307974 B =12693.539236 C =13169.032461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.133 4.133 13 C 0.072 3.928 14 N -0.569 5.569 15 C 0.493 3.507 16 O -0.520 6.520 17 C 0.512 3.488 18 O -0.516 6.516 19 N -0.702 5.702 20 C 0.150 3.850 21 H 0.097 0.903 22 C -0.127 4.127 23 C -0.035 4.035 24 C -0.240 4.240 25 C 0.061 3.939 26 N -0.486 5.486 27 H 0.439 0.561 28 N -0.286 5.286 29 C 0.092 3.908 30 C -0.053 4.053 31 C 0.108 3.892 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.126 0.874 38 H 0.060 0.940 39 H 0.414 0.586 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.176 0.824 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 -20.428 -4.164 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.049 0.951 11 C -0.150 4.150 12 C -0.171 4.171 13 C -0.050 4.050 14 N -0.301 5.301 15 C 0.274 3.726 16 O -0.397 6.397 17 C 0.294 3.706 18 O -0.393 6.393 19 N -0.354 5.354 20 C 0.045 3.955 21 H 0.115 0.885 22 C -0.165 4.165 23 C -0.073 4.073 24 C -0.251 4.251 25 C -0.084 4.084 26 N -0.194 5.194 27 H 0.282 0.718 28 N -0.108 5.108 29 C -0.077 4.077 30 C -0.093 4.093 31 C -0.012 4.012 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.193 0.807 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.067 0.933 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.030 -20.577 -5.466 25.497 hybrid contribution -0.171 0.866 0.429 0.982 sum -14.201 -19.710 -5.038 24.810 Atomic orbital electron populations 1.69900 1.05711 1.26708 1.49534 1.25065 0.94912 0.99281 0.94859 0.86531 0.80082 0.83760 0.77611 1.19788 1.20978 1.21019 1.21133 0.93002 0.90063 1.51526 0.92238 1.19040 0.92646 0.92437 0.93688 0.95150 1.21656 0.98556 0.94283 1.00542 1.21957 0.98625 0.98791 0.97763 1.22679 0.94712 0.89799 0.97851 1.48431 1.04477 1.10132 1.67087 1.19817 0.83983 0.88317 0.80466 1.90776 1.60154 1.39031 1.49784 1.20789 0.82881 0.90008 0.76877 1.90481 1.59292 1.41657 1.47823 1.45874 1.06558 1.11925 1.71086 1.20970 0.94977 0.85394 0.94155 0.88513 1.21860 0.95249 0.97576 1.01838 1.19918 1.01439 0.94382 0.91602 1.20147 1.06551 0.99654 0.98754 1.22058 1.00727 0.99325 0.86339 1.46347 1.38488 1.23819 1.10757 0.71756 1.77064 1.12016 0.98979 1.22771 1.22179 0.97485 0.97025 0.91059 1.20521 0.99682 0.92282 0.96804 1.22567 0.98769 0.80731 0.99121 0.92718 0.93078 0.93185 0.92423 0.92155 0.85698 0.92211 0.74907 0.90135 0.90742 0.90777 0.90544 0.80673 0.89227 0.89103 0.93337 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 11.41 55.43 0.63 -24.72 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.03 8.56 -34.44 -0.29 -14.33 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.04 1.02 2.26 -91.43 -0.21 0.81 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.31 5.10 -26.69 -0.14 -2.45 16 12 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 13 C 0.07 1.28 5.98 -3.71 -0.02 1.26 16 14 N -0.57 -11.82 2.97 -173.01 -0.51 -12.34 16 15 C 0.49 9.82 7.73 -11.59 -0.09 9.73 16 16 O -0.52 -11.74 15.93 5.50 0.09 -11.65 16 17 C 0.51 8.19 7.71 -11.59 -0.09 8.10 16 18 O -0.52 -8.62 12.84 5.50 0.07 -8.55 16 19 N -0.70 -8.62 5.07 -54.04 -0.27 -8.90 16 20 C 0.15 1.52 2.40 -67.73 -0.16 1.36 16 21 H 0.10 1.10 7.53 -51.93 -0.39 0.70 16 22 C -0.13 -0.95 5.33 -26.52 -0.14 -1.09 16 23 C -0.03 -0.23 6.28 -27.59 -0.17 -0.40 16 24 C -0.24 -2.05 5.89 -104.98 -0.62 -2.67 16 25 C 0.06 0.41 11.95 -17.37 -0.21 0.20 16 26 N -0.49 -3.79 7.37 30.35 0.22 -3.56 16 27 H 0.44 1.95 8.96 -182.44 -1.64 0.32 16 28 N -0.29 -3.34 12.68 33.75 0.43 -2.91 16 29 C 0.09 1.01 7.10 -82.35 -0.58 0.42 16 30 C -0.05 -0.57 5.88 -27.58 -0.16 -0.73 16 31 C 0.11 2.61 5.44 -3.49 -0.02 2.59 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.13 2.14 4.32 -54.75 -0.24 1.91 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.41 4.75 8.09 -40.82 -0.33 4.42 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.12 3.42 5.15 -51.93 -0.27 3.15 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -33.23 382.09 -10.09 -43.32 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.32 Total: 5.51 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -3.16 Total: 1.91 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.50 Total: -52.43 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.16 Total: -20.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.23 -10.09 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350752026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.771 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds