Wall clock time and date at job start Sat Apr 11 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99939 * 2 1 4 4 C 1.50699 * 109.47440 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99427 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.46963 * 120.59505 * 180.02562 * 6 4 3 8 8 C 1.53368 * 108.63500 * 235.25102 * 7 6 4 9 9 N 1.46965 * 108.63334 * 310.57078 * 8 7 6 10 10 C 1.34774 * 120.59512 * 235.20446 * 9 8 7 11 11 O 1.21280 * 120.00055 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00027 * 180.02562 * 10 9 8 13 13 H 1.09003 * 109.47396 * 37.43631 * 12 10 9 14 14 C 1.50702 * 109.47270 * 277.43754 * 12 10 9 15 15 H 1.08007 * 119.99544 * 327.51851 * 14 12 10 16 16 C 1.37879 * 120.00733 * 147.51784 * 14 12 10 17 17 N 1.31507 * 120.00435 * 174.52787 * 16 14 12 18 18 Si 1.86800 * 119.99371 * 354.52835 * 16 14 12 19 19 H 1.48494 * 109.47464 * 273.11258 * 18 16 14 20 20 H 1.48504 * 109.47514 * 33.11833 * 18 16 14 21 21 H 1.48506 * 109.46980 * 153.11298 * 18 16 14 22 22 C 1.50701 * 109.47527 * 157.43565 * 12 10 9 23 23 C 1.38238 * 119.99405 * 64.16204 * 22 12 10 24 24 C 1.38245 * 119.99678 * 179.81173 * 23 22 12 25 25 C 1.38239 * 119.99444 * 0.39590 * 24 23 22 26 26 C 1.38233 * 120.00263 * 359.85801 * 25 24 23 27 27 C 1.38227 * 120.00395 * 244.43418 * 22 12 10 28 28 C 1.46962 * 118.81050 * 55.48215 * 9 8 7 29 29 C 1.46965 * 120.59609 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47461 * 299.99949 * 1 2 3 32 32 H 1.09000 * 109.47040 * 60.00356 * 1 2 3 33 33 H 1.08999 * 109.47177 * 59.99496 * 3 2 1 34 34 H 1.08999 * 109.46693 * 299.99800 * 3 2 1 35 35 H 1.09004 * 109.61269 * 115.50391 * 7 6 4 36 36 H 1.09007 * 109.74843 * 355.07626 * 7 6 4 37 37 H 1.09000 * 109.60824 * 190.83120 * 8 7 6 38 38 H 1.08994 * 109.61479 * 70.32189 * 8 7 6 39 39 H 0.96999 * 120.00300 * 179.97438 * 17 16 14 40 40 H 1.07992 * 120.00660 * 0.02562 * 23 22 12 41 41 H 1.07992 * 120.00274 * 180.23010 * 24 23 22 42 42 H 1.08004 * 119.99536 * 179.83364 * 25 24 23 43 43 H 1.08001 * 119.99991 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99965 * 359.97438 * 27 22 12 45 45 H 1.09005 * 109.61235 * 64.26127 * 28 9 8 46 46 H 1.08993 * 109.61172 * 184.77447 * 28 9 8 47 47 H 1.08990 * 109.61239 * 244.49654 * 29 6 4 48 48 H 1.09000 * 109.60744 * 5.00970 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7425 2.1961 0.0003 8 6 6.2882 2.9893 1.1941 9 7 5.6700 4.3226 1.1940 10 6 6.4339 5.4330 1.1945 11 8 7.6429 5.3372 1.1946 12 6 5.7858 6.7934 1.1951 13 1 4.8928 6.7703 1.8197 14 6 5.4038 7.1685 -0.2137 15 1 6.0059 6.8309 -1.0444 16 6 4.2859 7.9424 -0.4421 17 7 4.0123 8.3596 -1.6589 18 14 3.1598 8.3983 0.9769 19 1 2.1526 7.3252 1.1741 20 1 3.9635 8.5566 2.2156 21 1 2.4681 9.6759 0.6691 22 6 6.7542 7.8111 1.7407 23 6 7.9282 8.0809 1.0626 24 6 8.8148 9.0172 1.5611 25 6 8.5310 9.6776 2.7419 26 6 7.3595 9.4039 3.4227 27 6 6.4712 8.4705 2.9221 28 6 4.2039 4.4234 1.1996 29 6 3.6581 3.6302 -0.0003 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 6.1379 2.6117 -0.9266 36 1 6.0399 1.1511 0.0887 37 1 7.3701 3.0878 1.1041 38 1 6.0415 2.4716 2.1209 39 1 3.2256 8.9038 -1.8196 40 1 8.1513 7.5628 0.1417 41 1 9.7302 9.2308 1.0295 42 1 9.2249 10.4072 3.1328 43 1 7.1380 9.9196 4.3454 44 1 5.5558 8.2568 3.4540 45 1 3.8119 4.0054 2.1269 46 1 3.9087 5.4691 1.1134 47 1 3.9053 4.1477 -0.9271 48 1 2.5763 3.5317 0.0894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362129337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:42 Heat of formation + Delta-G solvation = -88.868017 kcal Electronic energy + Delta-G solvation = -31354.101878 eV Core-core repulsion = 27180.994309 eV Total energy + Delta-G solvation = -4173.107570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68306 -40.81337 -39.58557 -38.56183 -37.78326 -35.62343 -35.00306 -33.46094 -32.60092 -31.60643 -30.16824 -29.63064 -28.36163 -26.77532 -25.50614 -24.77382 -23.75258 -23.33262 -22.25874 -20.96033 -19.61260 -19.01805 -18.61300 -17.80361 -17.72804 -17.37934 -17.29882 -16.95693 -16.49080 -16.37994 -15.97929 -15.97096 -15.70083 -15.50753 -15.38771 -14.80972 -14.65830 -14.42556 -14.19073 -14.10337 -13.99306 -13.74474 -13.40014 -13.33964 -13.15067 -12.91252 -12.75485 -12.58975 -12.45999 -12.37913 -12.28578 -12.09655 -11.90433 -11.59100 -11.45728 -10.89409 -10.76067 -10.70472 -10.55250 -10.30498 -9.60916 -9.40941 -9.32548 -8.29115 -6.38667 0.65030 0.72266 1.36449 1.44214 1.46731 1.53235 1.54924 1.82201 2.18181 2.36599 2.89137 3.00116 3.17268 3.48711 3.71080 3.77796 4.04053 4.08095 4.13426 4.15030 4.20767 4.22417 4.25564 4.33267 4.36895 4.42942 4.48131 4.51384 4.53906 4.59771 4.62168 4.70783 4.76347 4.84528 4.89056 4.92176 4.95257 5.21975 5.28237 5.34737 5.43609 5.57295 5.71683 5.76986 5.98407 6.01229 6.20026 6.26344 6.31405 6.47283 6.64254 7.01490 7.25449 7.32907 8.85559 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003410 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.444713 B = 8208.930355 C = 9343.235151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.044 3.956 4 C 0.514 3.486 5 O -0.571 6.571 6 N -0.605 5.605 7 C 0.105 3.895 8 C 0.104 3.896 9 N -0.613 5.613 10 C 0.533 3.467 11 O -0.584 6.584 12 C 0.041 3.959 13 H 0.077 0.923 14 C -0.498 4.498 15 H 0.025 0.975 16 C 0.040 3.960 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.229 1.229 20 H -0.232 1.232 21 H -0.296 1.296 22 C -0.068 4.068 23 C -0.096 4.096 24 C -0.140 4.140 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.145 4.145 28 C 0.090 3.910 29 C 0.094 3.906 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 -6.340 9.443 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.035 4.035 4 C 0.303 3.697 5 O -0.450 6.450 6 N -0.339 5.339 7 C -0.018 4.018 8 C -0.019 4.019 9 N -0.346 5.346 10 C 0.324 3.676 11 O -0.464 6.464 12 C 0.019 3.981 13 H 0.095 0.905 14 C -0.536 4.536 15 H 0.043 0.957 16 C -0.160 4.160 17 N -0.569 5.569 18 Si 0.728 3.272 19 H -0.152 1.152 20 H -0.155 1.155 21 H -0.223 1.223 22 C -0.069 4.069 23 C -0.115 4.115 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.163 4.163 28 C -0.033 4.033 29 C -0.029 4.029 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.146 0.854 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.858 -7.067 9.312 13.553 hybrid contribution -0.326 0.645 -0.585 0.930 sum -7.184 -6.422 8.726 13.000 Atomic orbital electron populations 1.23051 0.78197 1.04237 1.01703 1.87955 1.22206 1.26411 1.95790 1.22428 0.88876 0.86962 1.05267 1.20916 0.90267 0.83248 0.75237 1.90682 1.75587 1.27740 1.51002 1.48059 1.06566 1.06339 1.72930 1.21873 0.79643 1.01925 0.98367 1.21898 0.99299 0.82185 0.98496 1.48000 1.07434 1.05243 1.73892 1.21208 0.86609 0.87053 0.72728 1.90558 1.15952 1.87641 1.52215 1.18284 0.94498 0.87723 0.97579 0.90525 1.20270 1.10714 1.33722 0.88888 0.95673 1.25707 0.98531 0.93812 0.97943 1.70015 1.28026 1.35817 1.23009 0.86369 0.80174 0.79281 0.81338 1.15225 1.15502 1.22318 1.20210 0.94917 0.97900 0.93873 1.20846 0.94649 0.97169 0.98823 1.21349 0.99728 0.97079 0.97621 1.21341 0.98073 1.00642 0.95236 1.21367 0.94354 0.98099 1.00805 1.21317 1.00530 0.98703 0.95724 1.22446 0.78873 1.02789 0.99232 1.22394 0.99897 0.81265 0.99322 0.88554 0.92017 0.92442 0.86849 0.87760 0.91962 0.87958 0.89325 0.89685 0.92082 0.89568 0.85273 0.83443 0.83372 0.85431 0.88194 0.88447 0.91267 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -9.31 10.24 -129.94 -1.33 -10.64 16 3 C 0.04 0.82 4.76 71.24 0.34 1.16 16 4 C 0.51 13.91 7.77 87.66 0.68 14.59 16 5 O -0.57 -20.47 15.91 15.99 0.25 -20.21 16 6 N -0.60 -15.66 2.95 -817.10 -2.41 -18.07 16 7 C 0.11 2.98 6.59 86.41 0.57 3.55 16 8 C 0.10 3.06 6.59 86.41 0.57 3.62 16 9 N -0.61 -20.45 2.94 -817.12 -2.40 -22.85 16 10 C 0.53 22.34 6.80 87.66 0.60 22.94 16 11 O -0.58 -27.78 14.33 -3.03 -0.04 -27.83 16 12 C 0.04 1.74 1.05 -13.03 -0.01 1.72 16 13 H 0.08 2.92 3.71 -2.39 -0.01 2.91 16 14 C -0.50 -25.17 7.74 25.60 0.20 -24.97 16 15 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 16 C 0.04 2.02 5.47 84.66 0.46 2.48 16 17 N -0.93 -51.64 13.96 21.45 0.30 -51.34 16 18 Si 0.91 35.11 26.01 68.60 1.78 36.90 16 19 H -0.23 -7.36 7.11 99.48 0.71 -6.66 16 20 H -0.23 -8.24 4.82 99.48 0.48 -7.76 16 21 H -0.30 -12.19 7.11 99.48 0.71 -11.49 16 22 C -0.07 -2.92 4.53 -19.87 -0.09 -3.01 16 23 C -0.10 -4.29 7.98 22.27 0.18 -4.11 16 24 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 25 C -0.14 -4.17 10.05 22.27 0.22 -3.95 16 26 C -0.13 -3.98 10.05 22.27 0.22 -3.75 16 27 C -0.14 -5.27 8.88 22.27 0.20 -5.07 16 28 C 0.09 2.38 6.38 86.58 0.55 2.93 16 29 C 0.09 2.22 6.52 86.58 0.56 2.79 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 1.39 7.72 -2.39 -0.02 1.37 16 34 H 0.10 1.50 7.91 -2.39 -0.02 1.48 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 2.87 7.00 -2.38 -0.02 2.86 16 37 H 0.09 2.87 6.99 -2.39 -0.02 2.85 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.27 14.03 8.31 -92.71 -0.77 13.25 16 40 H 0.09 4.29 7.62 -2.91 -0.02 4.27 16 41 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 44 H 0.13 4.10 6.94 -2.91 -0.02 4.08 16 45 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.10 2.92 4.17 -2.39 -0.01 2.91 16 47 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.13 1.97 5.91 -2.39 -0.01 1.96 16 Total: -1.00 -75.55 383.10 3.63 -71.92 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.75 Total: 34.52 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.72 Total: 7.60 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -4.51 Total: -92.26 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -1.12 Total: -58.68 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 1.78 Total: 36.90 kcal Total: -75.55 3.63 -71.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362129337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.948 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds