Wall clock time and date at job start Sat Apr 11 2020 07:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00035 * 2 1 4 4 H 1.48497 * 109.47020 * 239.99539 * 3 2 1 5 5 H 1.48500 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47109 * 119.99942 * 3 2 1 7 7 C 1.38820 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99432 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00023 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47467 * 185.00303 * 10 9 7 12 12 N 1.46508 * 110.01296 * 53.57444 * 11 10 9 13 13 C 1.34777 * 119.99753 * 65.01401 * 12 11 10 14 14 O 1.21583 * 120.00160 * 354.96062 * 13 12 11 15 15 C 1.47577 * 119.99601 * 174.95778 * 13 12 11 16 16 C 1.39767 * 120.07627 * 359.72476 * 15 13 12 17 17 C 1.37660 * 119.92046 * 179.80770 * 16 15 13 18 18 C 1.39133 * 120.07915 * 0.44711 * 17 16 15 19 19 N 1.39431 * 119.92460 * 179.76768 * 18 17 16 20 20 C 1.34782 * 119.99716 * 214.82236 * 19 18 17 21 21 N 1.34780 * 119.99962 * 185.37155 * 20 19 18 22 22 O 1.21579 * 120.00029 * 5.36161 * 20 19 18 23 23 C 1.39139 * 120.14679 * 359.78190 * 18 17 16 24 24 C 1.37650 * 120.07396 * 0.02562 * 23 18 17 25 25 C 1.54264 * 110.03246 * 292.13836 * 11 10 9 26 26 C 1.54886 * 104.19622 * 217.10562 * 25 11 10 27 27 C 1.54891 * 102.75091 * 37.93922 * 26 25 11 28 28 C 1.53868 * 110.03594 * 174.96884 * 11 10 9 29 29 H 0.96996 * 119.99532 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00085 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47625 * 64.99768 * 10 9 7 32 32 H 1.09009 * 109.47008 * 304.99894 * 10 9 7 33 33 H 0.96993 * 119.99978 * 245.00587 * 12 11 10 34 34 H 1.07995 * 120.03631 * 0.02562 * 16 15 13 35 35 H 1.08003 * 119.95486 * 180.18640 * 17 16 15 36 36 H 0.96993 * 120.00459 * 34.82038 * 19 18 17 37 37 H 0.96995 * 119.99537 * 359.97438 * 21 20 19 38 38 H 0.96994 * 119.99835 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.95932 * 179.97438 * 23 18 17 40 40 H 1.08011 * 120.03705 * 179.97438 * 24 23 18 41 41 H 1.09005 * 110.48156 * 335.78143 * 25 11 10 42 42 H 1.09000 * 110.48869 * 98.41942 * 25 11 10 43 43 H 1.09001 * 110.75386 * 279.62270 * 26 25 11 44 44 H 1.08998 * 110.75912 * 156.25312 * 26 25 11 45 45 H 1.09001 * 110.48606 * 203.38758 * 27 26 25 46 46 H 1.08994 * 110.48694 * 80.73858 * 27 26 25 47 47 H 1.09002 * 110.03420 * 238.57116 * 28 11 10 48 48 H 1.09002 * 110.03079 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0687 -4.8171 -0.1244 12 7 0.2086 -4.6178 -1.2936 13 6 0.7409 -4.6305 -2.5317 14 8 1.9453 -4.7153 -2.6748 15 6 -0.1382 -4.5414 -3.7137 16 6 -1.5233 -4.4497 -3.5511 17 6 -2.3401 -4.3628 -4.6558 18 6 -1.7889 -4.3755 -5.9333 19 7 -2.6196 -4.2922 -7.0501 20 6 -2.3022 -4.9597 -8.1772 21 7 -3.0445 -4.7944 -9.2899 22 8 -1.3463 -5.7108 -8.1902 23 6 -0.4108 -4.4715 -6.0988 24 6 0.4120 -4.5548 -4.9984 25 6 0.2100 -4.9205 1.1530 26 6 0.0282 -6.4438 1.3662 27 6 1.4081 -7.0138 0.9540 28 6 1.8304 -6.1480 -0.2509 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6151 -3.7540 0.9334 32 1 2.7508 -3.6772 -0.8397 33 1 -0.7439 -4.4770 -1.1766 34 1 -1.9521 -4.4435 -2.5599 35 1 -3.4103 -4.2889 -4.5308 36 1 -3.4257 -3.7539 -7.0159 37 1 -3.8073 -4.1953 -9.2794 38 1 -2.8164 -5.2750 -10.1009 39 1 0.0138 -4.4815 -7.0918 40 1 1.4817 -4.6297 -5.1275 41 1 0.7321 -4.4763 2.0006 42 1 -0.7560 -4.4381 1.0035 43 1 -0.7590 -6.8329 0.7204 44 1 -0.1842 -6.6649 2.4122 45 1 1.3165 -8.0592 0.6591 46 1 2.1237 -6.9078 1.7693 47 1 1.5595 -6.6462 -1.1819 48 1 2.9049 -5.9673 -0.2230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481911267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:03 Heat of formation + Delta-G solvation = -26.451733 kcal Electronic energy + Delta-G solvation = -30636.458343 eV Core-core repulsion = 26498.350097 eV Total energy + Delta-G solvation = -4138.108246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.88648 -40.08429 -38.59917 -37.15829 -34.90622 -34.23241 -34.00102 -33.11414 -31.13856 -30.80601 -29.60804 -28.55278 -27.73625 -24.50095 -23.97324 -22.86218 -22.12477 -21.53279 -20.68628 -20.34763 -18.91545 -18.64767 -18.32312 -17.56129 -17.00033 -16.27311 -16.00654 -15.62289 -15.10409 -14.95777 -14.78365 -14.42630 -14.32754 -14.16712 -13.88764 -13.64540 -13.41836 -13.13598 -12.97384 -12.70461 -12.50318 -12.39272 -11.90277 -11.54385 -11.26435 -11.09239 -10.89974 -10.84344 -10.75508 -10.70125 -10.63010 -10.37389 -10.36386 -10.34922 -10.12444 -9.99492 -9.60950 -9.33169 -8.95568 -8.72654 -8.47744 -8.15538 -6.77679 -5.67554 -2.92894 0.92319 1.43961 2.41845 2.71484 3.27586 3.50352 3.53723 3.55778 3.60094 3.98629 4.11958 4.65429 4.75984 4.80831 4.90318 4.91047 5.06191 5.16099 5.35771 5.38085 5.47883 5.59924 5.66674 5.70708 5.74318 5.84537 5.94805 5.97728 6.02752 6.03707 6.08988 6.12394 6.24928 6.35769 6.37810 6.39985 6.46520 6.49515 6.52895 6.55174 6.61762 6.69978 6.93509 7.02452 7.22923 7.44588 7.80234 8.01991 8.15455 8.52388 8.75157 9.63707 10.22624 10.58762 11.55745 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.003273 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.937630 B = 8553.375378 C =10742.152093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.227 4.227 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.145 3.855 11 C 0.170 3.830 12 N -0.704 5.704 13 C 0.565 3.435 14 O -0.531 6.531 15 C -0.138 4.138 16 C -0.062 4.062 17 C -0.154 4.154 18 C 0.179 3.821 19 N -0.684 5.684 20 C 0.704 3.296 21 N -0.863 5.863 22 O -0.572 6.572 23 C -0.129 4.129 24 C -0.040 4.040 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.252 0.748 30 H 0.381 0.619 31 H 0.020 0.980 32 H 0.044 0.956 33 H 0.394 0.606 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.408 0.592 37 H 0.399 0.601 38 H 0.418 0.582 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 -13.447 -11.298 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.016 3.984 11 C 0.084 3.916 12 N -0.356 5.356 13 C 0.353 3.647 14 O -0.409 6.409 15 C -0.142 4.142 16 C -0.082 4.082 17 C -0.175 4.175 18 C 0.084 3.916 19 N -0.332 5.332 20 C 0.403 3.597 21 N -0.431 5.431 22 O -0.448 6.448 23 C -0.149 4.149 24 C -0.059 4.059 25 C -0.157 4.157 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.229 0.771 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.244 0.756 37 H 0.227 0.773 38 H 0.251 0.749 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.468 -13.997 -11.304 20.330 hybrid contribution -1.167 1.619 -0.380 2.032 sum -10.634 -12.377 -11.683 20.070 Atomic orbital electron populations 1.69637 1.04967 1.25368 1.58699 1.24659 0.95511 0.97404 1.03606 0.86292 0.78514 0.83770 0.77807 1.21430 1.21833 1.21433 1.19197 0.90977 0.84260 1.41466 0.91484 1.42174 1.05582 0.99730 1.89329 1.21168 0.93483 0.85124 0.98579 1.21226 0.90919 0.95282 0.84143 1.45901 1.11180 1.73266 1.05217 1.17955 0.87686 0.76226 0.82875 1.90738 1.14517 1.49386 1.86260 1.20075 0.93556 1.06324 0.94235 1.21077 0.92334 0.96164 0.98576 1.20709 1.00002 1.06144 0.90601 1.17582 0.89791 0.98879 0.85382 1.42465 1.27754 1.51550 1.11411 1.15953 0.82833 0.80444 0.80495 1.42968 1.34728 1.52298 1.13111 1.91032 1.29715 1.40306 1.83728 1.21048 0.91342 1.02566 0.99954 1.21141 1.00738 0.93767 0.90296 1.22608 1.00115 0.95766 0.97209 1.22527 0.97222 0.95718 1.00755 1.22386 0.96981 0.98730 0.98107 1.22414 1.00736 0.94318 0.98128 0.93785 0.78545 0.96285 0.93832 0.77061 0.85162 0.85292 0.75636 0.77341 0.74926 0.84498 0.84343 0.89650 0.91047 0.91812 0.91700 0.92083 0.91613 0.91427 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -18.66 5.27 -59.91 -0.32 -18.97 16 10 C 0.14 3.16 4.63 -4.04 -0.02 3.14 16 11 C 0.17 2.88 0.57 -130.70 -0.07 2.81 16 12 N -0.70 -11.64 4.51 -47.59 -0.21 -11.85 16 13 C 0.57 10.39 6.81 -12.45 -0.08 10.30 16 14 O -0.53 -11.41 13.63 5.29 0.07 -11.34 16 15 C -0.14 -2.20 5.88 -104.95 -0.62 -2.82 16 16 C -0.06 -0.80 9.53 -39.22 -0.37 -1.18 16 17 C -0.15 -1.72 9.94 -39.46 -0.39 -2.11 16 18 C 0.18 2.15 6.25 -83.74 -0.52 1.63 16 19 N -0.68 -5.94 5.32 -14.22 -0.08 -6.02 16 20 C 0.70 6.96 8.55 -86.91 -0.74 6.22 16 21 N -0.86 -4.23 8.88 27.63 0.25 -3.98 16 22 O -0.57 -8.36 14.95 5.30 0.08 -8.28 16 23 C -0.13 -1.83 8.62 -39.46 -0.34 -2.17 16 24 C -0.04 -0.63 9.58 -39.23 -0.38 -1.00 16 25 C -0.12 -1.75 5.69 -25.07 -0.14 -1.89 16 26 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16 27 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 28 C -0.12 -1.79 5.22 -25.62 -0.13 -1.92 16 29 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.38 9.99 7.20 -40.82 -0.29 9.70 16 31 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 32 H 0.04 1.07 6.59 -51.92 -0.34 0.72 16 33 H 0.39 5.64 6.27 -40.82 -0.26 5.38 16 34 H 0.13 1.42 6.41 -52.49 -0.34 1.08 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.41 2.02 8.83 -40.82 -0.36 1.66 16 37 H 0.40 0.63 8.85 -40.82 -0.36 0.27 16 38 H 0.42 1.67 8.93 -40.82 -0.36 1.31 16 39 H 0.14 1.98 6.51 -52.48 -0.34 1.64 16 40 H 0.14 2.21 7.64 -52.48 -0.40 1.81 16 41 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 42 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.08 7.00 -51.93 -0.36 0.72 16 48 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -37.78 389.10 -9.75 -47.53 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -6.70 Total: 16.18 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -4.41 Total: 0.35 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: 0.36 Total: -68.42 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.15 Total: -19.62 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.78 -9.75 -47.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481911267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.082 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds