Wall clock time and date at job start Sat Apr 11 2020 07:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86807 * 119.99659 * 2 1 4 4 H 1.48498 * 109.46696 * 269.99324 * 3 2 1 5 5 H 1.48503 * 109.47165 * 29.99778 * 3 2 1 6 6 H 1.48504 * 109.46553 * 149.99588 * 3 2 1 7 7 C 1.37874 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00312 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99528 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46757 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47101 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47314 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00107 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00022 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00096 * 179.97438 * 13 12 11 16 16 C 1.39939 * 120.00031 * 184.53590 * 15 13 12 17 17 C 1.38940 * 120.03525 * 324.09481 * 16 15 13 18 18 C 1.38136 * 120.06513 * 180.02562 * 17 16 15 19 19 C 1.38186 * 120.14305 * 359.68351 * 18 17 16 20 20 C 1.38895 * 120.06473 * 0.59030 * 19 18 17 21 21 N 1.39948 * 120.03394 * 179.70124 * 20 19 18 22 22 C 1.46380 * 119.32917 * 112.01648 * 21 20 19 23 23 C 1.53240 * 109.15311 * 209.08418 * 22 21 20 24 24 C 1.53506 * 108.42799 * 304.38068 * 23 22 21 25 25 N 1.46380 * 109.01166 * 55.79166 * 24 23 22 26 26 C 1.34129 * 121.34262 * 330.54470 * 25 24 23 27 27 O 1.21587 * 118.69969 * 180.80517 * 26 25 24 28 28 C 1.38720 * 120.03443 * 144.11546 * 16 15 13 29 29 H 0.96994 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47615 * 60.00122 * 9 7 2 31 31 H 1.08995 * 109.47051 * 299.99570 * 9 7 2 32 32 H 1.08999 * 109.47323 * 60.00007 * 10 9 7 33 33 H 1.09000 * 109.47248 * 300.00139 * 10 9 7 34 34 H 1.08998 * 109.47249 * 60.00276 * 11 10 9 35 35 H 1.09000 * 109.47377 * 300.00297 * 11 10 9 36 36 H 0.97001 * 119.99660 * 0.02562 * 12 11 10 37 37 H 0.96998 * 119.99697 * 4.53941 * 15 13 12 38 38 H 1.07993 * 119.96511 * 0.02562 * 17 16 15 39 39 H 1.08001 * 119.92673 * 179.97438 * 18 17 16 40 40 H 1.07995 * 119.96678 * 180.31648 * 19 18 17 41 41 H 1.09002 * 109.52373 * 328.98702 * 22 21 20 42 42 H 1.09004 * 109.52273 * 89.11353 * 22 21 20 43 43 H 1.09002 * 109.62290 * 64.24049 * 23 22 21 44 44 H 1.08994 * 109.61973 * 184.79979 * 23 22 21 45 45 H 1.08998 * 109.70708 * 295.86261 * 24 23 22 46 46 H 1.09003 * 109.47576 * 175.58076 * 24 23 22 47 47 H 0.97005 * 119.32857 * 150.82262 * 25 24 23 48 48 H 1.08003 * 120.06835 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5516 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0027 13 6 7.3651 -4.2638 0.0023 14 8 8.1552 -3.3396 0.0019 15 7 7.8144 -5.5346 0.0032 16 6 9.1867 -5.7914 0.0986 17 6 10.0975 -4.9437 -0.5198 18 6 11.4522 -5.1969 -0.4265 19 6 11.9064 -6.2897 0.2871 20 6 11.0007 -7.1440 0.9027 21 7 11.4611 -8.2541 1.6199 22 6 11.2953 -8.2873 3.0739 23 6 12.4227 -9.1229 3.6895 24 6 12.4109 -10.5112 3.0346 25 7 12.5209 -10.3548 1.5833 26 6 12.0458 -9.2657 0.9610 27 8 12.1495 -9.1923 -0.2482 28 6 9.6391 -6.8928 0.8102 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6587 -3.1509 -0.8875 33 1 3.6580 -3.1497 0.8924 34 1 5.9150 -2.1219 0.8918 35 1 5.9150 -2.1233 -0.8881 36 1 5.4097 -4.7549 0.0026 37 1 7.1865 -6.2710 -0.0622 38 1 9.7459 -4.0860 -1.0738 39 1 12.1582 -4.5367 -0.9083 40 1 12.9664 -6.4821 0.3624 41 1 11.3370 -7.2722 3.4686 42 1 10.3324 -8.7348 3.3206 43 1 13.3808 -8.6364 3.5065 44 1 12.2594 -9.2240 4.7624 45 1 11.4798 -11.0238 3.2762 46 1 13.2551 -11.0941 3.4032 47 1 12.9424 -11.0548 1.0605 48 1 8.9331 -7.5537 1.2911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174183283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:52 Heat of formation + Delta-G solvation = -51.173044 kcal Electronic energy + Delta-G solvation = -28930.939398 eV Core-core repulsion = 24791.759155 eV Total energy + Delta-G solvation = -4139.180242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17129 -41.53382 -39.64495 -37.55566 -37.19416 -36.28472 -35.36815 -35.05598 -33.27388 -32.18538 -31.13380 -30.20658 -28.67702 -26.76048 -25.16441 -24.62361 -23.58300 -23.16700 -22.27413 -21.79243 -20.22211 -19.49608 -19.01506 -18.75001 -18.44052 -17.68774 -17.37038 -17.14986 -16.82447 -16.52078 -16.15062 -16.03140 -15.72850 -15.56362 -15.24055 -15.13007 -14.76559 -14.71967 -14.62726 -14.50269 -13.89045 -13.78401 -13.60093 -13.10792 -13.01178 -12.73016 -12.69722 -12.55659 -12.36036 -12.29168 -11.90812 -11.76981 -11.58789 -11.46871 -11.31964 -11.31009 -11.11546 -10.75019 -10.34507 -10.16194 -10.06533 -9.54809 -9.10322 -8.28374 -6.32193 0.22726 0.29784 1.38172 1.39654 1.42801 1.51436 1.67665 1.98530 2.04144 2.37387 2.71062 2.88215 3.07643 3.16898 3.75770 3.88414 3.93615 4.09354 4.13964 4.17002 4.23493 4.24172 4.35525 4.43688 4.52133 4.53356 4.60026 4.65078 4.78503 4.84391 4.90046 4.91658 5.05224 5.14837 5.21514 5.23517 5.33844 5.36137 5.44890 5.50430 5.53153 5.57998 5.65826 5.69710 5.92514 6.05049 6.08778 6.28511 6.70460 6.76017 6.94035 7.32758 7.42743 7.48659 8.87935 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.001589 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.637042 B =17620.915262 C =18026.499555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.531 4.531 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.146 3.854 12 N -0.724 5.724 13 C 0.700 3.300 14 O -0.613 6.613 15 N -0.673 5.673 16 C 0.167 3.833 17 C -0.135 4.135 18 C -0.092 4.092 19 C -0.128 4.128 20 C 0.165 3.835 21 N -0.577 5.577 22 C 0.101 3.899 23 C -0.146 4.146 24 C 0.103 3.897 25 N -0.728 5.728 26 C 0.703 3.297 27 O -0.637 6.637 28 C -0.143 4.143 29 H 0.266 0.734 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.413 0.587 37 H 0.423 0.577 38 H 0.125 0.875 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.420 0.580 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.570 -24.527 9.796 39.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.022 3.978 12 N -0.379 5.379 13 C 0.401 3.599 14 O -0.493 6.493 15 N -0.322 5.322 16 C 0.072 3.928 17 C -0.156 4.156 18 C -0.112 4.112 19 C -0.148 4.148 20 C 0.073 3.927 21 N -0.310 5.310 22 C -0.019 4.019 23 C -0.184 4.184 24 C -0.020 4.020 25 N -0.385 5.385 26 C 0.404 3.596 27 O -0.518 6.518 28 C -0.166 4.166 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.250 0.750 37 H 0.262 0.738 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.149 0.851 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.258 0.742 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 30.017 -23.426 9.358 39.209 hybrid contribution -0.774 0.027 -0.449 0.895 sum 29.242 -23.399 8.910 38.497 Atomic orbital electron populations 1.70060 1.08221 1.28092 1.52749 1.25979 0.95574 1.03414 0.94244 0.85710 0.79583 0.78546 0.79146 1.19355 1.21100 1.16990 1.21476 0.91960 0.93246 1.50188 0.94390 1.19469 0.93998 0.94694 0.96909 1.21481 0.91898 0.98123 1.02291 1.21209 0.94055 0.81017 1.01541 1.45043 1.04539 1.09998 1.78365 1.16041 0.83120 0.83044 0.77707 1.90910 1.55593 1.44308 1.58450 1.42363 1.06144 1.07024 1.76688 1.17333 0.82589 0.96059 0.96855 1.21373 0.93372 1.00508 1.00340 1.21092 0.95053 0.97000 0.98010 1.21272 0.99699 0.94562 0.99309 1.17048 0.91258 0.87920 0.96444 1.44330 1.61850 1.16665 1.08173 1.22009 1.00507 1.02961 0.76444 1.22293 0.98397 0.94832 1.02911 1.21928 1.04522 0.97857 0.77691 1.44991 1.63331 1.20277 1.09946 1.15688 0.78468 0.81003 0.84422 1.90968 1.64978 1.81328 1.14569 1.20913 0.94984 0.99478 1.01208 0.92556 0.95969 0.96156 0.91659 0.91561 0.92325 0.92328 0.74991 0.73809 0.85722 0.83723 0.85887 0.89273 0.89868 0.91034 0.85069 0.90208 0.86990 0.74195 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 2 C 0.00 0.27 5.47 84.65 0.46 0.74 16 3 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.53 -29.82 9.66 25.60 0.25 -29.57 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 11 C 0.15 4.46 5.67 86.38 0.49 4.95 16 12 N -0.72 -17.77 5.56 -478.53 -2.66 -20.43 16 13 C 0.70 19.16 8.40 179.05 1.50 20.66 16 14 O -0.61 -21.76 13.83 -4.00 -0.06 -21.82 16 15 N -0.67 -13.92 5.34 -317.23 -1.69 -15.61 16 16 C 0.17 3.89 6.28 38.13 0.24 4.12 16 17 C -0.14 -3.51 8.69 22.41 0.19 -3.32 16 18 C -0.09 -2.08 10.03 22.23 0.22 -1.86 16 19 C -0.13 -2.83 9.35 22.41 0.21 -2.62 16 20 C 0.17 3.46 4.62 38.13 0.18 3.63 16 21 N -0.58 -9.58 2.87 -649.54 -1.86 -11.44 16 22 C 0.10 0.81 6.39 86.48 0.55 1.36 16 23 C -0.15 -0.35 6.22 30.84 0.19 -0.16 16 24 C 0.10 0.24 7.22 86.57 0.62 0.86 16 25 N -0.73 -7.88 5.58 -479.41 -2.68 -10.56 16 26 C 0.70 14.02 8.05 179.46 1.45 15.47 16 27 O -0.64 -19.06 16.57 -3.99 -0.07 -19.13 16 28 C -0.14 -2.83 9.76 22.51 0.22 -2.61 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 31 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 7.47 8.49 -92.71 -0.79 6.69 16 37 H 0.42 5.67 8.84 -92.71 -0.82 4.85 16 38 H 0.12 3.72 6.28 -2.91 -0.02 3.70 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.09 0.70 8.04 -2.39 -0.02 0.68 16 42 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.42 3.79 8.88 -92.70 -0.82 2.97 16 48 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -83.32 396.12 -1.25 -84.56 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -1.48 Total: 19.36 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.06 Total: 7.88 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -8.60 Total: -116.86 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.12 Total: -40.94 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -83.32 -1.25 -84.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174183283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.392 kcal (2) G-P(sol) polarization free energy of solvation -83.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds