Wall clock time and date at job start Sat Apr 11 2020 07:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47418 * 270.00590 * 3 2 1 5 5 H 1.48504 * 109.47017 * 30.00253 * 3 2 1 6 6 H 1.48501 * 109.47277 * 150.00273 * 3 2 1 7 7 C 1.37873 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99916 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00328 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47717 * 179.97438 * 9 7 2 11 11 C 1.46893 * 111.00515 * 169.99879 * 10 9 7 12 12 C 1.53235 * 109.34533 * 187.25437 * 11 10 9 13 13 N 1.47087 * 108.51844 * 306.17120 * 12 11 10 14 14 C 1.34775 * 120.87944 * 231.20394 * 13 12 11 15 15 O 1.21551 * 119.99985 * 356.18674 * 14 13 12 16 16 C 1.47844 * 120.00072 * 176.18978 * 14 13 12 17 17 C 1.39576 * 120.14498 * 49.34507 * 16 14 13 18 18 C 1.37959 * 119.85501 * 179.79024 * 17 16 14 19 19 C 1.38358 * 120.14130 * 0.49387 * 18 17 16 20 20 C 1.50697 * 119.85232 * 179.76282 * 19 18 17 21 21 N 1.46502 * 109.47218 * 269.97803 * 20 19 18 22 22 C 1.34779 * 120.00244 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00109 * 180.02562 * 22 21 20 24 24 O 1.21588 * 119.99502 * 359.97438 * 22 21 20 25 25 C 1.38362 * 120.29277 * 359.74374 * 19 18 17 26 26 C 1.37953 * 120.14537 * 0.02562 * 25 19 18 27 27 C 1.47072 * 118.23691 * 51.18407 * 13 12 11 28 28 C 1.46899 * 110.99845 * 294.30443 * 10 9 7 29 29 H 0.97003 * 119.99725 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47291 * 59.99347 * 9 7 2 31 31 H 1.09006 * 109.47048 * 300.00266 * 9 7 2 32 32 H 1.08996 * 109.49170 * 307.21618 * 11 10 9 33 33 H 1.09003 * 109.49439 * 67.29029 * 11 10 9 34 34 H 1.08999 * 109.62958 * 65.87647 * 12 11 10 35 35 H 1.08997 * 109.63119 * 186.46362 * 12 11 10 36 36 H 1.08003 * 120.07069 * 0.02562 * 17 16 14 37 37 H 1.07997 * 119.92675 * 180.23182 * 18 17 16 38 38 H 1.08997 * 109.47530 * 29.97776 * 20 19 18 39 39 H 1.09004 * 109.47080 * 149.97889 * 20 19 18 40 40 H 0.97001 * 120.00143 * 359.97438 * 21 20 19 41 41 H 0.97001 * 120.00277 * 359.97438 * 23 22 21 42 42 H 0.96998 * 119.99791 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.92347 * 179.97438 * 25 19 18 44 44 H 1.07999 * 120.07204 * 180.02562 * 26 25 19 45 45 H 1.09000 * 109.63177 * 189.10721 * 27 13 12 46 46 H 1.09001 * 109.63090 * 68.52225 * 27 13 12 47 47 H 1.09004 * 109.49157 * 292.70255 * 28 10 9 48 48 H 1.08998 * 109.49794 * 52.75306 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 5.4499 -2.6253 -0.2397 12 6 5.8896 -4.0831 -0.4124 13 7 5.4264 -4.8519 0.7529 14 6 6.2769 -5.6312 1.4499 15 8 7.4268 -5.7603 1.0777 16 6 5.8111 -6.3293 2.6671 17 6 4.6291 -7.0710 2.6408 18 6 4.2023 -7.7236 3.7790 19 6 4.9380 -7.6355 4.9474 20 6 4.4630 -8.3465 6.1883 21 7 3.5913 -7.4556 6.9582 22 6 3.0461 -7.8807 8.1152 23 7 2.2438 -7.0612 8.8232 24 8 3.2773 -9.0038 8.5196 25 6 6.1080 -6.8977 4.9816 26 6 6.5483 -6.2443 3.8492 27 6 4.0107 -4.7472 1.1376 28 6 3.6450 -3.2632 1.2492 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8746 -0.6801 -0.8912 32 1 5.6877 -2.0642 -1.1434 33 1 5.9728 -2.1859 0.6098 34 1 5.4484 -4.4935 -1.3206 35 1 6.9766 -4.1327 -0.4751 36 1 4.0518 -7.1372 1.7304 37 1 3.2899 -8.3009 3.7589 38 1 3.9087 -9.2412 5.9048 39 1 5.3222 -8.6290 6.7966 40 1 3.4072 -6.5595 6.6358 41 1 2.0591 -6.1654 8.5004 42 1 1.8517 -7.3670 9.6561 43 1 6.6774 -6.8326 5.8971 44 1 7.4620 -5.6691 3.8771 45 1 3.8555 -5.2358 2.0995 46 1 3.3889 -5.2214 0.3782 47 1 4.1930 -2.8149 2.0780 48 1 2.5740 -3.1644 1.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363519533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:52 Heat of formation + Delta-G solvation = -49.428108 kcal Electronic energy + Delta-G solvation = -29826.463632 eV Core-core repulsion = 25687.359056 eV Total energy + Delta-G solvation = -4139.104576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71307 -40.87110 -39.83709 -38.90754 -36.14011 -35.85899 -34.63201 -34.41657 -32.81588 -32.08725 -31.67984 -30.48649 -28.04574 -26.87926 -24.87279 -24.02130 -23.62067 -22.94416 -22.14189 -21.83055 -20.31542 -19.32964 -18.94304 -18.55366 -18.34262 -17.50181 -16.86559 -16.57455 -16.43562 -16.30293 -16.04803 -15.88962 -15.78772 -15.64193 -15.42033 -15.16959 -15.06131 -14.50122 -14.46372 -14.35883 -14.26753 -13.75832 -13.58173 -13.51856 -13.13066 -12.88891 -12.65432 -12.54372 -12.33836 -12.23520 -12.08713 -11.93134 -11.85187 -11.53686 -11.41690 -11.01611 -10.76806 -10.70893 -10.02300 -9.97697 -9.91369 -9.78723 -9.08384 -8.27034 -6.29826 -0.19222 0.35316 1.35855 1.37233 1.46445 1.49994 1.83852 2.08100 2.19145 2.34744 2.73770 3.05349 3.14060 3.32071 3.63624 3.72526 3.79486 3.89656 3.98521 4.00358 4.19367 4.23565 4.28585 4.35351 4.38260 4.50646 4.64774 4.66175 4.70152 4.80290 4.81091 4.84176 4.91684 5.01385 5.03531 5.09874 5.21505 5.30310 5.40109 5.43096 5.49585 5.52960 5.82917 5.89318 5.92166 6.06996 6.24927 6.31871 6.59517 6.76410 6.96134 7.08289 7.33866 7.66514 8.88727 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002610 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.645031 B =10724.961106 C =12991.842769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.512 4.512 8 H 0.047 0.953 9 C 0.171 3.829 10 N -0.538 5.538 11 C 0.041 3.959 12 C 0.123 3.877 13 N -0.602 5.602 14 C 0.557 3.443 15 O -0.578 6.578 16 C -0.130 4.130 17 C -0.093 4.093 18 C -0.095 4.095 19 C -0.083 4.083 20 C 0.182 3.818 21 N -0.731 5.731 22 C 0.700 3.300 23 N -0.851 5.851 24 O -0.647 6.647 25 C -0.096 4.096 26 C -0.082 4.082 27 C 0.113 3.887 28 C 0.052 3.948 29 H 0.266 0.734 30 H -0.015 1.015 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.411 0.589 41 H 0.413 0.587 42 H 0.420 0.580 43 H 0.149 0.851 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.022 0.978 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -13.405 12.948 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.044 3.956 10 N -0.263 5.263 11 C -0.088 4.088 12 C 0.000 4.000 13 N -0.333 5.333 14 C 0.347 3.653 15 O -0.459 6.459 16 C -0.134 4.134 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.084 4.084 20 C 0.058 3.942 21 N -0.388 5.388 22 C 0.398 3.602 23 N -0.420 5.420 24 O -0.529 6.529 25 C -0.114 4.114 26 C -0.101 4.101 27 C -0.009 4.009 28 C -0.077 4.077 29 H 0.075 0.925 30 H 0.002 0.998 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.247 0.753 41 H 0.244 0.756 42 H 0.253 0.747 43 H 0.167 0.833 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.104 0.896 47 H 0.040 0.960 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.583 -14.543 12.543 21.463 hybrid contribution 0.028 2.267 0.361 2.296 sum 9.611 -12.275 12.904 20.238 Atomic orbital electron populations 1.70028 1.07915 1.28009 1.52510 1.25734 0.95491 1.02738 0.94534 0.85821 0.79304 0.79304 0.79121 1.19234 1.20929 1.17888 1.21206 0.90654 0.93462 1.49726 0.93437 1.19942 0.94600 0.86022 0.94986 1.61817 1.12186 1.17250 1.35064 1.22504 0.88205 0.96747 1.01294 1.21715 1.00510 0.89694 0.88052 1.48236 1.10581 1.44669 1.29811 1.18816 0.84476 0.78585 0.83426 1.90746 1.19828 1.64766 1.70589 1.19888 0.97919 1.01877 0.93667 1.21488 0.93829 0.95740 1.00060 1.21265 1.00309 0.98478 0.91282 1.20016 0.95345 0.98072 0.94948 1.20006 0.93926 0.91707 0.88559 1.45013 1.52201 1.18949 1.22630 1.16171 0.79160 0.84023 0.80833 1.42854 1.52751 1.18405 1.27944 1.90948 1.67859 1.21579 1.72509 1.21192 0.96149 0.95693 0.98362 1.21200 0.98806 0.98601 0.91515 1.22275 0.79807 0.95903 1.02909 1.22343 1.01586 0.93909 0.89867 0.92463 0.99767 0.95246 0.88870 0.95760 0.89797 0.88900 0.83932 0.82890 0.90487 0.90646 0.75258 0.75614 0.74734 0.83285 0.85564 0.86672 0.89571 0.95959 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.96 21.45 0.30 -55.90 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.94 42.10 27.47 68.60 1.88 43.99 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.51 -27.61 8.96 25.60 0.23 -27.38 16 8 H 0.05 2.82 7.37 -2.91 -0.02 2.80 16 9 C 0.17 7.69 3.79 85.56 0.32 8.01 16 10 N -0.54 -20.25 4.62 -899.84 -4.16 -24.41 16 11 C 0.04 1.28 5.62 86.38 0.49 1.76 16 12 C 0.12 3.36 6.59 86.35 0.57 3.93 16 13 N -0.60 -16.15 3.01 -821.35 -2.47 -18.62 16 14 C 0.56 15.45 7.26 86.79 0.63 16.08 16 15 O -0.58 -19.85 16.50 -3.88 -0.06 -19.91 16 16 C -0.13 -2.79 5.04 -20.09 -0.10 -2.89 16 17 C -0.09 -1.52 7.37 22.53 0.17 -1.35 16 18 C -0.10 -1.19 9.68 22.23 0.22 -0.98 16 19 C -0.08 -1.02 5.25 -19.81 -0.10 -1.12 16 20 C 0.18 2.27 5.79 85.63 0.50 2.77 16 21 N -0.73 -8.56 5.55 -482.29 -2.68 -11.24 16 22 C 0.70 11.68 8.84 179.05 1.58 13.26 16 23 N -0.85 -7.48 8.88 -184.75 -1.64 -9.12 16 24 O -0.65 -17.24 17.18 -3.99 -0.07 -17.31 16 25 C -0.10 -1.30 9.68 22.23 0.22 -1.08 16 26 C -0.08 -1.54 9.73 22.52 0.22 -1.32 16 27 C 0.11 2.83 5.42 86.35 0.47 3.30 16 28 C 0.05 1.72 5.46 86.38 0.47 2.20 16 29 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 30 H -0.02 -0.70 7.18 -2.39 -0.02 -0.72 16 31 H 0.03 1.30 7.40 -2.38 -0.02 1.29 16 32 H 0.09 2.67 7.99 -2.39 -0.02 2.66 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.53 7.08 -2.39 -0.02 2.51 16 36 H 0.14 2.08 6.97 -2.91 -0.02 2.06 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.41 3.08 8.48 -92.71 -0.79 2.30 16 41 H 0.41 1.27 8.84 -92.71 -0.82 0.45 16 42 H 0.42 3.13 8.93 -92.71 -0.83 2.31 16 43 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.12 2.30 4.66 -2.39 -0.01 2.29 16 46 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.08 3.06 6.67 -2.39 -0.02 3.05 16 Total: -1.00 -77.00 390.67 -4.03 -81.03 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.47 Total: 15.15 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.33 Total: 16.36 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -10.65 Total: -119.30 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.13 Total: -37.22 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.99 kcal Total: -77.00 -4.03 -81.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363519533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.600 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds