Wall clock time and date at job start Sat Apr 11 2020 07:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47418 * 270.00590 * 3 2 1 5 5 H 1.48504 * 109.47017 * 30.00253 * 3 2 1 6 6 H 1.48501 * 109.47277 * 150.00273 * 3 2 1 7 7 C 1.37873 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99916 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00328 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47717 * 179.97438 * 9 7 2 11 11 C 1.46893 * 111.00515 * 169.99879 * 10 9 7 12 12 C 1.53235 * 109.34533 * 187.25437 * 11 10 9 13 13 N 1.47087 * 108.51844 * 306.17120 * 12 11 10 14 14 C 1.34775 * 120.87944 * 231.20394 * 13 12 11 15 15 O 1.21551 * 119.99985 * 356.18674 * 14 13 12 16 16 C 1.47844 * 120.00072 * 176.18978 * 14 13 12 17 17 C 1.39576 * 120.14498 * 49.34507 * 16 14 13 18 18 C 1.37959 * 119.85501 * 179.79024 * 17 16 14 19 19 C 1.38358 * 120.14130 * 0.49387 * 18 17 16 20 20 C 1.50697 * 119.85232 * 179.76282 * 19 18 17 21 21 N 1.46502 * 109.47218 * 269.97803 * 20 19 18 22 22 C 1.34779 * 120.00244 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00109 * 180.02562 * 22 21 20 24 24 O 1.21588 * 119.99502 * 359.97438 * 22 21 20 25 25 C 1.38362 * 120.29277 * 359.74374 * 19 18 17 26 26 C 1.37953 * 120.14537 * 0.02562 * 25 19 18 27 27 C 1.47072 * 118.23691 * 51.18407 * 13 12 11 28 28 C 1.46899 * 110.99845 * 294.30443 * 10 9 7 29 29 H 0.97003 * 119.99725 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47291 * 59.99347 * 9 7 2 31 31 H 1.09006 * 109.47048 * 300.00266 * 9 7 2 32 32 H 1.08996 * 109.49170 * 307.21618 * 11 10 9 33 33 H 1.09003 * 109.49439 * 67.29029 * 11 10 9 34 34 H 1.08999 * 109.62958 * 65.87647 * 12 11 10 35 35 H 1.08997 * 109.63119 * 186.46362 * 12 11 10 36 36 H 1.08003 * 120.07069 * 0.02562 * 17 16 14 37 37 H 1.07997 * 119.92675 * 180.23182 * 18 17 16 38 38 H 1.08997 * 109.47530 * 29.97776 * 20 19 18 39 39 H 1.09004 * 109.47080 * 149.97889 * 20 19 18 40 40 H 0.97001 * 120.00143 * 359.97438 * 21 20 19 41 41 H 0.97001 * 120.00277 * 359.97438 * 23 22 21 42 42 H 0.96998 * 119.99791 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.92347 * 179.97438 * 25 19 18 44 44 H 1.07999 * 120.07204 * 180.02562 * 26 25 19 45 45 H 1.09000 * 109.63177 * 189.10721 * 27 13 12 46 46 H 1.09001 * 109.63090 * 68.52225 * 27 13 12 47 47 H 1.09004 * 109.49157 * 292.70255 * 28 10 9 48 48 H 1.08998 * 109.49794 * 52.75306 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 5.4499 -2.6253 -0.2397 12 6 5.8896 -4.0831 -0.4124 13 7 5.4264 -4.8519 0.7529 14 6 6.2769 -5.6312 1.4499 15 8 7.4268 -5.7603 1.0777 16 6 5.8111 -6.3293 2.6671 17 6 4.6291 -7.0710 2.6408 18 6 4.2023 -7.7236 3.7790 19 6 4.9380 -7.6355 4.9474 20 6 4.4630 -8.3465 6.1883 21 7 3.5913 -7.4556 6.9582 22 6 3.0461 -7.8807 8.1152 23 7 2.2438 -7.0612 8.8232 24 8 3.2773 -9.0038 8.5196 25 6 6.1080 -6.8977 4.9816 26 6 6.5483 -6.2443 3.8492 27 6 4.0107 -4.7472 1.1376 28 6 3.6450 -3.2632 1.2492 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8746 -0.6801 -0.8912 32 1 5.6877 -2.0642 -1.1434 33 1 5.9728 -2.1859 0.6098 34 1 5.4484 -4.4935 -1.3206 35 1 6.9766 -4.1327 -0.4751 36 1 4.0518 -7.1372 1.7304 37 1 3.2899 -8.3009 3.7589 38 1 3.9087 -9.2412 5.9048 39 1 5.3222 -8.6290 6.7966 40 1 3.4072 -6.5595 6.6358 41 1 2.0591 -6.1654 8.5004 42 1 1.8517 -7.3670 9.6561 43 1 6.6774 -6.8326 5.8971 44 1 7.4620 -5.6691 3.8771 45 1 3.8555 -5.2358 2.0995 46 1 3.3889 -5.2214 0.3782 47 1 4.1930 -2.8149 2.0780 48 1 2.5740 -3.1644 1.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363519533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:53 Heat of formation + Delta-G solvation = -21.471082 kcal Electronic energy + Delta-G solvation = -29825.251324 eV Core-core repulsion = 25687.359056 eV Total energy + Delta-G solvation = -4137.892268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75307 -40.11524 -38.94364 -37.61984 -35.25708 -34.59238 -33.97512 -32.55283 -31.83270 -31.38903 -30.63839 -28.86389 -27.01588 -25.61563 -23.71621 -22.94112 -22.78710 -21.59266 -21.39578 -20.64642 -19.20630 -18.72323 -17.79845 -17.47595 -16.92631 -16.44629 -16.02006 -15.68156 -15.42597 -15.19522 -14.91543 -14.80662 -14.66387 -14.62735 -14.28868 -14.03499 -13.85811 -13.62254 -13.41963 -13.15061 -12.98226 -12.69142 -12.48725 -12.21104 -11.90447 -11.63595 -11.45084 -11.25839 -11.17647 -10.86977 -10.71144 -10.65214 -10.42662 -10.05913 -9.98871 -9.91122 -9.42662 -9.41532 -9.28280 -9.13771 -8.67498 -8.62366 -7.55437 -6.15810 -4.14054 0.55657 1.02715 2.45239 2.70547 2.87982 2.95812 3.20766 3.28775 3.30117 3.45867 4.16235 4.19574 4.32506 4.38424 4.45558 4.55056 4.61247 4.93324 4.99197 5.13375 5.15720 5.24427 5.25539 5.31153 5.37820 5.46183 5.52433 5.60370 5.65680 5.69309 5.87303 5.90898 6.03418 6.03699 6.09381 6.14501 6.26552 6.33397 6.33599 6.47234 6.53315 6.56361 6.72147 6.83907 7.35537 7.45321 7.58299 7.72908 7.86642 8.06546 8.27111 8.52309 8.90828 9.45677 10.96909 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002610 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.645031 B =10724.961106 C =12991.842769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.118 3.882 13 N -0.600 5.600 14 C 0.556 3.444 15 O -0.543 6.543 16 C -0.109 4.109 17 C -0.091 4.091 18 C -0.102 4.102 19 C -0.096 4.096 20 C 0.179 3.821 21 N -0.741 5.741 22 C 0.706 3.294 23 N -0.868 5.868 24 O -0.597 6.597 25 C -0.102 4.102 26 C -0.073 4.073 27 C 0.100 3.900 28 C 0.050 3.950 29 H 0.264 0.736 30 H -0.011 1.011 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.400 0.600 41 H 0.399 0.601 42 H 0.415 0.585 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -13.318 12.108 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.091 4.091 12 C -0.004 4.004 13 N -0.332 5.332 14 C 0.344 3.656 15 O -0.421 6.421 16 C -0.112 4.112 17 C -0.109 4.109 18 C -0.120 4.120 19 C -0.097 4.097 20 C 0.056 3.944 21 N -0.398 5.398 22 C 0.404 3.596 23 N -0.435 5.435 24 O -0.476 6.476 25 C -0.121 4.121 26 C -0.091 4.091 27 C -0.023 4.023 28 C -0.079 4.079 29 H 0.074 0.926 30 H 0.006 0.994 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.234 0.766 41 H 0.227 0.773 42 H 0.247 0.753 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.819 -14.491 11.710 20.613 hybrid contribution 0.309 2.323 0.576 2.413 sum 9.128 -12.168 12.285 19.553 Atomic orbital electron populations 1.69886 1.06107 1.26961 1.50719 1.24887 0.94732 0.98861 0.94716 0.86880 0.80256 0.84033 0.78684 1.20074 1.21158 1.19346 1.20988 0.88545 0.94735 1.50785 0.90054 1.20181 0.97193 0.83733 0.95241 1.61898 1.10098 1.19331 1.33784 1.22463 0.90387 0.95281 1.01008 1.21782 1.00301 0.90787 0.87505 1.48178 1.10329 1.44772 1.29916 1.18378 0.85112 0.79059 0.83041 1.90772 1.18345 1.63444 1.69577 1.19992 0.96394 1.00390 0.94468 1.21400 0.94483 0.95883 0.99136 1.21047 0.99812 0.99180 0.91996 1.19995 0.95783 0.98931 0.94982 1.20057 0.93909 0.91719 0.88759 1.45153 1.52786 1.18569 1.23303 1.15956 0.78887 0.84366 0.80398 1.42998 1.54092 1.18185 1.28272 1.90980 1.66018 1.19318 1.71242 1.21030 0.96058 0.96610 0.98402 1.21145 0.98839 0.97980 0.91182 1.22334 0.80203 0.98500 1.01214 1.22372 1.03041 0.91665 0.90823 0.92565 0.99360 0.95579 0.89866 0.95437 0.90499 0.89216 0.84705 0.84985 0.90384 0.90477 0.76555 0.77345 0.75318 0.85170 0.85092 0.89231 0.90180 0.95672 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.96 55.43 0.77 -25.47 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.51 -13.61 8.96 -34.44 -0.31 -13.92 16 8 H 0.08 2.33 7.37 -52.49 -0.39 1.94 16 9 C 0.16 3.69 3.79 -4.98 -0.02 3.67 16 10 N -0.53 -10.04 4.62 -235.77 -1.09 -11.13 16 11 C 0.04 0.61 5.62 -3.71 -0.02 0.59 16 12 C 0.12 1.69 6.59 -3.60 -0.02 1.67 16 13 N -0.60 -8.40 3.01 -173.58 -0.52 -8.92 16 14 C 0.56 7.96 7.26 -12.33 -0.09 7.87 16 15 O -0.54 -9.40 16.50 5.32 0.09 -9.31 16 16 C -0.11 -1.25 5.04 -104.97 -0.53 -1.78 16 17 C -0.09 -0.84 7.37 -39.18 -0.29 -1.13 16 18 C -0.10 -0.78 9.68 -39.64 -0.38 -1.17 16 19 C -0.10 -0.72 5.25 -104.53 -0.55 -1.27 16 20 C 0.18 1.32 5.79 -5.19 -0.03 1.29 16 21 N -0.74 -5.17 5.55 -66.41 -0.37 -5.54 16 22 C 0.71 6.45 8.84 -86.92 -0.77 5.68 16 23 N -0.87 -4.63 8.88 27.63 0.25 -4.38 16 24 O -0.60 -8.18 17.18 5.29 0.09 -8.09 16 25 C -0.10 -0.81 9.68 -39.64 -0.38 -1.20 16 26 C -0.07 -0.73 9.73 -39.19 -0.38 -1.11 16 27 C 0.10 1.31 5.42 -3.60 -0.02 1.29 16 28 C 0.05 0.84 5.46 -3.70 -0.02 0.82 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 31 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 32 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.26 7.08 -51.93 -0.37 0.90 16 36 H 0.14 1.15 6.97 -52.48 -0.37 0.78 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.40 2.06 8.48 -40.82 -0.35 1.71 16 41 H 0.40 1.09 8.84 -40.82 -0.36 0.73 16 42 H 0.41 1.88 8.93 -40.82 -0.36 1.51 16 43 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.09 0.98 4.66 -51.93 -0.24 0.74 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -35.06 390.67 -10.40 -45.46 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.92 Total: 2.47 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.91 Total: 3.14 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.96 Total: -55.46 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.18 Total: -17.41 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.06 -10.40 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363519533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.988 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds