Wall clock time and date at job start Sat Apr 11 2020 07:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00102 * 2 1 4 4 H 1.48496 * 109.47069 * 240.00329 * 3 2 1 5 5 H 1.48497 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47126 * 120.00424 * 3 2 1 7 7 C 1.37877 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00422 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.52641 * 59.92079 * 9 7 2 11 11 C 1.53042 * 109.49845 * 180.02562 * 9 7 2 12 12 C 1.53042 * 109.53750 * 181.31315 * 11 9 7 13 13 C 1.53187 * 109.31753 * 298.63944 * 12 11 9 14 14 N 1.46933 * 108.77740 * 54.63304 * 13 12 11 15 15 C 1.34770 * 120.63035 * 126.36800 * 14 13 12 16 16 O 1.21356 * 119.99752 * 188.66961 * 15 14 13 17 17 C 1.49450 * 120.00067 * 8.67335 * 15 14 13 18 18 O 1.21344 * 119.99940 * 6.76141 * 17 15 14 19 19 N 1.34780 * 119.99760 * 186.76526 * 17 15 14 20 20 C 1.46505 * 119.99849 * 179.97438 * 19 17 15 21 21 H 1.08997 * 109.37433 * 35.13928 * 20 19 17 22 22 C 1.53025 * 109.42237 * 154.99877 * 20 19 17 23 23 C 1.53392 * 109.67919 * 191.78563 * 22 20 19 24 24 C 1.50881 * 108.19427 * 309.49960 * 23 22 20 25 25 C 1.34570 * 128.32484 * 196.56720 * 24 23 22 26 26 N 1.35198 * 107.61697 * 179.85405 * 25 24 23 27 27 H 0.97000 * 126.00338 * 180.02562 * 26 25 24 28 28 N 1.40313 * 107.99454 * 0.03354 * 26 25 24 29 29 C 1.30129 * 108.12355 * 0.04605 * 28 26 25 30 30 C 1.50947 * 128.28680 * 179.69992 * 29 28 26 31 31 C 1.46930 * 118.73687 * 306.64617 * 14 13 12 32 32 H 0.97002 * 119.99647 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.45644 * 61.30121 * 11 9 7 34 34 H 1.08996 * 109.45940 * 301.34066 * 11 9 7 35 35 H 1.08997 * 109.49838 * 178.68008 * 12 11 9 36 36 H 1.09006 * 109.51823 * 58.60504 * 12 11 9 37 37 H 1.09000 * 109.58694 * 294.84394 * 13 12 11 38 38 H 1.08996 * 109.70670 * 174.48744 * 13 12 11 39 39 H 0.96998 * 120.00351 * 359.97438 * 19 17 15 40 40 H 1.08999 * 109.43146 * 71.73387 * 22 20 19 41 41 H 1.09000 * 109.43089 * 311.83664 * 22 20 19 42 42 H 1.09007 * 109.71557 * 69.16667 * 23 22 20 43 43 H 1.08992 * 109.71820 * 189.81596 * 23 22 20 44 44 H 1.07992 * 126.19551 * 359.88210 * 25 24 23 45 45 H 1.09000 * 109.71398 * 316.51049 * 30 29 28 46 46 H 1.09000 * 109.71888 * 77.11463 * 30 29 28 47 47 H 1.08992 * 109.58920 * 173.14299 * 31 14 13 48 48 H 1.09000 * 109.58188 * 293.57052 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6225 -2.5570 -0.8893 11 6 2.2448 -3.6629 -0.0005 12 6 1.4808 -4.9886 -0.0336 13 6 0.6055 -5.1003 1.2186 14 7 -0.2531 -3.9109 1.3031 15 6 -1.5895 -4.0360 1.4246 16 8 -2.3011 -3.0570 1.3356 17 6 -2.1951 -5.3803 1.6691 18 8 -1.4807 -6.3381 1.8803 19 7 -3.5346 -5.5286 1.6549 20 6 -4.1282 -6.8464 1.8940 21 1 -3.5252 -7.3878 2.6230 22 6 -5.5488 -6.6739 2.4361 23 6 -6.0676 -8.0179 2.9627 24 6 -5.8484 -9.0593 1.8931 25 6 -6.4076 -10.2788 1.7886 26 7 -5.9183 -10.8588 0.6697 27 1 -6.1445 -11.7426 0.3399 28 7 -5.0255 -9.9580 0.0694 29 6 -4.9823 -8.8828 0.8010 30 6 -4.1663 -7.6325 0.5787 31 6 0.3724 -2.5826 1.2464 32 1 -0.4850 0.8401 0.0004 33 1 2.8559 -3.6185 0.9010 34 1 2.8871 -3.5919 -0.8783 35 1 2.1894 -5.8164 -0.0572 36 1 0.8506 -5.0236 -0.9223 37 1 1.2392 -5.1571 2.1036 38 1 -0.0144 -5.9946 1.1551 39 1 -4.1056 -4.7628 1.4864 40 1 -6.2013 -6.3211 1.6375 41 1 -5.5415 -5.9453 3.2468 42 1 -5.5206 -8.2957 3.8638 43 1 -7.1312 -7.9392 3.1870 44 1 -7.1189 -10.7151 2.4741 45 1 -3.1529 -7.9027 0.2820 46 1 -4.6281 -7.0256 -0.2001 47 1 -0.4011 -1.8162 1.1988 48 1 0.9868 -2.4300 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350752029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:17 Heat of formation + Delta-G solvation = 7.658050 kcal Electronic energy + Delta-G solvation = -30615.860708 eV Core-core repulsion = 26479.231574 eV Total energy + Delta-G solvation = -4136.629134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76715 -40.48787 -38.56774 -37.02074 -36.74885 -33.84657 -33.13679 -32.41353 -31.70591 -29.93649 -29.73694 -28.77900 -26.07817 -25.01352 -24.49455 -22.80171 -21.77664 -21.52082 -21.30607 -20.14468 -19.29243 -18.70471 -17.87306 -17.12362 -16.72280 -16.25214 -15.64816 -15.58757 -15.33016 -14.92734 -14.57714 -14.46148 -14.01418 -13.90698 -13.85403 -13.57247 -13.32598 -13.13861 -13.04753 -12.84653 -12.55358 -12.29160 -12.12493 -11.93952 -11.75220 -11.56996 -11.31801 -11.16410 -10.94416 -10.70615 -10.64003 -10.43647 -10.27617 -10.09799 -9.85336 -9.66174 -9.25739 -9.19975 -9.08442 -8.73329 -8.56566 -8.42516 -7.79403 -5.99452 -4.08096 1.60957 1.82613 2.44477 2.49839 2.75904 3.32902 3.38427 3.40126 3.65942 3.92497 4.22009 4.41197 4.43572 4.52166 4.71768 4.78391 4.85326 5.01103 5.14851 5.27121 5.30408 5.31665 5.46874 5.60353 5.64956 5.69220 5.73164 5.79864 5.82941 5.89416 5.96722 6.16628 6.27620 6.35871 6.40033 6.56595 6.63705 6.74347 6.87693 6.98568 7.01234 7.05755 7.21016 7.28956 7.39746 7.61914 7.85456 7.96884 8.00585 8.19425 8.37775 8.61132 8.95774 9.57304 11.05778 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002261 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.239249 B =12383.646824 C =13042.844455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.072 3.928 14 N -0.569 5.569 15 C 0.493 3.507 16 O -0.521 6.521 17 C 0.512 3.488 18 O -0.516 6.516 19 N -0.702 5.702 20 C 0.150 3.850 21 H 0.097 0.903 22 C -0.127 4.127 23 C -0.035 4.035 24 C -0.240 4.240 25 C 0.061 3.939 26 N -0.486 5.486 27 H 0.439 0.561 28 N -0.285 5.285 29 C 0.092 3.908 30 C -0.053 4.053 31 C 0.108 3.892 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.176 0.824 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 -20.041 5.942 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.050 4.050 14 N -0.301 5.301 15 C 0.274 3.726 16 O -0.398 6.398 17 C 0.294 3.706 18 O -0.393 6.393 19 N -0.355 5.355 20 C 0.045 3.955 21 H 0.115 0.885 22 C -0.165 4.165 23 C -0.073 4.073 24 C -0.251 4.251 25 C -0.085 4.085 26 N -0.194 5.194 27 H 0.282 0.718 28 N -0.108 5.108 29 C -0.077 4.077 30 C -0.093 4.093 31 C -0.012 4.012 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.251 0.749 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.193 0.807 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.142 0.858 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.045 -20.623 5.022 25.452 hybrid contribution -0.170 1.025 0.418 1.120 sum -14.216 -19.598 5.440 24.815 Atomic orbital electron populations 1.69873 1.05718 1.26942 1.49354 1.25062 0.94918 0.99269 0.94836 0.86634 0.79562 0.83078 0.78595 1.20280 1.21266 1.20249 1.21049 0.92926 0.90049 1.51806 0.92331 1.18883 0.92666 0.92459 0.93847 0.95229 1.21656 0.98558 0.94274 1.00541 1.21958 0.98641 0.98797 0.97781 1.22683 0.94704 0.89803 0.97853 1.48431 1.04506 1.10117 1.67046 1.19817 0.83962 0.88316 0.80485 1.90777 1.60148 1.39048 1.49801 1.20782 0.82888 0.89993 0.76893 1.90477 1.59264 1.41830 1.47680 1.45880 1.06583 1.11697 1.71303 1.20959 0.94702 0.83320 0.96515 0.88541 1.21858 0.94806 0.98067 1.01769 1.19917 1.01208 0.90982 0.95224 1.20142 1.05709 0.97502 1.01781 1.22055 1.00326 0.94499 0.91576 1.46352 1.36123 1.16797 1.20137 0.71752 1.77069 1.11647 1.00884 1.21165 1.22183 0.97239 0.94858 0.93463 1.20513 0.99822 0.90493 0.98482 1.22398 0.98886 0.80752 0.99163 0.92590 0.93184 0.93072 0.92144 0.92415 0.92214 0.85675 0.74909 0.90722 0.90167 0.90810 0.90559 0.80688 0.89054 0.89195 0.85757 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 11.39 55.43 0.63 -24.77 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.09 8.56 -34.44 -0.29 -14.38 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.01 2.24 -91.87 -0.21 0.81 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.32 5.11 -26.69 -0.14 -2.46 16 12 C -0.13 -2.36 6.08 -26.61 -0.16 -2.53 16 13 C 0.07 1.28 5.99 -3.71 -0.02 1.26 16 14 N -0.57 -11.84 2.98 -173.54 -0.52 -12.35 16 15 C 0.49 9.83 7.73 -11.59 -0.09 9.74 16 16 O -0.52 -11.74 15.93 5.49 0.09 -11.66 16 17 C 0.51 8.19 7.70 -11.58 -0.09 8.10 16 18 O -0.52 -8.63 12.85 5.50 0.07 -8.55 16 19 N -0.70 -8.63 5.07 -54.08 -0.27 -8.90 16 20 C 0.15 1.52 2.39 -67.77 -0.16 1.36 16 21 H 0.10 1.09 7.53 -51.93 -0.39 0.70 16 22 C -0.13 -0.94 5.34 -26.52 -0.14 -1.08 16 23 C -0.03 -0.23 6.28 -27.59 -0.17 -0.40 16 24 C -0.24 -2.06 5.89 -104.98 -0.62 -2.68 16 25 C 0.06 0.41 11.95 -17.37 -0.21 0.20 16 26 N -0.49 -3.81 7.37 30.35 0.22 -3.59 16 27 H 0.44 1.98 8.96 -182.44 -1.64 0.34 16 28 N -0.29 -3.35 12.68 33.75 0.43 -2.92 16 29 C 0.09 1.01 7.10 -82.34 -0.58 0.43 16 30 C -0.05 -0.57 5.87 -27.62 -0.16 -0.74 16 31 C 0.11 2.61 5.39 -3.93 -0.02 2.59 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.13 2.16 4.31 -54.80 -0.24 1.93 16 39 H 0.41 4.76 8.09 -40.82 -0.33 4.43 16 40 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.12 3.45 5.11 -51.93 -0.27 3.18 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.21 381.96 -10.10 -43.31 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.32 Total: 5.69 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.16 Total: 1.83 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.49 Total: -52.53 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.16 Total: -20.21 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.21 -10.10 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350752029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.964 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds