Wall clock time and date at job start Sat Apr 11 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99939 * 2 1 4 4 C 1.50699 * 109.47440 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99427 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.46963 * 120.59505 * 180.02562 * 6 4 3 8 8 C 1.53368 * 108.63500 * 235.25102 * 7 6 4 9 9 N 1.46965 * 108.63334 * 310.57078 * 8 7 6 10 10 C 1.34774 * 120.59512 * 235.20446 * 9 8 7 11 11 O 1.21280 * 120.00055 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00027 * 180.02562 * 10 9 8 13 13 H 1.09003 * 109.47396 * 37.43631 * 12 10 9 14 14 C 1.50702 * 109.47270 * 277.43754 * 12 10 9 15 15 H 1.08007 * 119.99544 * 327.51851 * 14 12 10 16 16 C 1.37879 * 120.00733 * 147.51784 * 14 12 10 17 17 N 1.31507 * 120.00435 * 174.52787 * 16 14 12 18 18 Si 1.86800 * 119.99371 * 354.52835 * 16 14 12 19 19 H 1.48494 * 109.47464 * 273.11258 * 18 16 14 20 20 H 1.48504 * 109.47514 * 33.11833 * 18 16 14 21 21 H 1.48506 * 109.46980 * 153.11298 * 18 16 14 22 22 C 1.50701 * 109.47527 * 157.43565 * 12 10 9 23 23 C 1.38238 * 119.99405 * 64.16204 * 22 12 10 24 24 C 1.38245 * 119.99678 * 179.81173 * 23 22 12 25 25 C 1.38239 * 119.99444 * 0.39590 * 24 23 22 26 26 C 1.38233 * 120.00263 * 359.85801 * 25 24 23 27 27 C 1.38227 * 120.00395 * 244.43418 * 22 12 10 28 28 C 1.46962 * 118.81050 * 55.48215 * 9 8 7 29 29 C 1.46965 * 120.59609 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47461 * 299.99949 * 1 2 3 32 32 H 1.09000 * 109.47040 * 60.00356 * 1 2 3 33 33 H 1.08999 * 109.47177 * 59.99496 * 3 2 1 34 34 H 1.08999 * 109.46693 * 299.99800 * 3 2 1 35 35 H 1.09004 * 109.61269 * 115.50391 * 7 6 4 36 36 H 1.09007 * 109.74843 * 355.07626 * 7 6 4 37 37 H 1.09000 * 109.60824 * 190.83120 * 8 7 6 38 38 H 1.08994 * 109.61479 * 70.32189 * 8 7 6 39 39 H 0.96999 * 120.00300 * 179.97438 * 17 16 14 40 40 H 1.07992 * 120.00660 * 0.02562 * 23 22 12 41 41 H 1.07992 * 120.00274 * 180.23010 * 24 23 22 42 42 H 1.08004 * 119.99536 * 179.83364 * 25 24 23 43 43 H 1.08001 * 119.99991 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99965 * 359.97438 * 27 22 12 45 45 H 1.09005 * 109.61235 * 64.26127 * 28 9 8 46 46 H 1.08993 * 109.61172 * 184.77447 * 28 9 8 47 47 H 1.08990 * 109.61239 * 244.49654 * 29 6 4 48 48 H 1.09000 * 109.60744 * 5.00970 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7425 2.1961 0.0003 8 6 6.2882 2.9893 1.1941 9 7 5.6700 4.3226 1.1940 10 6 6.4339 5.4330 1.1945 11 8 7.6429 5.3372 1.1946 12 6 5.7858 6.7934 1.1951 13 1 4.8928 6.7703 1.8197 14 6 5.4038 7.1685 -0.2137 15 1 6.0059 6.8309 -1.0444 16 6 4.2859 7.9424 -0.4421 17 7 4.0123 8.3596 -1.6589 18 14 3.1598 8.3983 0.9769 19 1 2.1526 7.3252 1.1741 20 1 3.9635 8.5566 2.2156 21 1 2.4681 9.6759 0.6691 22 6 6.7542 7.8111 1.7407 23 6 7.9282 8.0809 1.0626 24 6 8.8148 9.0172 1.5611 25 6 8.5310 9.6776 2.7419 26 6 7.3595 9.4039 3.4227 27 6 6.4712 8.4705 2.9221 28 6 4.2039 4.4234 1.1996 29 6 3.6581 3.6302 -0.0003 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 6.1379 2.6117 -0.9266 36 1 6.0399 1.1511 0.0887 37 1 7.3701 3.0878 1.1041 38 1 6.0415 2.4716 2.1209 39 1 3.2256 8.9038 -1.8196 40 1 8.1513 7.5628 0.1417 41 1 9.7302 9.2308 1.0295 42 1 9.2249 10.4072 3.1328 43 1 7.1380 9.9196 4.3454 44 1 5.5558 8.2568 3.4540 45 1 3.8119 4.0054 2.1269 46 1 3.9087 5.4691 1.1134 47 1 3.9053 4.1477 -0.9271 48 1 2.5763 3.5317 0.0894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362129337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:42 Heat of formation + Delta-G solvation = -68.761583 kcal Electronic energy + Delta-G solvation = -31353.229998 eV Core-core repulsion = 27180.994309 eV Total energy + Delta-G solvation = -4172.235690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43065 -39.45528 -38.24270 -37.58811 -36.49591 -33.96245 -33.62959 -31.85551 -31.30926 -30.15326 -29.21252 -28.15642 -27.17078 -25.95007 -23.93064 -23.51517 -22.44791 -21.87732 -20.90056 -19.67353 -18.33560 -17.41472 -17.23219 -16.70989 -16.48500 -16.35780 -16.01377 -15.65799 -15.27559 -14.98992 -14.94262 -14.65744 -14.43010 -14.22361 -13.93877 -13.48417 -13.24728 -13.10610 -12.85453 -12.78901 -12.61320 -12.38814 -12.28480 -12.04575 -11.92276 -11.69482 -11.48031 -11.33145 -11.23145 -11.15401 -10.99472 -10.56219 -10.30646 -10.03636 -10.00771 -9.75669 -9.69218 -9.09193 -8.92930 -8.84433 -8.14291 -8.09139 -7.85360 -6.40086 -4.43748 2.11287 2.19010 2.53214 2.58908 2.97441 3.13640 3.16354 3.37348 3.48741 3.74855 4.10331 4.42351 4.56203 4.80304 4.90663 4.92396 4.93309 4.95715 5.07776 5.12392 5.19425 5.26278 5.40404 5.44942 5.46933 5.53417 5.58365 5.64210 5.75331 5.76399 5.90904 5.95295 5.97612 6.07365 6.16288 6.28479 6.39342 6.41301 6.69034 6.76191 6.83007 6.88389 7.14368 7.19371 7.24752 7.30388 7.56075 7.75473 7.87116 8.10610 8.15606 8.61911 8.88413 9.16270 10.70828 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003410 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.444713 B = 8208.930355 C = 9343.235151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.517 3.483 5 O -0.527 6.527 6 N -0.608 5.608 7 C 0.101 3.899 8 C 0.100 3.900 9 N -0.616 5.616 10 C 0.540 3.460 11 O -0.550 6.550 12 C 0.034 3.966 13 H 0.058 0.942 14 C -0.508 4.508 15 H 0.082 0.918 16 C 0.087 3.913 17 N -0.878 5.878 18 Si 0.851 3.149 19 H -0.270 1.270 20 H -0.250 1.250 21 H -0.283 1.283 22 C -0.039 4.039 23 C -0.064 4.064 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.133 4.133 28 C 0.097 3.903 29 C 0.090 3.910 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.094 0.906 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -7.017 6.016 10.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.037 4.037 4 C 0.304 3.696 5 O -0.403 6.403 6 N -0.343 5.343 7 C -0.022 4.022 8 C -0.024 4.024 9 N -0.350 5.350 10 C 0.331 3.669 11 O -0.428 6.428 12 C 0.012 3.988 13 H 0.076 0.924 14 C -0.545 4.545 15 H 0.100 0.900 16 C -0.118 4.118 17 N -0.513 5.513 18 Si 0.677 3.323 19 H -0.196 1.196 20 H -0.174 1.174 21 H -0.208 1.208 22 C -0.040 4.040 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.027 4.027 29 C -0.033 4.033 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.130 0.870 47 H 0.113 0.887 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.516 -7.713 5.875 10.696 hybrid contribution -1.160 0.864 0.545 1.546 sum -5.676 -6.849 6.421 10.970 Atomic orbital electron populations 1.22837 0.80422 1.03207 1.00237 1.88001 1.19745 1.25382 1.95441 1.22311 0.91860 0.86804 1.02764 1.20196 0.88636 0.84129 0.76624 1.90703 1.74481 1.26147 1.48935 1.48028 1.06976 1.05910 1.73410 1.22020 0.78724 1.02148 0.99301 1.21855 1.00097 0.83112 0.97344 1.47945 1.06219 1.05443 1.75397 1.21255 0.86813 0.86214 0.72570 1.90585 1.14568 1.87099 1.50503 1.18403 0.93678 0.87155 0.99520 0.92390 1.20444 1.11524 1.33945 0.88580 0.89987 1.24936 0.97167 0.94327 0.95361 1.69851 1.27047 1.34226 1.20220 0.87262 0.81502 0.79130 0.84432 1.19562 1.17373 1.20830 1.20097 0.94609 0.97017 0.92291 1.20918 0.92887 0.95313 0.99107 1.21067 0.99614 0.97796 0.96637 1.20885 0.97521 1.00984 0.96497 1.20879 0.95184 0.99278 0.99836 1.21047 0.99242 0.98433 0.96390 1.22190 0.80618 1.02992 0.96879 1.22363 0.97560 0.82281 1.01122 0.89167 0.93788 0.93718 0.90104 0.89964 0.90559 0.88187 0.87896 0.91774 0.92025 0.86083 0.87112 0.87365 0.87330 0.87175 0.91878 0.87029 0.88745 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.63 10.24 -55.14 -0.56 -5.20 16 3 C 0.04 0.46 4.76 36.01 0.17 0.64 16 4 C 0.52 7.38 7.77 -10.99 -0.09 7.30 16 5 O -0.53 -9.50 15.91 -14.36 -0.23 -9.73 16 6 N -0.61 -8.21 2.95 -172.20 -0.51 -8.72 16 7 C 0.10 1.40 6.59 -3.60 -0.02 1.37 16 8 C 0.10 1.45 6.59 -3.60 -0.02 1.43 16 9 N -0.62 -10.30 2.94 -172.20 -0.51 -10.81 16 10 C 0.54 10.96 6.80 -10.99 -0.07 10.89 16 11 O -0.55 -12.39 14.33 5.56 0.08 -12.31 16 12 C 0.03 0.72 1.05 -94.08 -0.10 0.62 16 13 H 0.06 1.15 3.71 -51.93 -0.19 0.96 16 14 C -0.51 -12.18 7.74 -34.44 -0.27 -12.44 16 15 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 16 C 0.09 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.88 -23.38 13.96 55.43 0.77 -22.60 16 18 Si 0.85 17.68 26.01 -169.99 -4.42 13.26 16 19 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.25 -4.96 4.82 56.52 0.27 -4.68 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.04 -0.83 4.53 -104.63 -0.47 -1.31 16 23 C -0.06 -1.36 7.98 -39.58 -0.32 -1.68 16 24 C -0.13 -2.46 10.05 -39.58 -0.40 -2.85 16 25 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.13 -2.32 10.05 -39.59 -0.40 -2.72 16 27 C -0.13 -2.58 8.88 -39.59 -0.35 -2.93 16 28 C 0.10 1.40 6.38 -3.35 -0.02 1.38 16 29 C 0.09 1.15 6.52 -3.35 -0.02 1.13 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.70 7.72 -51.93 -0.40 0.30 16 34 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.37 7.00 -51.93 -0.36 1.01 16 37 H 0.10 1.59 6.99 -51.93 -0.36 1.22 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.12 2.72 7.62 -52.49 -0.40 2.32 16 41 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.11 1.98 6.94 -52.49 -0.36 1.61 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.11 1.80 4.17 -51.93 -0.22 1.58 16 47 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.09 0.85 5.91 -51.93 -0.31 0.54 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -31.76 383.10 -8.30 -40.06 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.93 Total: 8.87 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.76 Total: 1.40 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.24 Total: -42.13 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.71 Total: -27.24 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -4.42 Total: 13.26 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.76 -8.30 -40.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362129337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.705 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds